BAC Information

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BAC

Clone NameB6Ng01-028G21
Chromosome2 (Build37)7 (Build37)
Map Location 142,776,686 - 142,777,69881,374,535 - 81,374,820
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028G21.bB6Ng01-028G21.g
ACCDH858908DH858909
length9451,056
definitionDH858908|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G21, 5' end.DH858909|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,686 - 142,777,698)(81,374,535 - 81,374,820)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctacacaataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccagatattttata
gaattctcacccgaggaatatcgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctgagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtgcaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactacaggaggatcccacaatacctctcctgggc
atatatccagaagatgtcccaatcggtaagaaggacacatgctccactat
gttcatagcagctttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtaatactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggttggacccggagggcatcatcctgagtgaggtaacacaatcacaaaa
gaactcaaatgatatgtactcactgataaatggatattggcccagaaact
ttgtacagtgagatataaggtacaatttgcaaaacacatgaaactgaaga
agaacgaagaccaaagtgtggacactgtgacccttcttagaattggaaac
aatcacccatggaaggagttacagagacaaagtttggagctgagataaaa
ggatggactatctagagactgctatatccagggatccatcccataattag
cctccaaacgatgacattattgcatacactagcaagcatttgatgcaagg
accgtgatatagctgtctcttgtgagactaggccggggcctagcaaacac
agaagtggatgctcacagtcaactattggatggatcacagggccccaatg
gaggagctagagaaagtttccaaggagctaaagagatctgcaaccctgta
gtgcaacaacattatgaactaaccagtaccccggactcttaactctagct
gcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776686_142777698
seq2: B6Ng01-028G21.b_51_603 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGAC  100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGAC  100

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATTGTGTAGAAG  150

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGAATTGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAA  300

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  350

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  550
      ||||||||||||||||||||||||||||||||||| ||            
seq2  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CT  540

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  600
      ||| |||||    |||                                  
seq2  GAACAAAGA----ATTC---------------------------------  553

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  650
                                                        
seq2  --------------------------------------------------  553

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  700
                                                        
seq2  --------------------------------------------------  553

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  750
                                                        
seq2  --------------------------------------------------  553

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  800
                                                        
seq2  --------------------------------------------------  553

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  850
                                                        
seq2  --------------------------------------------------  553

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  900
                                                        
seq2  --------------------------------------------------  553

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  950
                                                        
seq2  --------------------------------------------------  553

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  1000
                                                        
seq2  --------------------------------------------------  553

seq1  GAACAAAGAATTC  1013
                   
seq2  -------------  553

seq1: chr7_81374535_81374820
seq2: B6Ng01-028G21.g_837_1119 (reverse)

seq1  ATATGCAGCTAGAGTCAAGAGCTCCAGGGTACTGGTTATTTCATAATGTT  50
      ||||||||||||||| ||||| ||| |||||||||||| |||||||||||
seq2  ATATGCAGCTAGAGTTAAGAG-TCCGGGGTACTGGTTAGTTCATAATGTT  49

seq1  GTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCT  100
      ||| || ||| ||||||||||||| ||||||||||||||  |||||||||
seq2  GTTGCA-CTACAGGGTTGCAGATCTCTTTAGCTCCTTGGAAACTTTCTCT  98

seq1  AGCTCCTCCATTGGGAGTCCTGTGATCCATCCATTAGCTGACTGTGAGCA  150
      ||||||||||||||| | ||||||||||||||| ||| ||||||||||||
seq2  AGCTCCTCCATTGGG-GCCCTGTGATCCATCCAATAGTTGACTGTGAGCA  147

seq1  TCCACTTCTGTGTTTGCTAGGCCTCGGCATAGTCTCACAAGAGACAGCTA  200
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  TCCACTTCTGTGTTTGCTAGGCCCCGGCCTAGTCTCACAAGAGACAGCTA  197

seq1  CATCTGGGTCCTTTCGATAAAAT-CTTGCTAGTGTATGCAATGGTGTCAG  249
       |||  ||||||| | || |||| ||||||||||||||||||  ||||| 
seq2  TATCACGGTCCTTGC-ATCAAATGCTTGCTAGTGTATGCAATAATGTCAT  246

seq1  CGTTTGGATGCTGATTATGGGGTGGATCCCTGGATAT  286
      |||||||| ||| |||||||| |||||||||||||||
seq2  CGTTTGGAGGCTAATTATGGGATGGATCCCTGGATAT  283