BAC Information

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BAC

Clone NameB6Ng01-028I14
Chromosome2 (Build37)
Map Location 164,480,560 - 164,659,765
singlet/doubletdoublet
Overlap geneWfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa
Upstream genePkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088
Downstream genePltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028I14.bB6Ng01-028I14.g
ACCDH858988DH858989
length1,0901,044
definitionDH858988|Mus musculus domesticus DNA, BAC clone: B6Ng01-028I14, 5' end.DH858989|Mus musculus domesticus DNA, BAC clone: B6Ng01-028I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,658,655 - 164,659,765)(164,480,560 - 164,481,614)
sequence
gaattcgctcgtccagttatcatgccctcctaggaactttagggccaagc
caagcaccagtagtggaagtgcttggagtccgatgctctgaggtagccgg
agtattgccggaaagagggctgcttggccaggccggggagacaatcgatt
tcatcctggtccggagctgcttcgttccgggacgcccaggacaggagcag
caacaagagcagtggagacagcgcggttccgggcatctgcaggaggaagc
atcggtggaggatgtttgtttaccagtccccccagatcccttgcgcttcg
gtgcagcagttcctggggagacgatggcgcacatctccgggagaagcccc
cgctcggatccaactccgggccacagagccaccttcgctgcccaccagtt
tgggcatctccgtacctctgcttccttgcgtccttgctctccaggaggcg
cctttggactggaagtcatgtgtagctctggtcacgtgagcatctgcatc
acgtgacagtttgctcattgttcacttttttaatctgtgggcctgagggt
cgggagtggtcaaagtgcgtggccctgaaggttattagtcagggtgccag
agatcaggtgatcttggtgttgacagaagggttccccaggctcctgggga
ccccttactggtgacaagcgagaaagcggcgctaggacccccaggcagag
ctgggggaagttagagaagggggaaatgccttacatggttcatccacccc
gcccccgcggtcacaatctgagcccgctgcccaaaatagcccttggcatg
agctgccctgttgcacggcttggagatggctgctccctccgacacgtaga
ctgggtggcccacggagctctgcgcgcccagagcccctccacccgcttcc
acaagtgcatggagccacatccgcatggactctcaggacgcgagccacac
gcgtggaaagttgtccacgtgtgtgctcatcgtgagccctgggctccggc
aggtatttctagtggaaattgaggaaaaagactgggctgtgtcgggcact
tcgtctagctgacgctcttggatccgccagtctggcgctg
gaattcagaggcagtgggtggagaaggttgagaacggataggatcaatac
acattatacacaggtatgaggttgtcagaggataaagaaaagatatttta
aaaagccaggaacaaaatttcagagtctttacggtgctgcggatggatct
ggatgtgcagactgtaaccatctcctgggcactcctcaatccctgctcat
cccttccttgcctgctgcccacagccccaccttgctcagccttgagcatc
ttgcagaacatcgtgaattaggacatacatgatggtgtgtgtgtgacata
agtgaaatcactgacggaaaggcatcttgggagacggttacaggattaaa
taaaaagggcagaagatgggtctgagccaaaacgagactctgtgtggcgt
gcccggggaaactgagataatagcgaaccaggatcgaggctggaaaggcg
gctcggtggtaatgagcacctgctattctcgcagaggacgggggttcagt
tcccaactgtggataatgctagttccaggggatctgatgtcctggtgtca
cgtgtggcgagcacgcgcgcgcgcgcacacacacacacacacagacacac
acagagtaaatctttttaaaaatgagtctattttatggacactagaggta
aacatcagaattcctcaccaaccctaagactcacagcttcagctccagac
agcccggcaggaccctgagagccttctgttttctaccaacaatcccggct
ctggctcacagacattttgcctccagggtcagctttatctgcaaacactt
tactcaatctcctgagccctaactatatatatcgtgaggaaattatgtta
gcgcgaagagggggctgaaagagaactcgttatgagaaagccacagagaa
aagtggcaaggggcagaaaaggggaagaaacaggacgctactgttcttct
ctgattggccagcagaagcagtagagaggctccgtctgcttgggaagtct
gccatcagactaattctgagctcatcgctgggttcatatgctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164658655_164659765
seq2: B6Ng01-028I14.b_41_1130 (reverse)

seq1  CAGCGGCCAGACTGGCGGGATCC-AGAGCGGTCAGGCCAAGACGTAAGTG  49
      |||| ||||||||||| |||||| ||||| |||||  | ||||| |||||
seq2  CAGC-GCCAGACTGGC-GGATCCAAGAGC-GTCAG--CTAGACG-AAGTG  44

seq1  CCCGCACCAGCCCAGCTCTTTTTCCTCAATTTCCACTAGAAATACCTGGC  99
      ||||   |||||||| ||||||||||||||||||||||||||||||| ||
seq2  CCCGACACAGCCCAG-TCTTTTTCCTCAATTTCCACTAGAAATACCT-GC  92

seq1  CGGGGGCCAGGGGCTCACGACTGAAGCACACACCGTGGGCGAAACTCTCC  149
      ||| | ||| |||||||||| || |||||||| ||||| |  |||| |||
seq2  CGGAGCCCA-GGGCTCACGA-TG-AGCACACA-CGTGGAC--AACTTTCC  136

seq1  ACGCGTGTGGCTCGCGTTCCTGAGGGGTCCATGCGGATGTTGGCTCCATG  199
      |||||||||||||||| |||||| | ||||||||||||| ||||||||||
seq2  ACGCGTGTGGCTCGCG-TCCTGA-GAGTCCATGCGGATG-TGGCTCCATG  183

seq1  CACTTGGTGGAAGCGGGTGGGAGGGGGCTCTGGGCGCGCAGGGCTCCGTG  249
      ||||| ||||||||||||||   |||||||||||||||||| ||||||||
seq2  CACTT-GTGGAAGCGGGTGG--AGGGGCTCTGGGCGCGCAGAGCTCCGTG  230

seq1  GGCCACCCAGTCCTACGTGTTCGGAGGGAGCAGCCATCTCCAAGCCGTGC  299
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  GGCCACCCAGT-CTACGTG-TCGGAGGGAGCAGCCATCTCCAAGCCGTGC  278

seq1  AACAGGGCAGCTCATGCCAAGGGCTATTTTGGGCAGCGGGCTCAGATTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCAGCTCATGCCAAGGGCTATTTTGGGCAGCGGGCTCAGATTGT  328

seq1  GACCGCGGGGGCGGGGTGGATGAACCATGTAAGGCATTTCCCCCTTCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGCGGGGGCGGGGTGGATGAACCATGTAAGGCATTTCCCCCTTCTCT  378

seq1  AACTTCCCCCAGCTCTGCCTGGGGGTCCTAGCGCCGCTTTCTCGCTTGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCCCAGCTCTGCCTGGGGGTCCTAGCGCCGCTTTCTCGCTTGTC  428

seq1  ACCAGTAAGGGGTCCCCAGGAGCCTGGGGAACCCTTCTGTCAACACCAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAAGGGGTCCCCAGGAGCCTGGGGAACCCTTCTGTCAACACCAAG  478

seq1  ATCACCTGATCTCTGGCACCCTGACTAATAACCTTCAGGGCCACGCACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTGATCTCTGGCACCCTGACTAATAACCTTCAGGGCCACGCACTT  528

seq1  TGACCACTCCCGACCCTCAGGCCCACAGATTAAAAAAGTGAACAATGAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACTCCCGACCCTCAGGCCCACAGATTAAAAAAGTGAACAATGAGC  578

seq1  AAACTGTCACGTGATGCAGATGCTCACGTGACCAGAGCTACACATGACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTCACGTGATGCAGATGCTCACGTGACCAGAGCTACACATGACTT  628

seq1  CCAGTCCAAAGGCGCCTCCTGGAGAGCAAGGACGCAAGGAAGCAGAGGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCAAAGGCGCCTCCTGGAGAGCAAGGACGCAAGGAAGCAGAGGTA  678

seq1  CGGAGATGCCCAAACTGGTGGGCAGCGAAGGTGGCTCTGTGGCCCGGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGATGCCCAAACTGGTGGGCAGCGAAGGTGGCTCTGTGGCCCGGAGT  728

seq1  TGGATCCGAGCGGGGGCTTCTCCCGGAGATGTGCGCCATCGTCTCCCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCGAGCGGGGGCTTCTCCCGGAGATGTGCGCCATCGTCTCCCCAG  778

seq1  GAACTGCTGCACCGAAGCGCAAGGGATCTGGGGGGACTGGTAAACAAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCTGCACCGAAGCGCAAGGGATCTGGGGGGACTGGTAAACAAACA  828

seq1  TCCTCCACCGATGCTTCCTCCTGCAGATGCCCGGAACCGCGCTGTCTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACCGATGCTTCCTCCTGCAGATGCCCGGAACCGCGCTGTCTCCA  878

seq1  CTGCTCTTGTTGCTGCTCCTGTCCTGGGCGTCCCGGAACGAAGCAGCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTGTTGCTGCTCCTGTCCTGGGCGTCCCGGAACGAAGCAGCTCC  928

seq1  GGACCAGGATGAAATCGATTGTCTCCCCGGCCTGGCCAAGCAGCCCTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGGATGAAATCGATTGTCTCCCCGGCCTGGCCAAGCAGCCCTCTT  978

seq1  TCCGGCAATACTCCGGCTACCTCAGAGCATCGGACTCCAAGCACTTCCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCAATACTCCGGCTACCTCAGAGCATCGGACTCCAAGCACTTCCAC  1028

seq1  TACTGGTGCTTGGCTTGGCCCTAAAGTTCCTAGGAGGGCATGATAACTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGCTTGGCTTGGCCCTAAAGTTCCTAGGAGGGCATGATAACTGG  1078

seq1  ACGAGCGAATTC  1111
      ||||||||||||
seq2  ACGAGCGAATTC  1090

seq1: chr2_164480560_164481614
seq2: B6Ng01-028I14.g_65_1108

seq1  GAATTCAGAGGCAGTGGGTGGAGAAGGTTGAGAACGGATAGGATCAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCAGTGGGTGGAGAAGGTTGAGAACGGATAGGATCAATAC  50

seq1  ACATTATACACAGGTATGAGGTTGTCAGAGGATAAAGAAAAGATATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATACACAGGTATGAGGTTGTCAGAGGATAAAGAAAAGATATTTTA  100

seq1  AAAAGCCAGGAACAAAATTTCAGAGTCTTTACGGTGCTGCGGATGGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAGGAACAAAATTTCAGAGTCTTTACGGTGCTGCGGATGGATCT  150

seq1  GGATGTGCAGACTGTAACCATCTCCTGGGCACTCCTCAATCCCTGCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGCAGACTGTAACCATCTCCTGGGCACTCCTCAATCCCTGCTCAT  200

seq1  CCCTTCCTTGCCTGCTGCCCACAGCCCCACCTTGCTCAGCCTTGAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTGCCTGCTGCCCACAGCCCCACCTTGCTCAGCCTTGAGCATC  250

seq1  TTGCAGAACATCGTGAATTAGGACATACATGATGGTGTGTGTGTGACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAACATCGTGAATTAGGACATACATGATGGTGTGTGTGTGACATA  300

seq1  AGTGAAATCACTGACGGAAAGGCATCTTGGGAGACGGTTACAGGATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATCACTGACGGAAAGGCATCTTGGGAGACGGTTACAGGATTAAA  350

seq1  TAAAAAGGGCAGAAGATGGGTCTGAGCCAAAACGAGACTCTGTGTGGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGGCAGAAGATGGGTCTGAGCCAAAACGAGACTCTGTGTGGCGT  400

seq1  GCCCGGGGAAACTGAGATAATAGCGAACCAGGATCGAGGCTGGAAAGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGGAAACTGAGATAATAGCGAACCAGGATCGAGGCTGGAAAGGCG  450

seq1  GCTCGGTGGTAATGAGCACCTGCTATTCTCGCAGAGGACGGGGGTTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGTGGTAATGAGCACCTGCTATTCTCGCAGAGGACGGGGGTTCAGT  500

seq1  TCCCAACTGTGGATAATGCTAGTTCCAGGGGATCTGATGTCCTGGTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTGTGGATAATGCTAGTTCCAGGGGATCTGATGTCCTGGTGTCA  550

seq1  CGTGTGGCGAGCACGCGCGCGCGCGCACACACACACACACACAGACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGCGAGCACGCGCGCGCGCGCACACACACACACACACAGACACAC  600

seq1  ACAGAGTAAATCTTTTTAAAAATGAGTCTATTTTATGGACACTAGAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTAAATCTTTTTAAAAATGAGTCTATTTTATGGACACTAGAGGTA  650

seq1  AACATCAGAATTCCTCACCAACCCTAAGACTCACAGCTTCAGCTCCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGAATTCCTCACCAACCCTAAGACTCACAGCTTCAGCTCCAGAC  700

seq1  AGCCCGGCAGGACCCTGAGAGCCTTCTG-TTTCTACCAACAATCCCGGCT  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCCCGGCAGGACCCTGAGAGCCTTCTGTTTTCTACCAACAATCCCGGCT  750

seq1  CTGGCTCACAGACA-TTTGCCTCCA-GGTCAGCTTTATCTGCAAACACTT  797
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  CTGGCTCACAGACATTTTGCCTCCAGGGTCAGCTTTATCTGCAAACACTT  800

seq1  TACTCAATCTCCTGAGCCCTAAACTATATATATCGTGAGGAAATTATGTT  847
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TACTCAATCTCCTGAGCCCT-AACTATATATATCGTGAGGAAATTATGTT  849

seq1  AGCGCGAAGAGGGGGCTGAAAGAGATCTCGTTTATGAGAAAAGCCACAGA  897
      ||||||||||||||||||||||||| |||| ||||||| |||||||||||
seq2  AGCGCGAAGAGGGGGCTGAAAGAGAACTCG-TTATGAG-AAAGCCACAGA  897

seq1  GAAAAAGGGCAAGGGGCAAGAAAAGGGGAAGAAACAGGACGGCTACTGCT  947
      |||||  |||||||||| |||||||||||||||||||||| ||||||| |
seq2  GAAAAGTGGCAAGGGGC-AGAAAAGGGGAAGAAACAGGAC-GCTACTGTT  945

seq1  CTGCCCTGATTTGGCCAGCAGAGGCAGTAGAGAGGCCCCGTCCTGCTGTG  997
      || | |||| |||||||||||| ||||||||||||| |||| ||||| ||
seq2  CTTCTCTGA-TTGGCCAGCAGAAGCAGTAGAGAGGCTCCGT-CTGCT-TG  992

seq1  GGAAAGTCTGCCATCCAGACTAGATCTGAGCTCACCGCCTGGGTCGCAGT  1047
      || ||||||||||| |||||||  |||||||||| || ||||||  ||  
seq2  GG-AAGTCTGCCAT-CAGACTAATTCTGAGCTCATCG-CTGGGT-TCA--  1036

seq1  TATGCTGT  1055
      ||||||||
seq2  TATGCTGT  1044