BAC Information

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BAC

Clone NameB6Ng01-028J14
Chromosome2 (Build37)
Map Location 23,874,873 - 23,875,436
singlet/doubletsinglet
Overlap geneHnmt
Upstream geneAbi1, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1
Downstream geneTbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028J14.bB6Ng01-028J14.g
ACCDH859035DH859036
length1,284945
definitionDH859035|Mus musculus domesticus DNA, BAC clone: B6Ng01-028J14, 5' end.DH859036|Mus musculus domesticus DNA, BAC clone: B6Ng01-028J14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccgctcagtggtagaagatgcctagcaagtgcaaggcaagtgcaa
ggccctgagttcagtctctactaactctccttcccccgcccctcccccta
aaaaaaacaagaaagaaagaaagaaagacagagaaagagagagagagaga
gagagagagagagagaaagaagaagaagaaagaggaggaggaggaggagg
agggaaggaaggacttagaactgaactacctttaaaatgaaaatataaag
gcatagaaaaaaatggaagaaagccctagaaaataggaaaaaaaaaaaac
cttccatgctcatggattggttgaaataatattgtgttaaatgactttat
tgtcaaaagcaggatccgggataacataaccaagatcctaataacattct
tcacagaactgtaaaagacaattctaaaatgtacataaacaaagagaccc
tggacagccaaagcagtgctaagaaagaacaatgctggaggcatcacaat
atctgatcttaaattgtgctacaagaccacagggacaaagacaacatgcc
actggccctaaagcagacagctaagccaatagaacagaatagatgaccca
gatataaatccacagagctgcagccacttaattattgacaaaagtgcata
aaaaacatacataggttaaaataaacaatctctttgacaaatgatgctgg
gcaaactagatattcaaaaattatctctaaagctgtcatcctgcagaaag
gcccattcaaaataaccaaagatcttaatagaaaacttgaaatatcaaaa
ctcttggaaaatcatagggaaacacttcaaaatgcaagaatgggcaaaag
atatctgaaaaagattctaataacacacacactcacacacacatgtgcac
acatacatacacaccacatacacacacatatatatatactcaaaacacat
acacatacacatacacagagtcacatatacacttatacacacaatcacat
acacactcatactcattccaccagactcacatacacatatacaacttcaa
atacaaacacaaaatcaccccccaattatgcccgtactcaggtccccccc
catgtttctccacccacatcacacaccacatcaattaccatatccataca
taaccaacaccttgcccacatttacccccaccaatccacctcggaatcat
cttcggaaaaacccatcgaatgcagattacatgaactcccttaaaaaaac
ctcatcgctgcccgaaagaaagcatgagcctcta
gaattctccgtgccacaggacccctagcacacccaagacctcctggtcac
ctgagagcacatgggtgatagaagcaacagagcttcttggtcagggtccc
ctcaagccttcatcctcagccaggaggcagagctgagacctagacccttg
ggcacattccttgccaagggagagttggcctatagggagggttctgaccc
caaaactcagggggtagatcagagttccaaactgctggacacttgccatg
caagaggagagcttgcctacagagagtgctctgaccactggaacttaagt
gagagttggactcccaagagtgcttacagaggctgaccgaatcacaggag
gatcaagctccagccagagacacctagaatatctaacaccagagatttcc
agatggtgaaaggcaaatgtaagactcttactaacagaaaccaagaacac
tgggcatcatctgaacccagtacgcccacaataacaaatcctggataccc
cagcacacccgaaaagcaagacgcggatttaaaatcatattgcatgatgg
tggtagaatgacattaataactcacttaaagaaatacaggagagcagtgc
taaagaggtagaagcccttaaagaggaagcacaaaatcccttaagaaatt
ataggagaatactgctaaaaaagtagaagctcttaaagaggaaacacaaa
aatccctcaaggaattacaggagaacactactaaacaggaagaggaaaca
caaaaaaaatcccttaaagaattacaggaaaacacaggtgatggaattga
acaaaaccattcaagatctaaaaatggaagtagaaacaatgaggaaaacc
caaagggagacactctggagatggaaaccctaggaagaaatcagaaccat
agtgtgatgatcagcaacaaatacaagagatggaagagagatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_23874873_23875436
seq2: B6Ng01-028J14.g_66_629

seq1  GAATTCTCCATGCCACAGGACCCCTAGCACACCCAAGACCTCCTGGTCAC  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGTGCCACAGGACCCCTAGCACACCCAAGACCTCCTGGTCAC  50

seq1  CTGAGAGCACATGGGTGATAGAAGCAACAGAGCTTCTTGGTCAGGGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCACATGGGTGATAGAAGCAACAGAGCTTCTTGGTCAGGGTCCC  100

seq1  CTCAGGCCTTCATCCTCAGCCAGGAGGCAGAGCTGAGACCTAGACCCTTG  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCTTCATCCTCAGCCAGGAGGCAGAGCTGAGACCTAGACCCTTG  150

seq1  GGCACATTCCTTGCCAAGGGAGAGTTGGCCTATAGGGAGGGTTCTGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTCCTTGCCAAGGGAGAGTTGGCCTATAGGGAGGGTTCTGACCC  200

seq1  CAGAACTCAGGGGGTAGATCAGAGTTCCAAACTGCTGGACACTTGCCATG  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCAGGGGGTAGATCAGAGTTCCAAACTGCTGGACACTTGCCATG  250

seq1  CAAGAGGAGAGCTTGCCTACAGAGAGTGCTCTGACCACTGGAACTTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAGAGGAGAGCTTGCCTACAGAGAGTGCTCTGACCACTGGAACTTAAGT  300

seq1  GAGAGTTGGACTCCCAGGAGTGCTTACAGAGGCTAACAGAATCACAGGAG  350
      |||||||||||||||| ||||||||||||||||| || ||||||||||||
seq2  GAGAGTTGGACTCCCAAGAGTGCTTACAGAGGCTGACCGAATCACAGGAG  350

seq1  GATCAAGCTCCAGCCAGAGACACCTAGAATATCTAACACCAGAGATTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGCTCCAGCCAGAGACACCTAGAATATCTAACACCAGAGATTTCC  400

seq1  AGATGGTGAAAGGCAAATGTAAGACTCTTACTAACAGAAACCAAGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGAAAGGCAAATGTAAGACTCTTACTAACAGAAACCAAGAACAC  450

seq1  TGGGCATCATCTGAACCCAGTACGCCCACAATAACAAATCCTGGATACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCATCTGAACCCAGTACGCCCACAATAACAAATCCTGGATACCC  500

seq1  CAGCACACCCGAAAAGCAAGACGCGGATTTAAAATCATATTGCATGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACCCGAAAAGCAAGACGCGGATTTAAAATCATATTGCATGATGG  550

seq1  TGGTAGAATGACAT  564
      ||||||||||||||
seq2  TGGTAGAATGACAT  564