BAC Information

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BAC

Clone NameB6Ng01-028K20
Chromosome2 (Build37)
Map Location 143,841,239 - 143,949,080
singlet/doubletdoublet
Overlap gene4930517K23Rik
Upstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
Downstream geneLOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028K20.bB6Ng01-028K20.g
ACCDH859093DH859094
length1,1741,118
definitionDH859093|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K20, 5' end.DH859094|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,841,239 - 143,842,408)(143,947,959 - 143,949,080)
sequence
gaattcagttcccacactcacaggtggctcacaactatctgtaattccaa
tcctggggacccagcatcctctcctgacctctgcaggcaccaggcatgca
ggtggtgctctctctctcacacacacacacacacacacacacacacacac
acacacacacacacacgccaggcaaaacactcgtacacagaaaataaaca
aataaataactgtttaatttttcaaaaaaggtagggtaaaatatacaata
tttttagggcttgccatgaactatgcattaatttaagcaccctacaaatg
tgtaaactcatctaaccttcagaatggaccaaatggttttataactctct
ccattttaaagacgagaaacccgaggctctgagagggtgagtaacctgcc
cactatcccaaggcacagtcagagaagcagtgattgcctgcagagcccat
atacataaggattgcacactggaaggagctctgtgcctctggggagaaca
gaggctgttcttctggtggtagccactcaacgaagggtcggtgcacggca
tctacgatcattctctcagcatgatcttcgagtaaccgagacccaactag
gctggggacccactgggttgggagaggacccatcaaaataattcaactaa
gaagtaacatgagatcttggaagggttcagatggggtggtattcgtgtgt
ttagaaggtgatgggaacagggcttggtgaactcaggtgagggagagata
ggagtcatctttgagctgagctttctggcctgagggatagggtcatgtgg
tgtcacttctgggacagaatacttagcacagtacacatggtgttaaatga
aggctcctgggggaagtcctgagggaggtacaacaggcaacgccttactt
aggctccaccacacattctgagacacccaacattggtgattgcattccac
aaacagcttagatgtaccacacaacttagacggttacagcatcattaggt
catacaataggaccattttgtatattgcaccaatatctgtcattacatat
ttgttttgggagctgacgttcagggtctgaggcaaatttgaagcctaaag
tacagttgtaatggtagatatgttggcccaggagtcatatttgaaggtag
cttgaaatgcgtggttggtagcct
gaattcagttcttatccctttggctaatgaccatgtactttgggtctcct
tttgtcatctgattccacattaagacaccatctgacattaattgttggtt
tctcagatcctctgctattctggaatggctcaaaggtcactaataaagtc
ttttggccaatttattaatagtcacagctatttttacttctgcttgttgc
ggtgcaacactgtgtagtactggaagcatagggacgctgttttcctttgg
tgtcttttgtaggagctgggtgggggaaagggttatacaggacgtcttgg
catcaccaggataagtagcttcggggctgggcacaactgcaaattgcctc
cttgtcaagatccctttgacaagggagaaggcaagtgtgagaaatccaat
tcaagcacacagggaattcgttgactccagtgataagactccagcaataa
cgctcacgcaaagctggctccagcggctctggtggggcacgcaccctctc
tgctctgcgttcctcccctttgctcttggtttctttccacttctctctct
ctctgttttctccttctcatgtgcacacacacacaaacctcatcctacct
tgcttctatttacctttattccactctattcccatgccatgcaaaatggc
agccacgcttctggttgtttccacgttttctgggtagcctttccgcgatc
ctctagcaacttcacaaggtcccagattgggcttccctgagtcaatcata
gtgatcaagaagatagaagattctgattggttgccctgggtcaatgcctg
tagcagtgggtcagtcaggagaaagatagtggctagaagggagtcatggg
tggaggaacatccagagcagtcaacagaagtggacacggatgcatgtgga
gtgactgccgctgtcactaccgtctcagacccacagatccaaattggaca
gctagaagttcggccccaaagcaaccagaatgtttaacccctctgactcc
tcttgtgaggaaagggacaacatgtagtctgttgagaactatatcgaaac
aacgtctgggcactgctcttttgaagaacacccaaggcatggggctggaa
tccgtgaaacgggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143841239_143842408
seq2: B6Ng01-028K20.b_48_1221

seq1  GAATTCAGTTCCCACACTCACAGGTGGCTCACAACTATCTGTAATTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCACACTCACAGGTGGCTCACAACTATCTGTAATTCCAA  50

seq1  TCCTGGGGACCCAGCATCCTCTCCTGACCTCTGCAGGCACCAGGCATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGACCCAGCATCCTCTCCTGACCTCTGCAGGCACCAGGCATGCA  100

seq1  GGTGGTGCTCTCTCTCTCACACACACACACACACACACACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCTCTCTCTCTCACACACACACACACACACACACACACACACAC  150

seq1  ACACACACACACACACGCCAGGCAAAACACTCGTACACAGAAAATAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACGCCAGGCAAAACACTCGTACACAGAAAATAAACA  200

seq1  AATAAATAACTGTTTAATTTTTCAAAAAAGGTAGGGTAAAATATACAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAACTGTTTAATTTTTCAAAAAAGGTAGGGTAAAATATACAATA  250

seq1  TTTTTAGGGCTTGCCATGAACTATGCATTAATTTAAGCACCCTACAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGGCTTGCCATGAACTATGCATTAATTTAAGCACCCTACAAATG  300

seq1  TGTAAACTCATCTAACCTTCAGAATGGACCAAATGGTTTTATAACTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTCATCTAACCTTCAGAATGGACCAAATGGTTTTATAACTCTCT  350

seq1  CCATTTTAAAGACGAGAAACCCGAGGCTCTGAGAGGGTGAGTAACCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAAAGACGAGAAACCCGAGGCTCTGAGAGGGTGAGTAACCTGCC  400

seq1  CACTATCCCAAGGCACAGTCAGAGAAGCAGTGATTGCCTGCAGAGCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCCCAAGGCACAGTCAGAGAAGCAGTGATTGCCTGCAGAGCCCAT  450

seq1  ATACATAAGGATTGCACACTGGAAGGAGCTCTGTGCCTCTGGGGAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAGGATTGCACACTGGAAGGAGCTCTGTGCCTCTGGGGAGAACA  500

seq1  GAGGCTGTTCTTCTGGTGGTAGCCACTCAACGAAGGGTCGGTGCACGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTTCTTCTGGTGGTAGCCACTCAACGAAGGGTCGGTGCACGGCA  550

seq1  TCTACGATCATTCTCTCAGCATGATCTTCGAGTAACCGAGACCCAACTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGATCATTCTCTCAGCATGATCTTCGAGTAACCGAGACCCAACTAG  600

seq1  GCTGGGGACCCACTGGGTTGGGAGAGGACCCATCAAAATAATTCAACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGACCCACTGGGTTGGGAGAGGACCCATCAAAATAATTCAACTAA  650

seq1  GAAGTAACATGAGATCTTGGAAGGGTTCAGATGGGGTGGTATTCGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAACATGAGATCTTGGAAGGGTTCAGATGGGGTGGTATTCGTGTGT  700

seq1  TTAGAAGGTGATGGGAACAGGGCTTGGTGAACCCAGGTGAGGGAGAGATA  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTAGAAGGTGATGGGAACAGGGCTTGGTGAACTCAGGTGAGGGAGAGATA  750

seq1  GGAGTCATCTTTGAGCTGAGCTTTCTGGCCTGAGGGATAGGGTCATGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCATCTTTGAGCTGAGCTTTCTGGCCTGAGGGATAGGGTCATGTGG  800

seq1  TGTCACTTCTGGGACAGAATACTTAGCACAGTACACATGGTGTTAAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTCTGGGACAGAATACTTAGCACAGTACACATGGTGTTAAATGA  850

seq1  AGGCTCCTGGGGGAAGTCCTGAGGGAGGTACAACAGGCAACGCCTTACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTGGGGGAAGTCCTGAGGGAGGTACAACAGGCAACGCCTTACTT  900

seq1  AGGCTCCACCACACATTCTGAGACACCCAACATTGGGTGATTGCATTCCA  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGCTCCACCACACATTCTGAGACACCCAACATT-GGTGATTGCATTCCA  949

seq1  CAAACAGCTTAGAATGTACCACACAAACTTAAGACGGTTACAGCATCATT  1000
      |||||||||||| ||||||||||| ||||| |||||||||||||||||||
seq2  CAAACAGCTTAG-ATGTACCACAC-AACTT-AGACGGTTACAGCATCATT  996

seq1  AGGTCATACAATAGGACCATTTTGTATA-TGCACCAATATCTGTCATTAC  1049
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGGTCATACAATAGGACCATTTTGTATATTGCACCAATATCTGTCATTAC  1046

seq1  ACTATTGTTTTGTGGAGCTGACGTTCAGGGTCTGAGGCAGAATTTGGAAG  1099
      |   |||||||| |||||||||||||||||||||||||| ||||| ||||
seq2  ATATTTGTTTTG-GGAGCTGACGTTCAGGGTCTGAGGCA-AATTT-GAAG  1093

seq1  CCTAAGAGTACCAGTTGTAGTGGTATGAATATGTTTGGCCCAGGGAGTGC  1149
      ||||| |||| |||||||| |||||   ||||| |||||||| |||||  
seq2  CCTAA-AGTA-CAGTTGTAATGGTA--GATATG-TTGGCCCA-GGAGT--  1135

seq1  CATTATTTGAAGG-------------------GGTAGCCT  1170
      || ||||||||||                   ||||||||
seq2  CA-TATTTGAAGGTAGCTTGAAATGCGTGGTTGGTAGCCT  1174

seq1: chr2_143947959_143949080
seq2: B6Ng01-028K20.g_67_1184 (reverse)

seq1  CTCCTTCCCCGTTTCACGGATT-CAGCCCCATGCCCTGGGTGTGTCTCTC  49
      |||||  ||||||||||||||| |||||||||||| ||||||| |||   
seq2  CTCCT--CCCGTTTCACGGATTCCAGCCCCATGCCTTGGGTGT-TCTTCA  47

seq1  AAAGAGCCAGTGCCCAGACGTTGTCTCCGAAATAG-TCTCAACCGGCTAC  98
      |||||| ||||||||||||||||| | ||| |||| ||||||| | ||||
seq2  AAAGAG-CAGTGCCCAGACGTTGT-TTCGATATAGTTCTCAACAGACTAC  95

seq1  ATGTTTGTCCCTTTCCTCAC-AGAGGGGTCAGA-GGGTTAAACATGCTGG  146
      ||| |||||||||||||||| ||||| |||||| ||||||||||| ||||
seq2  ATG-TTGTCCCTTTCCTCACAAGAGGAGTCAGAGGGGTTAAACATTCTGG  144

seq1  TTGCTTTGGGGGCCGAACTTCTAGCTGTCCAATTTGGATCTGTGGGTCTG  196
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTT-GGGGCCGAACTTCTAGCTGTCCAATTTGGATCTGTGGGTCTG  193

seq1  AGACGGTAGTGGCAGCGGCAGTCACTCCACATGCATCCGTGTCCACCTTC  246
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  AGACGGTAGTGACAGCGGCAGTCACTCCACATGCATCCGTGTCCA-CTTC  242

seq1  TGTTGACTGCTCTGGATGTTCCTCCACCCATGACTCCCTTCTAGCCACTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTGCTCTGGATGTTCCTCCACCCATGACTCCCTTCTAGCCACTA  292

seq1  TCTTTCTCCTGACTGACCCACTGCTACAGGCATTGACCCAGGGCAACCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCTGACTGACCCACTGCTACAGGCATTGACCCAGGGCAACCAA  342

seq1  TCAGAATCTTCTATCTTCTTGATCACTATGATTGACTCAGGGAAGCCCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCTTCTATCTTCTTGATCACTATGATTGACTCAGGGAAGCCCAA  392

seq1  TCTGGGACCTTGTGAAGTTGCTAGAGGATCGCGGAAAGGCTACCCAGAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACCTTGTGAAGTTGCTAGAGGATCGCGGAAAGGCTACCCAGAAA  442

seq1  ACGTGGAAACAACCAGAAGCGTGGCTGCCATTTTGCATGGCATGGGAATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGAAACAACCAGAAGCGTGGCTGCCATTTTGCATGGCATGGGAATA  492

seq1  GAGTGGAATAAAGGTAAATAGAAGCAAGGTAGGATGAGGTTTGTGTGTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAATAAAGGTAAATAGAAGCAAGGTAGGATGAGGTTTGTGTGTGT  542

seq1  GTGCACATGAGAAGGAGAAAACAGAGAGAGAGAGAAGTGGAAAGAAACCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATGAGAAGGAGAAAACAGAGAGAGAGAGAAGTGGAAAGAAACCA  592

seq1  AGAGCAAAGGGGAGGAACGCAGAGCAGAGAGGGTGCGTGCCCCACCAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAGGGGAGGAACGCAGAGCAGAGAGGGTGCGTGCCCCACCAGAG  642

seq1  CCGCTGGAGCCAGCTTTGCGTGAGCGTTATTGCTGGAGTCTTATCACTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGGAGCCAGCTTTGCGTGAGCGTTATTGCTGGAGTCTTATCACTGG  692

seq1  AGTCAACGAATTCCCTGTGTGCTTGAATTGGATTTCTCACACTTGCCTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACGAATTCCCTGTGTGCTTGAATTGGATTTCTCACACTTGCCTTC  742

seq1  TCCCTTGTCAAAGGGATCTTGACAAGGAGGCAATTTGCAGTTGTGCCCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTCAAAGGGATCTTGACAAGGAGGCAATTTGCAGTTGTGCCCAG  792

seq1  CCCCGAAGCTACTTATCCTGGTGATGCCAAGACGTCCTGTATAACCCTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAAGCTACTTATCCTGGTGATGCCAAGACGTCCTGTATAACCCTTT  842

seq1  CCCCCACCCAGCTCCTACAAAAGACACCAAAGGAAAACAGCGTCCCTATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCAGCTCCTACAAAAGACACCAAAGGAAAACAGCGTCCCTATG  892

seq1  CTTCCAGTACTACACAGTGTTGCACCGCAACAAGCAGAAGTAAAAATAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTACTACACAGTGTTGCACCGCAACAAGCAGAAGTAAAAATAGC  942

seq1  TGTGACTATTAATAAATTGGCCAAAAGACTTTATTAGTGACCTTTGAGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTATTAATAAATTGGCCAAAAGACTTTATTAGTGACCTTTGAGCC  992

seq1  ATTCCAGAATAGCAGAGGATCTGAGAAACCAACAATTAATGTCAGATGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGAATAGCAGAGGATCTGAGAAACCAACAATTAATGTCAGATGGT  1042

seq1  GTCTTAATGTGGAATCAGATGACAAAAGGAGACCCAAAGTACATGGTCAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAATGTGGAATCAGATGACAAAAGGAGACCCAAAGTACATGGTCAT  1092

seq1  TAGCCAAAGGGATAAGAACTGAATTC  1122
      ||||||||||||||||||||||||||
seq2  TAGCCAAAGGGATAAGAACTGAATTC  1118