BAC Information

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BAC

Clone NameB6Ng01-028N10
Chromosome2 (Build37)9 (Build37)
Map Location 131,605,235 - 131,606,38333,026,641 - 33,027,162
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d
Downstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028N10.bB6Ng01-028N10.g
ACCDH859211DH859212
length1,133943
definitionDH859211|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N10, 5' end.DH859212|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,605,235 - 131,606,383)(33,026,641 - 33,027,162)
sequence
gaattcagcatagcgacatactattggcttattcaaacatcagcagaaaa
attacatgtacgtgcagggtgtcagggttctgtgagttgttgactcagtt
cagatagccttgttatgtcctcacattcctctttatctttatggtcaagc
tgctcccaggaatgttttaactacagggcattcccggatttgtttttctt
ttttcctcagccccaggcagcctctaggctcacaaacaaccagcaatttc
tgagtactttatatgacttacaggtcttgaaatttcatctttctttcagg
tgtacccaactgcttggattttagttaattctagatgtgatcaagactat
tcatgacaagaagcccagtttccaaaaaaactcaaaatgtagaaaaccca
gatttagaaaacttaaaaccagagaacagctacacactgaaaaggcaggc
tgattttctcccaagccttcattatctgtagacacaaccactaactaagt
cacttccctcctagctatggcgacagtgcttttgggggaactttaaatat
cccgtgtcaccatgccacaccctgtaaccccttctcatgctcaagctggc
aataacaataacaatatttattaaaccatttatgaagtggaaatttctgg
ttgtgtcatgtgattcagactcgtgatgttttgctgaagcaggcccagga
aaggacacgtgatgtttggagagagaataagtagaacccaccagacagtg
agaagtgcttacattccagctgtgcaatgcttcattggtcttgtgtcttt
gctgatctccaattcattgagagagtcacaacagagaagttctctgtgaa
ttctggctggttctggtctttcctgctgactcatgccaatttgacagagg
cctgggtgtttctgctggatcatgcaaagctgctgatttatgtttggtga
ctcttctttttattttagatttattaattatatgtaagcaactgtagctg
tcttgagacactttttcttctctttcagccctgctcactctagccaaaga
tttatttatattaatagtagtgcactgtagtgtctcaaaccacagaaatg
catcgaatctcctaggattattatgagccccat
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagtctgatcttgaactttctaacgaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctggtgttagg
agcccttttgttccttttcacatgttatcaagtggttaagatagggagga
ttctagatgaaattcaggacaagctatcagaagtaaagtggggagagaga
gtaggaacaaagaggaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagttaaggttaggtaggaatacctgga
gagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaatta
gcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggctcgg
ggagccagctcttagtagctctgaagcagatggagaattctcctctgagg
aaacagactgggaggaagaagcagcccattaccagccagctaattggtca
agaaaaaagccaaaagcggctggcgaaggccagtttgctgattggcctca
gggcagtcggcttcaaggtccgccctatgcggagtccccgccctgcgtag
tgcgtcagcaatgcgcagagaggcagtgcgcagagaggcagtgcgcagac
tcattcattcccagagaggaacaaaggaaaatacaacaggcatttccggt
ctttgaaggagccgagggtgggcgtgtccacgctccggtagaatacttac
aaattaaggaaattgccgagtcggttcgtaaatacggaaccaatgctaat
tttaccttggtgcagttagacaggctcgctggcatggcactaactcctgc
tgactggcaacggttgtaaaagccgctctccctagtatgggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131605235_131606383
seq2: B6Ng01-028N10.b_46_1178

seq1  GAATTCAGCATAGCGACATACTATTGGCTTATTCAAACATCAGCAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGCGACATACTATTGGCTTATTCAAACATCAGCAGAAAA  50

seq1  ATTACATGTACGTGCAGGGTGTCAGGGTTCTGTGAGTTGTTGACTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTACGTGCAGGGTGTCAGGGTTCTGTGAGTTGTTGACTCAGTT  100

seq1  CAGATAGCCTTGTTATGTCCTCACATTCCTCTTTATCTTTATGGTCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCCTTGTTATGTCCTCACATTCCTCTTTATCTTTATGGTCAAGC  150

seq1  TGCTCCCAGGAATGTTTTAACTACAGGGCATTCCCGGATTTGTTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCAGGAATGTTTTAACTACAGGGCATTCCCGGATTTGTTTTTCTT  200

seq1  TTTTCCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTC  250

seq1  TGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAGG  300

seq1  TGTACCCAACTGCTTGGATTTTAGTTAATTCTAGATGTGATCAAGACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCAACTGCTTGGATTTTAGTTAATTCTAGATGTGATCAAGACTAT  350

seq1  TCATGACAAGAAGCCCAGTTTCCAAAAAAACTCAAAATGTAGAAAACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACAAGAAGCCCAGTTTCCAAAAAAACTCAAAATGTAGAAAACCCA  400

seq1  GATTTAGAAAACTTAAAACCAGAGAACAGCTACACACTGAAAAGGCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGAAAACTTAAAACCAGAGAACAGCTACACACTGAAAAGGCAGGC  450

seq1  TGATTTTCTCCCAAGCCTTCATTATCTGTAGACACAACCACTAACTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCTCCCAAGCCTTCATTATCTGTAGACACAACCACTAACTAAGT  500

seq1  CACTTCCCTCCTAGCTATGGCGACAGTGCTTTTGGGGGAACTTTAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCTCCTAGCTATGGCGACAGTGCTTTTGGGGGAACTTTAAATAT  550

seq1  CCCGTGTCACCATGCCACACCCTGTAACCCCTTCTCATGCTCAAGCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGTCACCATGCCACACCCTGTAACCCCTTCTCATGCTCAAGCTGGC  600

seq1  AATAACAATAACAATATTTATTAAACCATTTATGAAGTGGAAATTTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATAACAATATTTATTAAACCATTTATGAAGTGGAAATTTCTGG  650

seq1  TTGTGTCATGTGATTCAGACTCGTGATGTTTTGCTGAAGCAGGCCCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCATGTGATTCAGACTCGTGATGTTTTGCTGAAGCAGGCCCAGGA  700

seq1  AAGGACACGTGATGTTTGGAGAGAGAATAAGTAGAACCCACCAGACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACACGTGATGTTTGGAGAGAGAATAAGTAGAACCCACCAGACAGTG  750

seq1  AGAAGTGCTTACATTCCAGCTGTGCAATGCTTCATTGGTCTTGTGTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCTTACATTCCAGCTGTGCAATGCTTCATTGGTCTTGTGTCTTT  800

seq1  GCTGATCTCCAATTCATTGAGAGAGTCACAACAGAGAAGTTCTCTGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTCCAATTCATTGAGAGAGTCACAACAGAGAAGTTCTCTGTGAA  850

seq1  TTCTGGCTGGTTCTGGTCTTTCCTGCTGACTCATGCCAATTTGACAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTGGTTCTGGTCTTTCCTGCTGACTCATGCCAATTTGACAGAGG  900

seq1  CCTGGGTGTTTCTGCTGGATCATGCCACAGCTGCTGATTTATGTTTGGTG  950
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  CCTGGGTGTTTCTGCTGGATCATG-CAAAGCTGCTGATTTATGTTTGGTG  949

seq1  ACTCTTCTTTTTTATTTTAAGATTTATTTATTATATGTAAGCAACTGTAG  1000
      ||||||| |||||||||| ||||||||| |||||||||||||||||||||
seq2  ACTCTTC-TTTTTATTTT-AGATTTATTAATTATATGTAAGCAACTGTAG  997

seq1  CTGTCTTGAGACACTTTTCTTTCTCTCTCCAGCCCTGCTCACTCTAGCCC  1050
      ||||||||||||||||||  |||||| | |||||||||||||||||| ||
seq2  CTGTCTTGAGACACTTTTTCTTCTCT-TTCAGCCCTGCTCACTCTAG-CC  1045

seq1  AAAGATTTATTTATTATTATATGTAAGTGCACTGTAGTTGTCTTCAGACA  1100
      ||||||||||||| ||||| ||   |||||||||||| |||||    | |
seq2  AAAGATTTATTTA-TATTA-ATAGTAGTGCACTGTAG-TGTCT---CAAA  1089

seq1  CCACAGAAAAGGGCATCAGATCTCACTATGGATTATTATGAGCCACCAT  1149
      |||||||||   |||||  ||||| ||| ||||||||||||||| ||||
seq2  CCACAGAAA--TGCATCGAATCTC-CTA-GGATTATTATGAGCC-CCAT  1133

seq1: chr9_33026641_33027162
seq2: B6Ng01-028N10.g_67_501 (reverse)

seq1  GATGAGTATAGGCTCCTTCTCCTAGAAACCTCCGCTGATTGATCTTTTTT  50
      |||||| | ||||||||| ||||||| ||||||||| |||||||||| ||
seq2  GATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGATCTTTCTT  50

seq1  CTTTTCC------------TTCCTTCTAATCTCTCCCCAGGTATTCTTAC  88
      |||||||            || ||||||||||||| |||||||||| |||
seq2  CTTTTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTATTCCTAC  100

seq1  CTGACCTAAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  138
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  150

seq1  TTATTTTGTGTACCATATTTCCTCTTTGCTCCTACTCTCTCTCCCCGCTT  188
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  TTATTTTGTGTACCATATTTCCTCTTTGTTCCTACTCTCTCTCCCCACTT  200

seq1  TACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCCCTGCCT  238
      |||||||||||| ||| ||||||||||||| ||||   ||  ||||  ||
seq2  TACTTCTGATAGCTTGTCCTGAATTTCATCTAGAA---TCCTCCCTATCT  247

seq1  TAACCACTTGATAACATGTGAAAAGGAACAAAAAGGCTCCTAACACTAGA  288
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  TAACCACTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACACCAGA  297

seq1  GAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTTTACTTC  338
       ||| |||||||||||||               |||| ||||||||||||
seq2  AAAAATTCAAGGCCAAAC---------------ATTTTCCACTTTACTTC  332

seq1  TGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACTTACCTT  388
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  TGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGATCAGACTTACCTC  382

seq1  GTAAAGCTATACTTACTGGTACCCCTATTCCCCAGCTGAAGAGTTCTGAA  438
      |||||||| |||| |||||||| |   ||||||||||||| |||||||||
seq2  GTAAAGCTGTACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGTTCTGAA  432

seq1  TTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCAT  488
      |||                                               
seq2  TTC-----------------------------------------------  435

seq1  TACCACCGTTCCCCAGCTGAAGAGTTCTGAATTC  522
                                        
seq2  ----------------------------------  435