BAC Information

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BAC

Clone NameB6Ng01-028P22
Chromosome2 (Build37)2 (Build37)
Map Location 142,776,491 - 142,777,698168,136,462 - 168,136,514
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028P22.bB6Ng01-028P22.g
ACCDH859320DH859321
length956662
definitionDH859320|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P22, 5' end.DH859321|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,491 - 142,777,698)(168,136,462 - 168,136,514)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcaggacttgaagttttatcataca
gatctttcacttccttcgttagagtcacgctatatcctttgctcttttct
gctttt
gaattctttgtttagctctgtaccccatttttaatagggttatttggttc
tctggagtctaatcttgagttctttgattatattatgttaatatctttgg
atattattcctctgttggatgtagggttggtaaaatctttttccaatctg
ttggttgctattttgtcctactaacagtgtcctttgccttactgaaaatt
tgtaattttatgaggtctcatttgtcatagtcaccaaacccaaacactac
tgtggatgcccaacaagtgcttggtgacaagagcctgatatagctgtctc
ctgagaggctctgtcagttcctgacatattcagaggtagatgctatcagg
cacccattggaccgatcacaaggtccccaatggaggacctagagaaagga
cagaaggagctgaaggagcttgtagccccataggagaaataaccatatgt
accaaccagtatccccaaacttcccaacaactaaaccaaacaatacccat
ggagggacgcatggctccaactgcatatgtagcagagtatggcctttttg
gacatcagtgggaggagtggcccttggtcctgagaaggcttgatgcccca
gtgtaggggaatcccaagacagggaagcagagtgggtgggttggttaaca
gggggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776491_142777698
seq2: B6Ng01-028P22.b_45_792 (reverse)

seq1  AATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCA  50

seq1  TCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAA  100
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  TCTGGAATAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAA  100

seq1  AGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGC  150

seq1  AATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACC  200

seq1  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  250

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCAT  300
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TTGATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAGCAT  300

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  350

seq1  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  400

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  450

seq1  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAA  500
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAA  500

seq1  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  550

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  600
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAG  600

seq1  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  650
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  650

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAA  700

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGA  750
      |||||||||||| ||||||||||||||||| ||            ||| |
seq2  TCAAATAACCCCCTTAAAAAATGGGGCTCAGAA----------CTGAACA  740

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  800
      ||||    |||                                       
seq2  AAGA----ATTC--------------------------------------  748

seq1  AGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  850
                                                        
seq2  --------------------------------------------------  748

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  900
                                                        
seq2  --------------------------------------------------  748

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTC  950
                                                        
seq2  --------------------------------------------------  748

seq1  CTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  1000
                                                        
seq2  --------------------------------------------------  748

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATA  1050
                                                        
seq2  --------------------------------------------------  748

seq1  AGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAA  1100
                                                        
seq2  --------------------------------------------------  748

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  1150
                                                        
seq2  --------------------------------------------------  748

seq1  CCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACA  1200
                                                        
seq2  --------------------------------------------------  748

seq1  AAGAATTC  1208
              
seq2  --------  748

seq1: chr2_168136462_168136514
seq2: B6Ng01-028P22.g_680_724 (reverse)

seq1  TCCTCCTCCCCACCTCCCCTGTTCACCAACCCACCCACTCAAGCTTCCCT  50
      ||||||||       |||||||| ||||||||||||||||  ||||||||
seq2  TCCTCCTC-------CCCCTGTTAACCAACCCACCCACTC-TGCTTCCCT  42

seq1  GTC  53
      |||
seq2  GTC  45