BAC Information

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BAC

Clone NameB6Ng01-029A07
Chromosome2 (Build37)
Map Location 126,415,442 - 126,538,568
singlet/doubletdoublet
Overlap geneHdc, Gabpb1, Usp8, LOC100043714
Upstream geneCep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2
Downstream geneUsp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029A07.bB6Ng01-029A07.g
ACCDH859336DH859337
length1,1681,136
definitionDH859336|Mus musculus domesticus DNA, BAC clone: B6Ng01-029A07, 5' end.DH859337|Mus musculus domesticus DNA, BAC clone: B6Ng01-029A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,415,442 - 126,416,634)(126,537,410 - 126,538,568)
sequence
gaattcaagacagtgtctcactgtgtagcccagccatccttaatttcatc
atcctcctgtcttagtgtttctactactgcaacaaaacaccatgaccaag
caagccaagtgggaaagagtttattcagcttacacttccaaattgctgtt
catcatctaacatagtcaggacaggaactcacacagggcaggatgctgaa
ggcagaagcggatgcagaggctatggaaggatgctatgtactgacttgct
cctcgtggcttgctcagcctgctttctttcttttcttttctttttttttt
ttaagatttatttgccaggcatggtggcacacgcctttaatcccagcact
tgggtggcagaggcaggcgagtttctgagttcgagtccagcctggtctac
agagtgagttccaggacagccaaggctacacagagaaaccctgtctcgaa
aaaccaaaaaaagaaaaaagaaaaaaaaaagatttatttatttatttcat
gtatgtggggatatagtcgctgtcttcagacacactgaagtggcattgga
tgctcattacggatggttgtgagccaccatgtggttgctaggaattgaac
tcaggacctctggaagagcagtcagggctctcaatggctgagccgtctct
ccagcccctcaggctgctttcttatagaacccaggaccacctgcctgggg
tggcaccacccataatgggccgggccctcccctattgatcactatttgag
aaaaggtcttacagctagatctcatggaggtattttctcaactaggctcc
atcgtctctggtgactctaagcttttttcagttgaagtgcttttgccgta
atgactgaatcatctttcccaccttccctcccctcttacagtgacttcta
agaagtcttgagactcaaatcactatctctattatgtctagctatataca
ttcctgagcacgtatgtgcataagagactccaggactgccagtgagatgg
atatatcccatccttgtacatttcccaatatttgggatggtctggcatat
tgtcagcacgtggaaatacaaaatctgttcttgcttgatgaccacagtgg
gaatatcagaatgcttttagagttcagtaggggaacgccaggcacaagtg
ggagtggtgtaggtaggg
gaattcaagccagcctaagctacacagcaagacaatgtctcaaaacaaaa
caagaacttgatagctcacatgatggcagtgctattccaaatacagtcca
aagaccaacactggcctggggagctatgagctgttctgtaacaaaataag
ctcatgatagaatacaaaccaaaaagcagacaccttttacagttcccaaa
cttccagtctaaggcgagcttttacatcctagagaaaacagaagactgcg
cagggctacataacgcagccacgtctcagcacggaaggcaaggtggaacc
ttaagggattcagactcggaacacacttttctaagagatacagaaaacag
ggcttgatggtcacaaatgtcttactctggttaacaagagttaatattta
tgaaataataagtcaacaatcaattgctctactacatattaatatgaacc
aggtcactagctgaactcaaggaaaggaaaatccagttcagctagacgga
gagagcttcagccaggccacagtgtcttctttaatgctggccccttcctt
tcagggtggcttaagcttcccccgctgtgtctgacagttcttggagttca
tgtcttagtcttgagtcctacactgctcactacctatactgctaggtcag
tacagtttttggcccaaataacaaattggctgaaatgatgagagacgagg
tgagaaaggcagcatttgagaagggaagcaccatagagacataaagtgag
aaattactgagaaaactgccttacattgccttacaatgtggacaagtagg
gtaaacgataggaatcatgaagcaataatagctgggatcaaagaagccca
ctgataatatgatggatcctgactctatcttaataatcctgtcaacactt
agtagctgcttcataaaagtaaatactgtcacagaatggagggcttgaga
agacatttgacagtcagtactgcctcagatggccaaatggaataatacaa
gatggattggataaggaacaatactccggaagaaaagttagagagtactg
caggaagaacaaataggccacctaattgcgattatgattacttgaaaatt
ttcacttgcttactacctatttcctttggaaagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126415442_126416634
seq2: B6Ng01-029A07.b_48_1215

seq1  GAATTCAAGACAGTGTCTCACTGTGTAGCCCAGCCATCCTTAATTTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACAGTGTCTCACTGTGTAGCCCAGCCATCCTTAATTTCATC  50

seq1  ATCCTCCTGTCTTAGTGTTTCTACTACTGCAACAAAACACCATGACCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTGTCTTAGTGTTTCTACTACTGCAACAAAACACCATGACCAAG  100

seq1  CAAGCCAAGTGGGAAAGAGTTTATTCAGCTTACACTTCCAAATTGCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAGTGGGAAAGAGTTTATTCAGCTTACACTTCCAAATTGCTGTT  150

seq1  CATCATCTAACATAGTCAGGACAGGAACTCACACAGGGCAGGATGCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTAACATAGTCAGGACAGGAACTCACACAGGGCAGGATGCTGAA  200

seq1  GGCAGAAGCGGATGCAGAGGCTATGGAAGGATGCTATGTACTGACTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGCGGATGCAGAGGCTATGGAAGGATGCTATGTACTGACTTGCT  250

seq1  CCTCGTGGCTTGCTCAGCCTGCTTTCTTTCTTTTCTTTTCTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGGCTTGCTCAGCCTGCTTTCTTTCTTTTCTTTTCTTTTTTTTTT  300

seq1  TTAAGATTTATTTGCCAGGCATGGTGGCACACGCCTTTAATCCCAGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTTATTTGCCAGGCATGGTGGCACACGCCTTTAATCCCAGCACT  350

seq1  TGGGTGGCAGAGGCAGGCGAGTTTCTGAGTTCGAGTCCAGCCTGGTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGCAGAGGCAGGCGAGTTTCTGAGTTCGAGTCCAGCCTGGTCTAC  400

seq1  AGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCGAA  450

seq1  AAACCAAAAAAAGAAAAAAGAAAAAAAAAAGATTTATTTATTTATTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAAAGAAAAAAGAAAAAAAAAAGATTTATTTATTTATTTCAT  500

seq1  GTATGTGGGGATATAGTCGCTGTCTTCAGACACACTGAAGTGGCATTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGGGGATATAGTCGCTGTCTTCAGACACACTGAAGTGGCATTGGA  550

seq1  TGCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTAGGAATTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTAGGAATTGAAC  600

seq1  TCAGGACCTCTGGAAGAGCAGTCAGGGCTCTCAATGGCTGAGCCGTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTCTGGAAGAGCAGTCAGGGCTCTCAATGGCTGAGCCGTCTCT  650

seq1  CCAGCCCCTCAGGCTGCTTTCTTATAGAACCCAGGACCACCTGCCTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCTCAGGCTGCTTTCTTATAGAACCCAGGACCACCTGCCTGGGG  700

seq1  TGGCACCACCCATAATGGGCCGGGCCCTCCCCTATTGATCACTATTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCACCCATAATGGGCCGGGCCCTCCCCTATTGATCACTATTTGAG  750

seq1  AAAAGGTCTTACAGCTAGATCTCATGGAGGTATTTTCTCAACTAGGCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCTTACAGCTAGATCTCATGGAGGTATTTTCTCAACTAGGCTCC  800

seq1  ATCGTCTCTGGTGACTCTAAGCTTTTTTCAGGTTGAAGTGCTTTTGCCGT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCGTCTCTGGTGACTCTAAGCTTTTTTCA-GTTGAAGTGCTTTTGCCGT  849

seq1  AAATGACTGAATCATCTTTCCCACCCTTCCCTCCCCTCTTACAGTGACTT  900
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  -AATGACTGAATCATCTTTCCCA-CCTTCCCTCCCCTCTTACAGTGACTT  897

seq1  CTAAGAAGTCTTGAGACTCAAATCACTATCTCTATTATGTCTAGCTATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGTCTTGAGACTCAAATCACTATCTCTATTATGTCTAGCTATAT  947

seq1  ACATTTCCTGAGCACGTAATGTGCATAAGAGACTCCAGGACTGCCAGTGA  1000
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACA-TTCCTGAGCACGT-ATGTGCATAAGAGACTCCAGGACTGCCAGTGA  995

seq1  GAATGGATATATCCCATCCTTGTACATTTTCCCAATAATTTGGAATGGTT  1050
      | |||||||||||||||||||||||| ||||||||| |||||| |||| |
seq2  G-ATGGATATATCCCATCCTTGTACA-TTTCCCAAT-ATTTGGGATGG-T  1041

seq1  CTTGCTATTTGTCAGCACGTGGAAATTACAAAATCCTGTCCTTGCTTGAT  1100
      || ||   ||||||||||||||||| |||||||| |||| ||||||||| 
seq2  CTGGCATATTGTCAGCACGTGGAAA-TACAAAAT-CTGTTCTTGCTTGA-  1088

seq1  TGATCCACCAGTGAGAAATTTAACCCAAGACTGCTTTTAAGAGTTTCATG  1150
      ||| ||| ||||| |||   || |   ||| ||||||| |||| |||| |
seq2  TGA-CCA-CAGTGGGAA---TATC---AGAATGCTTTT-AGAG-TTCA-G  1127

seq1  TAGGGGAACGCCAGGGCCAAGAAGTGGGAGTGG-GTAGGTAGGG  1193
      |||||||||||||||    | |||||||||||| ||||||||||
seq2  TAGGGGAACGCCAGG---CACAAGTGGGAGTGGTGTAGGTAGGG  1168

seq1: chr2_126537410_126538568
seq2: B6Ng01-029A07.g_68_1203 (reverse)

seq1  TTGCTTTTCACAGAAGGAAAATAGGGTAATGTAAGCAAGTGAAAATATTC  50
      ||||||| ||   |||| ||||| ||||  |||||||||||||||| |||
seq2  TTGCTTTCCA---AAGG-AAATA-GGTA--GTAAGCAAGTGAAAATTTTC  43

seq1  AAGTTTAATCACTAAATCGCCAAATTAGTGTGCCTAATTTGTTCTTTCCT  100
      |||  ||||||   ||||||  |||||| ||| |  |||||||| |||||
seq2  AAG--TAATCA--TAATCGC--AATTAG-GTGGCCTATTTGTTC-TTCCT  85

seq1  GCAGTGACTTTCTAACTATTCTTTCCTGTAGTATTGTTTCCTTATTCAAA  150
      ||||| ||| ||||||| |||||  | | ||||||| ||||||| || ||
seq2  GCAGT-ACTCTCTAACTTTTCTT--CCGGAGTATTG-TTCCTTA-TCCAA  130

seq1  TCCATCTTGTATATATCCATTTTGGCCATCCTGAGGCAGTACTGACTTGT  200
      |||||||||||| ||| |  ||||||||| |||||||||||||||| |||
seq2  TCCATCTTGTAT-TATTCCATTTGGCCAT-CTGAGGCAGTACTGAC-TGT  177

seq1  CAAATGTCTTCTCAAGCCCTCCATTCTGTGACAGTATTTACTTTTATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCTTCTCAAGCCCTCCATTCTGTGACAGTATTTACTTTTATGAA  227

seq1  GCAGCTACTAAGTGTTGACAGGATTATTAAGATAGAGTCAGGATCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTACTAAGTGTTGACAGGATTATTAAGATAGAGTCAGGATCCATCA  277

seq1  TATTATCAGTGGGCTTCTTTGATCCCAGCTATTATTGCTTCATGATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCAGTGGGCTTCTTTGATCCCAGCTATTATTGCTTCATGATTCCT  327

seq1  ATCGTTTACCCTACTTGTCCACATTGTAAGGCAATGTAAGGCAGTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTTACCCTACTTGTCCACATTGTAAGGCAATGTAAGGCAGTTTTCT  377

seq1  CAGTAATTTCTCACTTTATGTCTCTATGGTGCTTCCCTTCTCAAATGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTTCTCACTTTATGTCTCTATGGTGCTTCCCTTCTCAAATGCTG  427

seq1  CCTTTCTCACCTCGTCTCTCATCATTTCAGCCAATTTGTTATTTGGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCACCTCGTCTCTCATCATTTCAGCCAATTTGTTATTTGGGCCA  477

seq1  AAAACTGTACTGACCTAGCAGTATAGGTAGTGAGCAGTGTAGGACTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTACTGACCTAGCAGTATAGGTAGTGAGCAGTGTAGGACTCAAG  527

seq1  ACTAAGACATGAACTCCAAGAACTGTCAGACACAGCGGGGGAAGCTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACATGAACTCCAAGAACTGTCAGACACAGCGGGGGAAGCTTAAG  577

seq1  CCACCCTGAAAGGAAGGGGCCAGCATTAAAGAAGACACTGTGGCCTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGAAAGGAAGGGGCCAGCATTAAAGAAGACACTGTGGCCTGGCT  627

seq1  GAAGCTCTCTCCGTCTAGCTGAACTGGATTTTCCTTTCCTTGAGTTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCTCTCCGTCTAGCTGAACTGGATTTTCCTTTCCTTGAGTTCAGC  677

seq1  TAGTGACCTGGTTCATATTAATATGTAGTAGAGCAATTGATTGTTGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACCTGGTTCATATTAATATGTAGTAGAGCAATTGATTGTTGACTT  727

seq1  ATTATTTCATAAATATTAACTCTTGTTAACCAGAGTAAGACATTTGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCATAAATATTAACTCTTGTTAACCAGAGTAAGACATTTGTGAC  777

seq1  CATCAAGCCCTGTTTTCTGTATCTCTTAGAAAAGTGTGTTCCGAGTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGCCCTGTTTTCTGTATCTCTTAGAAAAGTGTGTTCCGAGTCTGA  827

seq1  ATCCCTTAAGGTTCCACCTTGCCTTCCGTGCTGAGACGTGGCTGCGTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTAAGGTTCCACCTTGCCTTCCGTGCTGAGACGTGGCTGCGTTAT  877

seq1  GTAGCCCTGCGCAGTCTTCTGTTTTCTCTAGGATGTAAAAGCTCGCCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTGCGCAGTCTTCTGTTTTCTCTAGGATGTAAAAGCTCGCCTTA  927

seq1  GACTGGAAGTTTGGGAACTGTAAAAGGTGTCTGCTTTTTGGTTTGTATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAGTTTGGGAACTGTAAAAGGTGTCTGCTTTTTGGTTTGTATTC  977

seq1  TATCATGAGCTTATTTTGTTACAGAACAGCTCATAGCTCCCCAGGCCAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGAGCTTATTTTGTTACAGAACAGCTCATAGCTCCCCAGGCCAGT  1027

seq1  GTTGGTCTTTGGACTGTATTTGGAATAGCACTGCCATCATGTGAGCTATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCTTTGGACTGTATTTGGAATAGCACTGCCATCATGTGAGCTATC  1077

seq1  AAGTTCTTGTTTTGTTTTGAGACATTGTCTTGCTGTGTAGCTTAGGCTGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTGTTTTGTTTTGAGACATTGTCTTGCTGTGTAGCTTAGGCTGG  1127

seq1  CTTGAATTC  1159
      |||||||||
seq2  CTTGAATTC  1136