BAC Information

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BAC

Clone NameB6Ng01-029H09
Chromosome2 (Build37)
Map Location 154,824,876 - 154,918,444
singlet/doubletdoublet
Overlap genea, Ahcy
Upstream geneEG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
Downstream geneItch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029H09.bB6Ng01-029H09.g
ACCDH859658DH859659
length1,108996
definitionDH859658|Mus musculus domesticus DNA, BAC clone: B6Ng01-029H09, 5' end.DH859659|Mus musculus domesticus DNA, BAC clone: B6Ng01-029H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,917,320 - 154,918,444)(154,824,876 - 154,825,515)
sequence
gaattctctatgtagaccaggttggccctgaactgtcagagatccttcag
ccgctgccttccaagtgctgggattaaaggaatacaccagcacacctggc
tcaaatgcttcttatctaggaaatgtgtttttaaaagatcacagtacatg
gcttggatggctttgaactcactaagtagcccaggctggactcaaattct
taattctccttcctcagcatccaaaatactggcgttacaggtaagtgcca
ccatgcctatttgaaacattactttctttttttttttttttttaaagatt
tatttatttattatatgtaagtacactgtagctgtcttcagacactccag
aagagggagtcagatctcgttacggatggttgtgagccaccatgtggttg
ctgggatttgaactcctgaccttcggaagagcagtcgggtgctcttaccc
gctgagccatctcaccagcccgaaacattactttcttaatcctcttcatt
tttcttttcttttctgcttcgtgtactgagtctaattttgctgaccttca
agcactgagctaagtgatgggcagagaacaatgttagtcatggaaaattt
tttactaggcagttggagtcaaagtggggagacatctgagaaaatctcct
ttctttgaaactggatctcggatagcgcatgctgctctggaagtagacac
agagagacaagagtgaccctgaactccttattctctttgctggcttggag
attttctttccttgatacaaaatagtagaaggctgctgaggccctctctt
ctgcttctggacactgtcctaaagataagatagttcagtttcagtagctg
tctgctgagcttgtgagaagctagtctgatggctcagctaatgcctggtg
atagcagaatatggagaaagaacctgggtcgtggtggaagctacagatct
gctactaaataatggacccggacctgccaagtactggctcttgtaatcag
ggattaaacgtcttcatttctgagcctctgcagctggacttagacaattt
gtagcaacttctgagtagagtgtggaggttaggtcaaagggtggccgagt
aaagctga
gaattctcaggagcctggactacaggggcttctctcttttgttggtgctg
ccgagagtggaggcagggaaactcgtgtgctattggtggggaagtgaagt
aggtcaccagtctggaaatcagaacggagattccttaaagattaaattaa
acctcccaaagattcgtctctaccactcctgggtatgcactgagggactc
caaatcaccctccactagtgctacctgcacactagtgcactatccatggt
atcattgctcactcactactcatggtatcactattcacaagtgctgagtc
acatggtcagcctagatgctcataaacagctgaatgaataaagaaaacac
ggagtgttactatgccacaaaaaagaataaaattaccttgtctgtaggaa
aatggacgggactggagattatgttaaacaaaataagccagactcggaga
cacgagtatcccacattttctcatattgttatggggcatccaccagagaa
gattgctacgacatgggtttaagccaacaaaaagtctttattagccagct
ggccagtgactacactaggtgttgggatcctagtgtaacaacaagtcttt
tccagggtgagcttttaagcataaaaaaattatattctgtattgacatac
ttccattaacaagaacagttagccagaagcagagctatagaagccaaaag
gtgaggttagtagatttggtggcattgccagagctagagctttggtgatc
aggcctttgttttggttttagcagtggtgcggttggtgcggtctacatgc
tgagttttatggtgtgaatggtacttccttcatagaatcagttgtgccga
ggtctgagggcccagtatgtggaatctagaaaaaagtaaggggtcaatag
tgtaagtcagaggggtactattagggggaaagaagaggaagatcagagag
aagaaagcatgggggttcagaatcaagtacgtggacttactactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154917320_154918444
seq2: B6Ng01-029H09.b_44_1151 (reverse)

seq1  TCAGCCTTTTACTCTGTGGCCACACTTTGGACCTTAACCTCCACAACTCT  50
      |||||  |||||||   |||||| |||| |||| |||||||||| |||||
seq2  TCAGC--TTTACTC---GGCCACCCTTT-GACC-TAACCTCCAC-ACTCT  42

seq1  ACTCAGAAGTTTGCTACAAATTGTCTAAAGTCCAGCTGCAGAGGGCTCAG  100
      ||||||||| |||||||||||||||| ||||||||||||||| |||||||
seq2  ACTCAGAAG-TTGCTACAAATTGTCT-AAGTCCAGCTGCAGA-GGCTCAG  89

seq1  AAATGGAAGGACGTTTTAATCCCTGATTTACAAGAGCCAGTACTTGGCAG  150
      |||||  | |||| |||||||||||| |||||||||||||||||||||||
seq2  AAATG--AAGACG-TTTAATCCCTGA-TTACAAGAGCCAGTACTTGGCAG  135

seq1  GTTCCGGGTCCATTAATTTAGTAGCAGATCTGTAGCTTCCACCACGACCC  200
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  G-TCCGGGTCCATT-ATTTAGTAGCAGATCTGTAGCTTCCACCACGACCC  183

seq1  AGGTTCTTTCTCCATATTCTGCTATCACCAGGCATTAGCTGGGCCATCAG  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGTTCTTTCTCCATATTCTGCTATCACCAGGCATTAGCTGAGCCATCAG  233

seq1  ACTAGCTTCTCACAAGCTCAGCAGACAGCTACTGAAACTGAACTATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTTCTCACAAGCTCAGCAGACAGCTACTGAAACTGAACTATCTTA  283

seq1  TCTTTAGGACAGTGTCCAGAAGCAGAAGAGAGGGCCTCAGCAGCCTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGACAGTGTCCAGAAGCAGAAGAGAGGGCCTCAGCAGCCTTCTA  333

seq1  CTATTTTGTATCAAGGAAAGAAAATCTCCAAGCCAGCAAAGAGAATAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGTATCAAGGAAAGAAAATCTCCAAGCCAGCAAAGAGAATAAGG  383

seq1  AGTTCAGGGTCACTCTTGTCTCTCTGTGTCTACTTCCAGAGCAGCATGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGGGTCACTCTTGTCTCTCTGTGTCTACTTCCAGAGCAGCATGCG  433

seq1  CTATCCGAGATCCAGTTTCAAAGAAAGGAGATTTTCTCAGATGTCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCGAGATCCAGTTTCAAAGAAAGGAGATTTTCTCAGATGTCTCCCC  483

seq1  ACTTTGACTCCAACTGCCTAGTAAAAAATTTTCCATGACTAACATTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGACTCCAACTGCCTAGTAAAAAATTTTCCATGACTAACATTGTTC  533

seq1  TCTGCCCATCACTTAGCTCAGTGCTTGAAGGTCAGCAAAATTAGACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCATCACTTAGCTCAGTGCTTGAAGGTCAGCAAAATTAGACTCAG  583

seq1  TACACGAAGCAGAAAAGAAAAGAAAAATGAAGAGGATTAAGAAAGTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGAAGCAGAAAAGAAAAGAAAAATGAAGAGGATTAAGAAAGTAATG  633

seq1  TTTCGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCGACTGCTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCGACTGCTCTTC  683

seq1  CGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  733

seq1  CCGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAG  783

seq1  TGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAG  833

seq1  AAAGTAATGTTTCAAATAGGCATGGTGGCACTTACCTGTAACGCCAGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATGTTTCAAATAGGCATGGTGGCACTTACCTGTAACGCCAGTAT  883

seq1  TTTGGATGCTGAGGAAGGAGAATTAAGAATTTGAGTCCAGCCTGGGCTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGCTGAGGAAGGAGAATTAAGAATTTGAGTCCAGCCTGGGCTAC  933

seq1  TTAGTGAGTTCAAAGCCATCCAAGCCATGTACTGTGATCTTTTAAAAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAGTTCAAAGCCATCCAAGCCATGTACTGTGATCTTTTAAAAACA  983

seq1  CATTTCCTAGATAAGAAGCATTTGAGCCAGGTGTGCTGGTGTATTCCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTAGATAAGAAGCATTTGAGCCAGGTGTGCTGGTGTATTCCTTT  1033

seq1  AATCCCAGCACTTGGAAGGCAGCGGCTGAAGGATCTCTGACAGTTCAGGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTTGGAAGGCAGCGGCTGAAGGATCTCTGACAGTTCAGGG  1083

seq1  CCAACCTGGTCTACATAGAGAATTC  1125
      |||||||||||||||||||||||||
seq2  CCAACCTGGTCTACATAGAGAATTC  1108

seq1: chr2_154824876_154825515
seq2: B6Ng01-029H09.g_433_1063

seq1  CACAAAAAAGAATAAAATTACCTTGTCTGTAGGAAAATGGACGGGACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAAGAATAAAATTACCTTGTCTGTAGGAAAATGGACGGGACTGG  50

seq1  AGATTATGTTAAACAAAATAAGCCAGACTCGGAGACACGAGTATCCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGTTAAACAAAATAAGCCAGACTCGGAGACACGAGTATCCCACA  100

seq1  TTTTCTCATATTGTTATGGGGCATCCACCAGAGAAGATTGCTACGACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATATTGTTATGGGGCATCCACCAGAGAAGATTGCTACGACATG  150

seq1  GGTTTAAGCCAACAAAAAGTCTTTATTAGCCAGCTGGCCAGTGACTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAGCCAACAAAAAGTCTTTATTAGCCAGCTGGCCAGTGACTACAC  200

seq1  TAGGTGTTGGGATCCTAGTGTAACAACAAGTCTTTTCCAGGGTGAGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTGGGATCCTAGTGTAACAACAAGTCTTTTCCAGGGTGAGCTTT  250

seq1  TAAGCATAAAAAAATTATATTCTGTATTGACATACTTCCATTAACAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATAAAAAAATTATATTCTGTATTGACATACTTCCATTAACAAGAA  300

seq1  CAGTTAGCCAGAAGCAGAGCTATAGAAGCCAAAAGGTGAGGTTAGTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGCCAGAAGCAGAGCTATAGAAGCCAAAAGGTGAGGTTAGTAGAT  350

seq1  TTGGTGGCATTGCCAGAGCTAGAGCTTTGGTGATCAGGCCTTTGTTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCATTGCCAGAGCTAGAGCTTTGGTGATCAGGCCTTTGTTTTGG  400

seq1  TTTTAGCAGGTGGTGCGGTTGGTGCGGTCTACATGCTGAGTTTTATGGTG  450
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCA-GTGGTGCGGTTGGTGCGGTCTACATGCTGAGTTTTATGGTG  449

seq1  TGAATGGTACTTCCTTCATAGAATCAGTTGTGCCGAGGTCTGAGGGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGAATGGTACTTCCTTCATAGAATCAGTTGTGCCGAGGTCTGA-GGGCCC  498

seq1  AGTATGTGGAATCTAGAAAAAAGGTAAGGGGTCAATAAGTGTAAGTCAGA  550
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  AGTATGTGGAATCTAGAAAAAA-GTAAGGGGTCAAT-AGTGTAAGTCAGA  546

seq1  GGGGGTACTATTAGGGGGAAAGAAGAGGAAGATCAGAGAGAAGAGAGCAA  600
       ||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  -GGGGTACTATTAGGGGGAAAGAAGAGGAAGATCAGAGAGAAGAAAGCA-  594

seq1  TGGGGGGTTCAGAATCAAAGTACGCGGCACTTACTACTGT  640
        |||||||||||||| ||||||| || ||||||||||||
seq2  -TGGGGGTTCAGAATC-AAGTACGTGG-ACTTACTACTGT  631