BAC Information

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BAC

Clone NameB6Ng01-029O09
Chromosome2 (Build37)
Map Location 25,234,991 - 25,374,993
singlet/doubletdoublet
Overlap geneEntpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2
Upstream genePsd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik
Downstream geneEdf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029O09.bB6Ng01-029O09.g
ACCDH859961DH859962
length1,0241,071
definitionDH859961|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O09, 5' end.DH859962|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,373,972 - 25,374,993)(25,234,991 - 25,236,093)
sequence
gaattcctatgtgcgggatgatgcgatcttcatcaaagctattgtggacc
taacaggactctagccacccctgctaagaatagcagctcagtgaggagct
gtcacattaggccagccaggccctgccacacacgggtgggcaggcttggt
gtaaatgctggggagggcctcagcctagagccaatcaccatcacacagaa
aggcaggaagaagcctccagttggccttcagctggcaaactgagttggac
ggtccactgagctcaagggcctggtggagcccgctggggagcttctcagc
tttccaataggaaagctcctgctgtctcctctgtctggggaagggagaga
cctgtaggtgggtgctcagaaagggcctctccagagagagtctcaagagc
tgcagcaggagcaaagtgactggccttccccaccccatcctttggaaaag
aggtagcggctacacaggagaaggcatgcgcctgcagggtgtagcccaag
agagaagctctctgagacataggccctcactggagaagggcctgcctggg
ctgcacagccttgccaggtggcctgtatgggggagaagtgattaaatgtt
gagatgtctgtgctgagtggtgttcatctggctcctgctgtgtctaggta
gtgatgaccctctggctatcacttctgccttactcattctggacacctct
attccttatatccttcaagcccagtgaccactccattgtgagtctgcctg
ggtagagatgaaggtctgaccttgacctggccaatgtacaggcctttgtc
tcaggatccttgcctgggtttgcacaataggaaatgtggtgggcagcatg
ggtgtgagctgtgagcatgctgtgatggaggtggaaccctgccgggccca
gctgcaacatgcccagctgtgagcatgctgtgatggaggtggatcctgcc
cgggcccagctgtaaaatgcccagctgcgagcatgctgtggatggaggag
gagaaacatatgctctctagaccc
gaattcttaaacatgtgaataaggaatagcaggtgcaaaaggtgttacct
ttcaatagagtaaaaggatgtcagacaatgtgaatcaagtagaacttcta
gaaatgaaaaacactgcaagtaagtttccccaacccttcattccagccag
aaaagaactatgtttccagaaagtttaggaagctgttcagaagacaaccc
taagcaaaggacagagggggagccggaggaaccgggggaggtaaaggacc
ttggctgatgggtgaggctgggtatgggagacagaagtgttccgtatgtc
tgcagccctgtgagtatcgtgggctgtgtggaggcatggatagttctgaa
taccattcaacacgaaactgtgagtttactttaagcctaagtttttggtg
ttttgtccatggctgtatctctctgaacatgcctggtctcatctggtggg
atttcttatcccccctgttcttgaacatgagattgtgtgacatcttgtag
atgacatcgtgttccgatgtcagaaggttagacttgccagcccaccatca
gctctgaccatcaagaacaccagcagtaactggagaaggagaaactcaat
cttgcttttacaaggtcacaaaaggaatacaatgaccaaagatgaatcac
ccatcaaaaacccactagagtggcaagaaaacagaagagacttatctaaa
ggaagaaagagaactagccagaaaggaacagggaccgctaggagggcagt
gttgggggcaggtatgaggggatgctggcagtgtgtgtcccggggcgggg
atattgagaacaacagtataatgacgacatgtatagaaatgccttaagaa
tccttatttggtctggattctggcctattgagagcacatggattcgttct
agtcccacatgctagccgattgcagcaggataacactatatacttaaaac
aactaaactaaagggcagtaggtgctgcacttgggaggcgatgccaatgg
atctctagtctaggcagtcgatctttctatccaacctgtctcaaaccaac
gaaacaaccctttttttagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_25373972_25374993
seq2: B6Ng01-029O09.b_48_1071 (reverse)

seq1  GGGTCTAGAGGGCA-GTGTCTCCTCCTCCTCCAT-CACAGCATGCTCGCA  48
      |||||||||| |||  ||| | |||||||||||| |||||||||||||||
seq2  GGGTCTAGAGAGCATATGT-TTCTCCTCCTCCATCCACAGCATGCTCGCA  49

seq1  GCTGGGCATGTTTGCAGCTGGGCCCCGGCAGGGTCCACCTCCATCACAGC  98
      ||||||||| ||| ||||||||||| |||||| |||||||||||||||||
seq2  GCTGGGCAT-TTTACAGCTGGGCCCGGGCAGGATCCACCTCCATCACAGC  98

seq1  ATGCTCACAGCTGGGCATGTTTGCAGCTGGGCCCGGCAGGG-TCCACCTC  147
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  ATGCTCACAGCTGGGCATG-TTGCAGCTGGGCCCGGCAGGGTTCCACCTC  147

seq1  CATCACAGCATGCTCACAGCTCACA-CCATGCTGCCCACCACATTTCCTA  196
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATCACAGCATGCTCACAGCTCACACCCATGCTGCCCACCACATTTCCTA  197

seq1  TTGTGCAAA-CCAGGCAAGGATCCTGAGACAAAGGCCTGTACATTGGCCA  245
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAAACCCAGGCAAGGATCCTGAGACAAAGGCCTGTACATTGGCCA  247

seq1  GGTCAAGGTCAGACCTTCATCTCTACCCAGGCAGACTCACAATGGAGTGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGGTCAGACCTTCATCTCTACCCAGGCAGACTCACAATGGAGTGG  297

seq1  TCACTGGGCTTGAAGGATATAAGGAATAGAGGTGTCCAGAATGAGTAAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGCTTGAAGGATATAAGGAATAGAGGTGTCCAGAATGAGTAAGG  347

seq1  CAGAAGTGATAGCCAGAGGGTCATCACTACCTAGACACAGCAGGAGCCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGATAGCCAGAGGGTCATCACTACCTAGACACAGCAGGAGCCAG  397

seq1  ATGAACACCACTCAGCACAGACATCTCAACATTTAATCACTTCTCCCCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACCACTCAGCACAGACATCTCAACATTTAATCACTTCTCCCCCA  447

seq1  TACAGGCCACCTGGCAAGGCTGTGCAGCCCAGGCAGGCCCTTCTCCAGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCCACCTGGCAAGGCTGTGCAGCCCAGGCAGGCCCTTCTCCAGTG  497

seq1  AGGGCCTATGTCTCAGAGAGCTTCTCTCTTGGGCTACACCCTGCAGGCGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTATGTCTCAGAGAGCTTCTCTCTTGGGCTACACCCTGCAGGCGC  547

seq1  ATGCCTTCTCCTGTGTAGCCGCTACCTCTTTTCCAAAGGATGGGGTGGGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCTCCTGTGTAGCCGCTACCTCTTTTCCAAAGGATGGGGTGGGG  597

seq1  AAGGCCAGTCACTTTGCTCCTGCTGCAGCTCTTGAGACTCTCTCTGGAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGTCACTTTGCTCCTGCTGCAGCTCTTGAGACTCTCTCTGGAGA  647

seq1  GGCCCTTTCTGAGCACCCACCTACAGGTCTCTCCCTTCCCCAGACAGAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTTCTGAGCACCCACCTACAGGTCTCTCCCTTCCCCAGACAGAGG  697

seq1  AGACAGCAGGAGCTTTCCTATTGGAAAGCTGAGAAGCTCCCCAGCGGGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAGGAGCTTTCCTATTGGAAAGCTGAGAAGCTCCCCAGCGGGCT  747

seq1  CCACCAGGCCCTTGAGCTCAGTGGACCGTCCAACTCAGTTTGCCAGCTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGCCCTTGAGCTCAGTGGACCGTCCAACTCAGTTTGCCAGCTGA  797

seq1  AGGCCAACTGGAGGCTTCTTCCTGCCTTTCTGTGTGATGGTGATTGGCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAACTGGAGGCTTCTTCCTGCCTTTCTGTGTGATGGTGATTGGCTC  847

seq1  TAGGCTGAGGCCCTCCCCAGCATTTACACCAAGCCTGCCCACCCGTGTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGAGGCCCTCCCCAGCATTTACACCAAGCCTGCCCACCCGTGTGT  897

seq1  GGCAGGGCCTGGCTGGCCTAATGTGACAGCTCCTCACTGAGCTGCTATTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCCTGGCTGGCCTAATGTGACAGCTCCTCACTGAGCTGCTATTC  947

seq1  TTAGCAGGGGTGGCTAGAGTCCTGTTAGGTCCACAATAGCTTTGATGAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGGGGTGGCTAGAGTCCTGTTAGGTCCACAATAGCTTTGATGAAG  997

seq1  ATCGCATCATCCCGCACATAGGAATTC  1022
      |||||||||||||||||||||||||||
seq2  ATCGCATCATCCCGCACATAGGAATTC  1024

seq1: chr2_25234991_25236093
seq2: B6Ng01-029O09.g_68_1138

seq1  GAATTCTTAAACATGTGAATAAGGAATAGCAGGTGCAAAAGGTGTTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAACATGTGAATAAGGAATAGCAGGTGCAAAAGGTGTTACCT  50

seq1  TTCAATAGAGTAAAAGGATGTCAGACAATGTGAATCAAGTAGAACTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAGAGTAAAAGGATGTCAGACAATGTGAATCAAGTAGAACTTCTA  100

seq1  GAAATGAAAAACACTGCAAGTAAGTTTCCCCAACCCTTCATTCCAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAAAACACTGCAAGTAAGTTTCCCCAACCCTTCATTCCAGCCAG  150

seq1  AAAAGAACTATGTTTCCAGAAAGTTTAGGAAGCTGTTCAGAAGACAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACTATGTTTCCAGAAAGTTTAGGAAGCTGTTCAGAAGACAACCC  200

seq1  TAAGCAAAGGACAGAGGGGGAGCCGGAGGAACCGGGGGAGGTAAAGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAAGGACAGAGGGGGAGCCGGAGGAACCGGGGGAGGTAAAGGACC  250

seq1  TTGGCTGATGGGTGAGGCTGGGTATGGGAGACAGAAGTGTTCCGTATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGATGGGTGAGGCTGGGTATGGGAGACAGAAGTGTTCCGTATGTC  300

seq1  TGCAGCCCTGTGAGTATCGTGGGCTGTGTGGAGGCATGGATAGTTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCTGTGAGTATCGTGGGCTGTGTGGAGGCATGGATAGTTCTGAA  350

seq1  TACCATTCAACACGAAACTGTGAGTTTACTTTAAGCCTAAGTTTTTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTCAACACGAAACTGTGAGTTTACTTTAAGCCTAAGTTTTTGGTG  400

seq1  TTTTGTCCATGGCTGTATCTCTCTGAACATGCCTGGTCTCATCTGGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCATGGCTGTATCTCTCTGAACATGCCTGGTCTCATCTGGTGGG  450

seq1  ATTTCTTATCCCCCCTGTTCTTGAACATGAGATTGTGTGACATCTTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATCCCCCCTGTTCTTGAACATGAGATTGTGTGACATCTTGTAG  500

seq1  ATGACATCGTGTTCCGATGTCAGAAGGTTAGACTTGCCAGCCCACCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATCGTGTTCCGATGTCAGAAGGTTAGACTTGCCAGCCCACCATCA  550

seq1  GCTCTGACCATCAAGAACACCAGCAGTAACTGGAGAAGGAGAAACTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGACCATCAAGAACACCAGCAGTAACTGGAGAAGGAGAAACTCAAT  600

seq1  CTTGCTTTTACAAGGTCACAAAAGGAATACAATGACCAAAGATGAATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTTACAAGGTCACAAAAGGAATACAATGACCAAAGATGAATCAC  650

seq1  CCATCAAAAACCCACTAGAGTGGCAAGAAAACAGAAGAGACTTATCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAAACCCACTAGAGTGGCAAGAAAACAGAAGAGACTTATCTAAA  700

seq1  GGAAGAAAGAGAACTAGCCAG-AAGGAACAGGGACCGCTAGGAGGGCAGT  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAAGAAAGAGAACTAGCCAGAAAGGAACAGGGACCGCTAGGAGGGCAGT  750

seq1  GTTGGGGGCAGGTATGAGGGGATGCTGGCAGTGTGTGTGCCGGGGCAGGG  799
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  GTTGGGGGCAGGTATGAGGGGATGCTGGCAGTGTGTGTCCCGGGGC-GGG  799

seq1  GATATTGAGAACAAACAGTATAATGACGCACATGTATAGAAATGCCATTA  849
      |||||||||||| ||||||||||||||| ||||||||||||||||| |||
seq2  GATATTGAGAAC-AACAGTATAATGACG-ACATGTATAGAAATGCC-TTA  846

seq1  AGAATCCATTATTTGGGCTGGATTCTGGCCTATTGAGAGCACATGGATTC  899
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  AGAATCC-TTATTTGGTCTGGATTCTGGCCTATTGAGAGCACATGGATTC  895

seq1  AGTTCCTAGTACCCACATGCTAGCCAGACTTGCAAGCAGGAATAACACTA  949
       ||| ||||| |||||||||||||| || |||| |||||| |||||||| 
seq2  -GTT-CTAGT-CCCACATGCTAGCC-GA-TTGC-AGCAGG-ATAACACT-  937

seq1  ATATACATAAAAAACAAACTAAACTAAAAGGCACAGTAGGGTGCCTGCAC  999
      |||||| |||||    |||||||||||| ||  ||||| |||| ||||||
seq2  ATATACTTAAAA---CAACTAAACTAAAGGG--CAGTA-GGTG-CTGCAC  980

seq1  TTGGGAGGCAGATGCAAATGGATCTCTAAGTTCTAGGCCAGTCAGAGCTA  1049
      ||||||||| ||||| ||||||||||||   |||||| ||||| || || 
seq2  TTGGGAGGC-GATGCCAATGGATCTCTA--GTCTAGG-CAGTC-GATCTT  1025

seq1  CATAGCCAGATCCTGTCTCAAAAGCAAAGCAAACAAAACCCCTTATTTTT  1099
        || ||  | |||||||||||  | ||  ||||||   ||||| |||||
seq2  TCTATCC--AACCTGTCTCAAA--CCAACGAAACAA---CCCTT-TTTTT  1067

seq1  AGAT  1103
      ||||
seq2  AGAT  1071