BAC Information

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BAC

Clone NameB6Ng01-030A03
Chromosome2 (Build37)
Map Location 141,017,934 - 141,149,570
singlet/doubletdoublet
Overlap genenone
Upstream gene2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030A03.bB6Ng01-030A03.g
ACCDH860039DH860040
length9191,075
definitionDH860039|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A03, 5' end.DH860040|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,017,934 - 141,018,860)(141,148,478 - 141,149,570)
sequence
gaattccctcatgaagcagctcagtcaaggtacttcagtgttcagcaagg
catctttcatgaagaatgccatcctaaaacactaacaacacttagcatct
atagtaagaaacctggaatccccgaaggccagagttatctcaccagttcc
aactgcaattagagcagtgggctagtccaccgacctattacatgaacaag
tctcacatctgtgagaagtttgcatattttggacttggatatggatattt
tctttggatatattcccaaatctttctgacaaaagccagttataaggcct
gggtttacctcaagttgtccaggaaggtgtgggtaggcctcacaagtttg
gttcttacaggagtgattatcattattttctatcagataatcatagataa
gtaagttaatatttagatgtgtgttacaattatgtttggccagttataat
gctgcaaatgcatactggacaggaaatgaaaagcaagacatgagaataga
catctcttgaaaactacaaatcttcaggctgggaaacagaaaaaaataga
ataaaaatgggtctagcttaccacatatattgatagcttatataaaacat
tcagtgcttgtaagatgtggttgactgctatgcacattttacatcatttc
atgtcacactgaccatattaaagaactatcgccatcatccacagaactga
tgaaacacaaaggtccaaagagcctaagaaactggtctaagatcatatag
ctcaaagtggcaaagccactgtgcagacccggtgcctccagctccatcat
cagcctcacatctccattattacctcagtgagaacactggcttaagagaa
gtatctgcattcatctcagaatctatggttttgatttttgtttgtttgtt
tgtttgttttgtttgtttg
gaattcttaacaaaattacatcatttacaaacacaccaaattattcccaa
tcaaaattccatgtgcatttcgattaaatctggcttcattcaacaacata
atgctagtgtaaatattttaatccttgtgggactctgtattaactgagta
gtacagaatcctgactacattttgagtgactagaatttctgctatttctg
gactttcccaactgatgaaacaaaagggggttttggaaggatgtctgaaa
agaggaagaggttgtctccttaaagaaatctcttcaatgtttacaagggt
atgtgggcttatttggccctgggtagtcaagagcattctataagcggatg
tccactcagagaagcagctgttctctgagcaccaatgaacatctttgaag
gactcatttgaacatagttgtgcaatagaattttatggcctaaataattt
tcactttatgttaatagttcatttgtcctgttctggtgagatgtaattcc
tcatacaagggatatatagataagaacatagttacatttaaaacacaata
acaatgagccctttacagtagatacctgctccaaaaaaaaaaaaaatcct
taggactcccacccctctcctgttttatttatatcctaccagtccctccc
ttcccctgccctctcctcctcccttcccctgccctctcctcatctctctt
tctctctctctctgtctctctcctttctgaaagggtcccagaatgtagcc
tcaactgaattcagattctctattaagcctatgctagtcttgatccacta
tcctcctatttcaacctccttggtgcagaaaccactgaaccatctgtttt
tctggttcagaaagtagttcttgtgtatatccagtatacctggacacagt
tttgctttggagaaacaaatagtaataatggtcagagatgtggctacata
ttcattctggactccacttcacccactgcagacaaagcatggagctgcag
tgttaagcgagacagagacctgatctccagcattgtatggagatttagaa
ctttggatataggctaaaatctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141017934_141018860
seq2: B6Ng01-030A03.b_45_962

seq1  GAATTCCCTCATGAAGCAGCTCAGTCAAGGTACTTCAGTGTTCAGCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCATGAAGCAGCTCAGTCAAGGTACTTCAGTGTTCAGCAAGG  50

seq1  CATCTTTCATGAAGAATGCCATCCTAAAACACTAACAACACTTAGCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCATGAAGAATGCCATCCTAAAACACTAACAACACTTAGCATCT  100

seq1  ATAGTAAGAAACCTGGAATCCCCGAAGGCCAGAGTTATCTCACCAGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAGAAACCTGGAATCCCCGAAGGCCAGAGTTATCTCACCAGTTCC  150

seq1  AACTGCAATTAGAGCAGTGGGCTAGTCCACCGACCTATTACATGAACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAATTAGAGCAGTGGGCTAGTCCACCGACCTATTACATGAACAAG  200

seq1  TCTCACATCTGTGAGAAGTTTGCATATTTTGGACTTGGATATGGATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATCTGTGAGAAGTTTGCATATTTTGGACTTGGATATGGATATTT  250

seq1  TCTTTGGATATATTCCCAAATCTTTCTGACAAAAGCCAGTTATAAGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGATATATTCCCAAATCTTTCTGACAAAAGCCAGTTATAAGGCCT  300

seq1  GGGTTTACCTCAAGTTGTCCAGGAAGGTGTGGGTAGGCCTCACAAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTACCTCAAGTTGTCCAGGAAGGTGTGGGTAGGCCTCACAAGTTTG  350

seq1  GTTCTTACAGGAGTGATTATCATTATTTTCTATCAGATAATCATAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTACAGGAGTGATTATCATTATTTTCTATCAGATAATCATAGATAA  400

seq1  GTAAGTTAATATTTAGATGTGTGTTACAATTATGTTTGGCCAGTTATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTAATATTTAGATGTGTGTTACAATTATGTTTGGCCAGTTATAAT  450

seq1  GCTGCAAATGCATACTGGACAGGAAATGAAAAGCAAGACATGAGAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAATGCATACTGGACAGGAAATGAAAAGCAAGACATGAGAATAGA  500

seq1  CATCTCTTGAAAACTACAAATCTTCAGGCTGGGAAACAGAAAAAAATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTGAAAACTACAAATCTTCAGGCTGGGAAACAGAAAAAAATAGA  550

seq1  ATAAAAATGGGTCTAGCTTACCACATATATTGATAGCTTATATAAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGGGTCTAGCTTACCACATATATTGATAGCTTATATAAAACAT  600

seq1  TCAGTGCTTGTAAGATGTGGTTGACTGCTATGCACATTTTACATCATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTTGTAAGATGTGGTTGACTGCTATGCACATTTTACATCATTTC  650

seq1  ATGTCACACTGACCATATTAAAGAACTATCGCCATCATCCACAGAACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACACTGACCATATTAAAGAACTATCGCCATCATCCACAGAACTGA  700

seq1  TGAAACACAAAGGTCCAAAGAGCCTAAGAAACTGGTCTAAGATCATATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACACAAAGGTCCAAAGAGCCTAAGAAACTGGTCTAAGATCATATAG  750

seq1  CTCAAAGTGGCAAAGCCACTGTGCAGACCCGGTGCCTCCAGCTCCATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTGGCAAAGCCACTGTGCAGACCCGGTGCCTCCAGCTCCATCAT  800

seq1  CAGCCTCACATCTCCATTATTACCTCAGTGAGAACACTGGCTTAAAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGCCTCACATCTCCATTATTACCTCAGTGAGAACACTGGCTT-AAGAGA  849

seq1  AGTATCTGCATTCATCTCAGGAATCTATGGTTTTTGATTTTTTGTTTTGT  900
      ||||||||||||||||||| |||||||||| |||||| |||||||||   
seq2  AGTATCTGCATTCATCTCA-GAATCTATGG-TTTTGA-TTTTTGTTT--G  894

seq1  TTTGTTTTGTTTTGTTTTGTTTTGTTT  927
      |||||||   ||||||||| |||||||
seq2  TTTGTTT--GTTTGTTTTG-TTTGTTT  918

seq1: chr2_141148478_141149570
seq2: B6Ng01-030A03.g_61_1135 (reverse)

seq1  CCCAGAATTTTGTAAGCCTAATATTCCAAAGTGCTAAATACTTCATTACA  50
      |||||| |||    ||||| ||| |||||||| |||||| || || ||| 
seq2  CCCAGATTTT----AGCCT-ATA-TCCAAAGTTCTAAAT-CTCCA-TAC-  41

seq1  AATGCCTGGAGATCAGAGTCTCCTGGTCTCGCTTTAAACACTTGCAGCTC  100
      |||| ||||||||||| |||||   |||||||||  ||||| ||||||||
seq2  AATG-CTGGAGATCAG-GTCTC--TGTCTCGCTT--AACAC-TGCAGCTC  84

seq1  CATGCTTTTGTCTGCAGTGGGTGAAGTGGAGTTCAGAATG-ATATGTAGC  149
      ||||| |||||||||||||||||||||||||| ||||||| |||||||||
seq2  CATGC-TTTGTCTGCAGTGGGTGAAGTGGAGTCCAGAATGAATATGTAGC  133

seq1  CACATCTCTGACCATTATTTACTATTTGTGTCTCCAAAGCAAAACTGTGT  199
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  CACATCTCTGACCATTA-TTACTATTTGTTTCTCCAAAGCAAAACTGTGT  182

seq1  CCAGGTATTACTGGATATACACAAGAACTACTTTCTGAACCAGAAAAACA  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTA-TACTGGATATACACAAGAACTACTTTCTGAACCAGAAAAACA  231

seq1  GATGGTTCAGTGGTTTCTGCACCAAGGAGGTTGAAATAGGAGGATAGTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTCAGTGGTTTCTGCACCAAGGAGGTTGAAATAGGAGGATAGTGG  281

seq1  ATCAAGACTAGCATAGGCTTAATAGAGAATCTGAATTCAGTTGAGGCTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACTAGCATAGGCTTAATAGAGAATCTGAATTCAGTTGAGGCTAC  331

seq1  ATTCTGGGACCCTTTCAGAAAGGAGAGAGACAGAGAGAGAGAGAAAGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGACCCTTTCAGAAAGGAGAGAGACAGAGAGAGAGAGAAAGAGA  381

seq1  GATGAGGAGAGGGCAGGGGAAGGGAGGAGGAGAGGGCAGGGGAAGGGAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGAGAGGGCAGGGGAAGGGAGGAGGAGAGGGCAGGGGAAGGGAGG  431

seq1  GACTGGTAGGATATAAATAAAACAGGAGAGGGGTGGGAGTCCTAAGGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTAGGATATAAATAAAACAGGAGAGGGGTGGGAGTCCTAAGGATT  481

seq1  TTTTTTTTTTTTGGAGCAGGTATCTACTGTAAAGGGCTCATTGTTATTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGGAGCAGGTATCTACTGTAAAGGGCTCATTGTTATTGT  531

seq1  GTTTTAAATGTAACTATGTTCTTATCTATATATCCCTTGTATGAGGAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATGTAACTATGTTCTTATCTATATATCCCTTGTATGAGGAATT  581

seq1  ACATCTCACCAGAACAGGACAAATGAACTATTAACATAAAGTGAAAATTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCACCAGAACAGGACAAATGAACTATTAACATAAAGTGAAAATTA  631

seq1  TTTAGGCCATAAAATTCTATTGCACAACTATGTTCAAATGAGTCCTTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCCATAAAATTCTATTGCACAACTATGTTCAAATGAGTCCTTCAA  681

seq1  AGATGTTCATTGGTGCTCAGAGAACAGCTGCTTCTCTGAGTGGACATCCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCATTGGTGCTCAGAGAACAGCTGCTTCTCTGAGTGGACATCCG  731

seq1  CTTATAGAATGCTCTTGACTACCCAGGGCCAAATAAGCCCACATACCCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGAATGCTCTTGACTACCCAGGGCCAAATAAGCCCACATACCCTT  781

seq1  GTAAACATTGAAGAGATTTCTTTAAGGAGACAACCTCTTCCTCTTTTCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATTGAAGAGATTTCTTTAAGGAGACAACCTCTTCCTCTTTTCAG  831

seq1  ACATCCTTCCAAAACCCCCTTTTGTTTCATCAGTTGGGAAAGTCCAGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTTCCAAAACCCCCTTTTGTTTCATCAGTTGGGAAAGTCCAGAAA  881

seq1  TAGCAGAAATTCTAGTCACTCAAAATGTAGTCAGGATTCTGTACTACTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAATTCTAGTCACTCAAAATGTAGTCAGGATTCTGTACTACTCA  931

seq1  GTTAATACAGAGTCCCACAAGGATTAAAATATTTACACTAGCATTATGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATACAGAGTCCCACAAGGATTAAAATATTTACACTAGCATTATGTT  981

seq1  GTTGAATGAAGCCAGATTTAATCGAAATGCACATGGAATTTTGATTGGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATGAAGCCAGATTTAATCGAAATGCACATGGAATTTTGATTGGGA  1031

seq1  ATAATTTGGTGTGTTTGTAAATGATGTAATTTTGTTAAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGGTGTGTTTGTAAATGATGTAATTTTGTTAAGAATTC  1075