BAC Information

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BAC

Clone NameB6Ng01-030C09
Chromosome2 (Build37)12 (Build37)
Map Location 14,219,676 - 14,220,63149,734,669 - 49,735,798
singlet/doubletsingletsinglet
Overlap geneMrc1
Upstream geneCubn, Trdmt1, Vim, St8sia6, Ptpla, Stam, 2010003H20Rik
Downstream geneSlc39a12, Cacnb2, LOC100041164, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030C09.bB6Ng01-030C09.g
ACCDH860140DH860141
length8901,114
definitionDH860140|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C09, 5' end.DH860141|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,219,676 - 14,220,631)(49,734,669 - 49,735,798)
sequence
gaattctgcactaaactcatctgatcctgggctttttttggttgggagac
tattaataactgcttctatttctttaggagatatgggactgtatagatca
ttaacctgatctttatttaaatttgttacctggtatctgtctagaaactt
gtccatttcattcaggttctccagtgttgttgagtatagccttttgtaga
aggatctgatggagttttggatttcttcaggatctgtcattatgtctccc
ttttcattcctaattttgttaattagtatgctttccctgtgccctctagt
gagtctggctaagggtttatctatcgtgctggtgttctcaaagaaccagc
tcctttggttgattctttgaatagttcttcttgtttccatttggttgatt
tcgcccctgagtttgattatttcctgccatctactcctcttgggtgaatt
tgcttccttttgttctagagcatttaggtttgttgtcaacctaaacaact
ctctagtttctttctggaggcactcagagctatgagttttccacttacaa
atgctttcattgtgtcccgtaagtttgggtatgttatgccttcattttca
ttaaattccaaaaaggccttaattttttctttattccttccttgaccaag
gtatcattgagaagagtgttgttcagtttccacgtgaatgttggcttttt
attatttattttgttattgaagatcagccttagttccacggtgatctgat
aggatgcataggacaatttcaatactttttgtatatgttttgtcttgttt
tgtgactaattatgtagtaattctggagaagataccatgaggtgctgaga
agttatatccttttcttttaggataaaatgtctgtaaata
gaattcagttattacccaggcttgagacccgttttatactctaagcacag
aactaacagctcctgggagctggtatttttggatgttgcttcaactacct
ttgtggttgagggatagctaggagctatagagtaaaaaatgtcaacggga
acaagaggagagatgggaagaggaggacagtttcaaggagaatgctaagg
gccaaatgattgcaaatatatgggacaggagaatttaaaacatgaaaaag
gtactttttaagcaagtcaaataatggtgtgagtttcatgtctcttgtta
acttaactgtaaaaatgatacccttagagtcaatgtgcagcgagctccag
ggtttactccacaatgcctgcggcctctattatcaatgatttaggagagg
aagaagttgaaggaaagatgtcatgggtagcccctcagagttctgagtat
aattgtaatccacattccatagcctcctactaaattaaaacaaaacaaaa
caaaacaaaaccttatatttctccattgtttgtcagacagtatttgttca
gcttttctttagccgagaatcactgcttctaaaatatttagaagtaaccg
ttcggcagaggatgcaattctgagatatattacttttcaaagcctgaaat
tatcaccacttattgctctaacgcagacatcacggctatgaatcttatct
tcaggaattagtggacagatttagaacactgtgagttaaaattttcaggc
tgtgcaggagaatcaagaagcctctgaattttgcttaacctttttcttca
ggtaccagtatggatttagtaaatttcctatcatctgtcttttaaagtcc
ttggggagcatctatgaatatcttagtcacggtctgtgaatcccgctttt
ggagatacagcagatgcattatctcaataggattgattaacagagctcag
atgtcactgatgagtatttgcatacccaggcttatttcatggcatgctat
tgacttacctccagcaaacatctgggctgattgcatgtttcagcacggtg
aaatttttagcatgttcttatacacccggcctttcaaccactgtgaaaat
ataagcagcactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_14219676_14220631
seq2: B6Ng01-030C09.b_404_930 (reverse)

seq1  TATTTACAGGAGACACATCTCAGAGAAAGAGATAGACACTACCTCAGAAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAGGCTGGAAAAAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAGACAAGGAGGGGCACTTTGTTCTCATCAAAGGTAAAATCCTCCAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGAACTCTCAATTCTGAATATCTATGCGCCAAATACAAGGGCAGCCAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACCTCACA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCA  350
                                                        
seq2  --------------------------------------------------  0

seq1  CGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAA  400
                                                        
seq2  --------------------------------------------------  0

seq1  ACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAG  450
                        ||| ||||| |||||||||||||||| |||||
seq2  ------------------TATTTACAG-ACATTTTATCCTAAAAGAAAAG  31

seq1  GATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCAC  500
      ||||||    |||||||||||||||||||| |||||||| |||| || ||
seq2  GATATA---ACTTCTCAGCACCTCATGGTATCTTCTCCAGAATT-ACTAC  77

seq1  ATAATAGGTCACAAAACAGGCCTCAACAGATTCAAAAA-TATTGAAATTG  549
      |||||  ||||||||||| | |  |||| || |||||| |||||||||||
seq2  ATAATTAGTCACAAAACAAGACAAAACATATACAAAAAGTATTGAAATTG  127

seq1  TCCCATGTATCCTATCAGATCACCAT-GCACTAAGGCTGATCTTCAATAA  598
      ||| ||| |||||||||||||||| | | |||||||||||||||||||||
seq2  TCCTATGCATCCTATCAGATCACCGTGGAACTAAGGCTGATCTTCAATAA  177

seq1  CAAAAAAAAGAACAGAAAGCCAACACTCACATGGAAACTGAACAACACTC  648
      ||||| ||| || | |||||||||| |||| |||||||||||||||||||
seq2  CAAAATAAATAATAAAAAGCCAACATTCACGTGGAAACTGAACAACACTC  227

seq1  TTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGAC  698
      |||||||||||||||||||||||||||||||||||||| ||||||| | |
seq2  TTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAA-AAATTAAGGCC  276

seq1  TTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGA  748
      ||||| || |||||||||||||||| || ||| ||||||||| |  ||||
seq2  TTTTTGGAATTTAATGAAAATGAAGGCATAACATACCCAAACTTACGGGA  326

seq1  CACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA  798
      |||||||||||||||| |||| || |||||||||||||||||||||||||
seq2  CACAATGAAAGCATTTGTAAGTGGAAAACTCATAGCTCTGAGTGCCTCCA  376

seq1  TGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAA  848
        |||||||  |||||      |  |   || ||||||||| | ||||| 
seq2  GAAAGAAACTAGAGAG------TTGT-TTAGGTTGACAACAAACCTAAAT  419

seq1  GCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGA  898
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  GCTCTAGAACAAAAGGAAGCAAATTCACCCAAGAGGAGTAGATGGCAGGA  469

seq1  AATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTA  948
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  AATAATCAAACTCAGGGGCGAAATCAACCAAATGGAAACAAGAAGAACTA  519

seq1  TTCAAAGA  956
      ||||||||
seq2  TTCAAAGA  527

seq1: chr12_49734669_49735798
seq2: B6Ng01-030C09.g_67_1180 (reverse)

seq1  AGAGTGCTGCTTTTATATTTCCTACA-TGCTGTGAAAGGCACGGGTGTTA  49
      ||||||||||  |||||||| | ||| || | |||||||| |||||||  
seq2  AGAGTGCTGC--TTATATTTTC-ACAGTGGT-TGAAAGGC-CGGGTGTAT  45

seq1  CAGAAACTGCTATAAAATTCACCGTGGCTGAAACATGCAAATCAGCCCAG  99
       ||||  ||||| ||| |||||||| |||||||||||| |||||||||||
seq2  AAGAACATGCTAAAAATTTCACCGT-GCTGAAACATGC-AATCAGCCCAG  93

seq1  AATGTTTGCTGGAGGGTAAGTC-ATAGCAATGCCATTGAAAT-AGCCTGG  147
       |||||||||||| |||||||| ||||| |||||| |||||| |||||||
seq2  -ATGTTTGCTGGA-GGTAAGTCAATAGC-ATGCCA-TGAAATAAGCCTGG  139

seq1  GTATGCATAT-CTCATCAGTGACATCTTGAGCTCTGTTAATCAATTCCTA  196
      ||||||| || ||||||||||||||| ||||||||||||||||| |||||
seq2  GTATGCAAATACTCATCAGTGACATC-TGAGCTCTGTTAATCAA-TCCTA  187

seq1  TTTGAGATAAATGCATCTGCTTGTATCTCCAAAAGCGGGATTCACAGAAC  246
       ||||||| ||||||||||| |||||||||||||||||||||||||| ||
seq2  -TTGAGAT-AATGCATCTGC-TGTATCTCCAAAAGCGGGATTCACAG-AC  233

seq1  CGTGACTAAGATATTTCATAGATGCTCCCCAAGGACTTTAAAAGACAGAA  296
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  CGTGACTAAGATA-TTCATAGATGCTCCCCAAGGACTTTAAAAGACAG-A  281

seq1  TGATAGGAAATTTACTAAATCCATACTGGTAACCTGAAGAAAAAGGTTAA  346
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGATAGGAAATTTACTAAATCCATACTGGT-ACCTGAAGAAAAAGGTTAA  330

seq1  GCAAAATTCAGAGGCTTCTTGATTCTCCTGCACAGCCTGAAAATTTTAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTCAGAGGCTTCTTGATTCTCCTGCACAGCCTGAAAATTTTAAC  380

seq1  TCACAGTGTTCTAAATCTGTCCACTAATTCCTGAAGATAAGATTCATAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGTTCTAAATCTGTCCACTAATTCCTGAAGATAAGATTCATAGC  430

seq1  CGTGATGTCTGCGTTAGAGCAATAAGTGGTGATAATTTCAGGCTTTGAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATGTCTGCGTTAGAGCAATAAGTGGTGATAATTTCAGGCTTTGAAA  480

seq1  AGTAATATATCTCAGAATTGCATCCTCTGCCGAACGGTTACTTCTAAATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATATCTCAGAATTGCATCCTCTGCCGAACGGTTACTTCTAAATA  530

seq1  TTTTAGAAGCAGTGATTCTCGGCTAAAGAAAAGCTGAACAAATACTGTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAGCAGTGATTCTCGGCTAAAGAAAAGCTGAACAAATACTGTCT  580

seq1  GACAAACAATGGAGAAATATAAGGTTTTGTTTTGTTTTGTTTTGTTTTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAATGGAGAAATATAAGGTTTTGTTTTGTTTTGTTTTGTTTTAA  630

seq1  TTTAGTAGGAGGCTATGGAATGTGGATTACAATTATACTCAGAACTCTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAGGAGGCTATGGAATGTGGATTACAATTATACTCAGAACTCTGA  680

seq1  GGGGCTACCCATGACATCTTTCCTTCAACTTCTTCCTCTCCTAAATCATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTACCCATGACATCTTTCCTTCAACTTCTTCCTCTCCTAAATCATT  730

seq1  GATAATAGAGGCCGCAGGCATTGTGGAGTAAACCCTGGAGCTCGCTGCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAGAGGCCGCAGGCATTGTGGAGTAAACCCTGGAGCTCGCTGCAC  780

seq1  ATTGACTCTAAGGGTATCATTTTTACAGTTAAGTTAACAAGAGACATGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTCTAAGGGTATCATTTTTACAGTTAAGTTAACAAGAGACATGAA  830

seq1  ACTCACACCATTATTTGACTTGCTTAAAAAGTACCTTTTTCATGTTTTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACCATTATTTGACTTGCTTAAAAAGTACCTTTTTCATGTTTTAA  880

seq1  ATTCTCCTGTCCCATATATTTGCAATCATTTGGCCCTTAGCATTCTCCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTGTCCCATATATTTGCAATCATTTGGCCCTTAGCATTCTCCTT  930

seq1  GAAACTGTCCTCCTCTTCCCATCTCTCCTCTTGTTCCCGTTGACATTTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTCCTCCTCTTCCCATCTCTCCTCTTGTTCCCGTTGACATTTTT  980

seq1  TACTCTATAGCTCCTAGCTATCCCTCAACCACAAAGGTAGTTGAAGCAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTATAGCTCCTAGCTATCCCTCAACCACAAAGGTAGTTGAAGCAAC  1030

seq1  ATCCAAAAATACCAGCTCCCAGGAGCTGTTAGTTCTGTGCTTAGAGTATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAAATACCAGCTCCCAGGAGCTGTTAGTTCTGTGCTTAGAGTATA  1080

seq1  AAACGGGTCTCAAGCCTGGGTAATAACTGAATTC  1130
      ||||||||||||||||||||||||||||||||||
seq2  AAACGGGTCTCAAGCCTGGGTAATAACTGAATTC  1114