BAC Information

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BAC

Clone NameB6Ng01-030F21
Chromosome2 (Build37)
Map Location 94,857,431 - 95,041,022
singlet/doubletdoublet
Overlap genenone
Upstream geneHsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030F21.bB6Ng01-030F21.g
ACCDH860300DH860301
length598985
definitionDH860300|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F21, 5' end.DH860301|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,857,431 - 94,858,027)(95,040,020 - 95,041,022)
sequence
gaattcagaggctgctgcacatctgtagctatagtgattttaggcatatc
tgaatttaggccatcaaagaatggctctaggctgtttgcatcatatgtat
tgatctcttatccttattttatttatttttttcatttcatttttattaga
tattttcttcatttaaatttcaaatgctatcctgaaagtcccctataccc
tccctcaactctgctccccaacccacccactcctgcttcctggccctggc
atttccctgtactggggcatatgatcttcataaggccaagggcttctcct
cccattgatggccaactaggccatcctctgctacatatgcaactagagac
acagttcggggggggggggcggtacttgttggttcattctcctatagggt
tgccgacccccttagctccttgggtattttctctagctcctattttaggg
gtcctgtgttccatccaatagatgactgtgaacatccacttctgtatttg
ccaggcactggcatagcctcacaagagggtcctatcagcaaaaatcttgc
tggcatatgcaatagtgttgggtttaatggttatatatgggatggatc
gaattcaatcacataggaatgtacacatgatgcacagcacactgacaacc
tctgggtgcctccttctgccgataggattttagtcaacaccatagacatc
acttctgtggcttcattttctggccagtttagagaaggctattgagggta
aaccagggagtcacttggttaaaggaagttgcagtttgaattctgttctt
ccatttaactgcaccaattttccagcttagtgaaaaatttaaaaattaat
actacaccctctgttacatttacatttgttctatatgttgcttcttgttt
aaaatggtaattgcatatcctgtatagatttgcaaaacaatcttgcatat
gagtgatgaatctgacattaagaacctgcagaacagggtccattctggca
ctttatgaaagagtacaacaaagatgtctcaaaaatgacccagtaggcac
aataaatttattgagatggtaaggactgtcaacaggattcttttattaca
atgcaattgcaaaatcaatctaattgtctaaaagcaggggatcaattaaa
cgaagtatgttgtaatcttaaaatgaagctccacatagccacaacaataa
aataataaaatggtagttggtggtttgggaatgtccctgcattggaaaga
tgcagaatatggtgcccatgagtgtggttgtgctctagataatagtgtgg
acaggccagaaatatcctcaccacttctgcggtgtggagaggatgtataa
gtttccttcagatttcactgaaaactcagtttcaccaagcatcaaaacta
aagttttcatcctcaacttttgctgagtgtccctctatatcttcataact
ttgcacacactaatatatctggcaggttctgacagaaaagatgaagcaca
gagtcccgtgactgaaagagtttctagaaggatcagaccactctaaggtg
tgggcagattgaaggatccacacaatctgtttaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_94857431_94858027
seq2: B6Ng01-030F21.b_47_644

seq1  GAATTCAGAGGCTGCTGCACATCTGTAGCTATAGTGATTTTAGGCATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCTGCTGCACATCTGTAGCTATAGTGATTTTAGGCATATC  50

seq1  TGAATTTAGGCCATCAAAGAATGGCTCTAGGCTGTTTGCATCATATGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTAGGCCATCAAAGAATGGCTCTAGGCTGTTTGCATCATATGTAT  100

seq1  TGATCTCTTATCCTTATTTTATTTATTTTTTTCATTTCATTTTTATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTTATCCTTATTTTATTTATTTTTTTCATTTCATTTTTATTAGA  150

seq1  TATTTTCTTCATTTAAATTTCAAATGCTATCCTGAAAGTCCCCTATACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTCATTTAAATTTCAAATGCTATCCTGAAAGTCCCCTATACCC  200

seq1  TCCCTCAACTCTGCTCCCCAACCCACCCACTCCTGCTTCCTGGCCCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAACTCTGCTCCCCAACCCACCCACTCCTGCTTCCTGGCCCTGGC  250

seq1  ATTTCCCTGTACTGGGGCATATGATCTTCATAAGGCCAAGGGCTTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTGTACTGGGGCATATGATCTTCATAAGGCCAAGGGCTTCTCCT  300

seq1  CCCATTGATGGCCAACTAGGCCATCCTCTGCTACATATGCAACTAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGATGGCCAACTAGGCCATCCTCTGCTACATATGCAACTAGAGAC  350

seq1  ACAGTTCGGGGGGGGGGGGCGGTACTTGTTGGTTCATTCTCCTATAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCGGGGGGGGGGGGCGGTACTTGTTGGTTCATTCTCCTATAGGGT  400

seq1  TGCCGACCCCCTTAGCTCCTTGGGTATTTTCTCTAGCTCCTATTTTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGACCCCCTTAGCTCCTTGGGTATTTTCTCTAGCTCCTATTTTAGGG  450

seq1  GTCCTGTGTTCCATCCAATAGATGACTGTGAACATCCACTTCTGTATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGTTCCATCCAATAGATGACTGTGAACATCCACTTCTGTATTTG  500

seq1  CCAGGCACTGGCATAGCCTCACAAGAGGGTCCTATCAGC-AAAATCTTGC  549
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCAGGCACTGGCATAGCCTCACAAGAGGGTCCTATCAGCAAAAATCTTGC  550

seq1  TGGCATATGCAATAGTGTTGGGTTTAATGGTTATATATGGGATGGATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATGCAATAGTGTTGGGTTTAATGGTTATATATGGGATGGATC  598

seq1: chr2_95040020_95041022
seq2: B6Ng01-030F21.g_66_1050 (reverse)

seq1  GTTATACAGATTGTTGCTGGTATCCTTCAATCTGCCCACACTCTTATGAG  50
      |||| |||||||||   ||| |||||||||||||||||||| |||| |||
seq2  GTTAAACAGATTGT--GTGG-ATCCTTCAATCTGCCCACAC-CTTA-GAG  45

seq1  TGGTCCTGATCCTTCTAGAAAACTCTTTTCAGTCACGGGACTCTGTGCTT  100
      |||| ||||||||||||| |||||| ||||||||||||||||||||||||
seq2  TGGT-CTGATCCTTCTAG-AAACTC-TTTCAGTCACGGGACTCTGTGCTT  92

seq1  CATCTGTTTCTGTCCAGAACCTTGCCAGATATATTTAGTGTGGTGCAAAG  150
      ||||| ||||||| ||||||| ||||||||||| ||||||| ||||||||
seq2  CATCT-TTTCTGT-CAGAACC-TGCCAGATATA-TTAGTGT-GTGCAAAG  137

seq1  TTATTGAAGATATAGAGGGGACACTCAGCAAAAGTTTGAGGATGAAAACT  200
      ||| |||||||||||| ||||||||||||||||| |||||||||||||| 
seq2  TTA-TGAAGATATAGA-GGGACACTCAGCAAAAG-TTGAGGATGAAAAC-  183

seq1  TTTAGTTTTGATGCTTGGTGAAACTGAGTTTTCAGTGAAATCTGAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTTGATGCTTGGTGAAACTGAGTTTTCAGTGAAATCTGAAGGAA  233

seq1  ACTTATACATCCTCTCCACACCTGCAGAAGTGGTGAGGATATTTCTGGCC  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTTATACATCCTCTCCACACC-GCAGAAGTGGTGAGGATATTTCTGGCC  282

seq1  TGTCCACACTATTATCTAGAGCACAACCACACTCATGGGCACCATATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACACTATTATCTAGAGCACAACCACACTCATGGGCACCATATTCT  332

seq1  GCATCTTTCCAATGCAGGGACATTCCCAAACCACCAACTACCATTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTCCAATGCAGGGACATTCCCAAACCACCAACTACCATTTTATT  382

seq1  ATTTTATTGTTGTGGCTATGTGGAGCTTCATTTTAAGATTACAACATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGTTGTGGCTATGTGGAGCTTCATTTTAAGATTACAACATACT  432

seq1  TCGTTTAATTGATCCCCTGCTTTTAGACAATTAGATTGATTTTGCAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTAATTGATCCCCTGCTTTTAGACAATTAGATTGATTTTGCAATTG  482

seq1  CATTGTAATAAAAGAATCCTGTTGACAGTCCTTACCATCTCAATAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAATAAAAGAATCCTGTTGACAGTCCTTACCATCTCAATAAATTT  532

seq1  ATTGTGCCTACTGGGTCATTTTTGAGACATCTTTGTTGTACTCTTTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCCTACTGGGTCATTTTTGAGACATCTTTGTTGTACTCTTTCATA  582

seq1  AAGTGCCAGAATGGACCCTGTTCTGCAGGTTCTTAATGTCAGATTCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAGAATGGACCCTGTTCTGCAGGTTCTTAATGTCAGATTCATCA  632

seq1  CTCATATGCAAGATTGTTTTGCAAATCTATACAGGATATGCAATTACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATGCAAGATTGTTTTGCAAATCTATACAGGATATGCAATTACCAT  682

seq1  TTTAAACAAGAAGCAACATATAGAACAAATGTAAATGTAACAGAGGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAGAAGCAACATATAGAACAAATGTAAATGTAACAGAGGGTGT  732

seq1  AGTATTAATTTTTAAATTTTTCACTAAGCTGGAAAATTGGTGCAGTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAATTTTTAAATTTTTCACTAAGCTGGAAAATTGGTGCAGTTAAA  782

seq1  TGGAAGAACAGAATTCAAACTGCAACTTCCTTTAACCAAGTGACTCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAACAGAATTCAAACTGCAACTTCCTTTAACCAAGTGACTCCCTG  832

seq1  GTTTACCCTCAATAGCCTTCTCTAAACTGGCCAGAAAATGAAGCCACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCCTCAATAGCCTTCTCTAAACTGGCCAGAAAATGAAGCCACAGA  882

seq1  AGTGATGTCTATGGTGTTGACTAAAATCCTATCGGCAGAAGGAGGCACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTCTATGGTGTTGACTAAAATCCTATCGGCAGAAGGAGGCACCC  932

seq1  AGAGGTTGTCAGTGTGCTGTGCATCATGTGTACATTCCTATGTGATTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTGTCAGTGTGCTGTGCATCATGTGTACATTCCTATGTGATTGAA  982

seq1  TTC  1003
      |||
seq2  TTC  985