BAC Information

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BAC

Clone NameB6Ng01-030G01
Chromosome2 (Build37)
Map Location 57,458,683 - 57,459,666
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
Downstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030G01.bB6Ng01-030G01.g
ACCDH860308DH860309
length842975
definitionDH860308|Mus musculus domesticus DNA, BAC clone: B6Ng01-030G01, 5' end.DH860309|Mus musculus domesticus DNA, BAC clone: B6Ng01-030G01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgatggagtttttggggtcacttaagtattctatcatatcat
cttcaagtagtgatatttttactttaatttccaatttgtatccttttgac
ctccttttgttgtctaattgctctagctagaacttcaagtactatattga
atagaaagggagagagagggcagccttgtccctgattttagtgggattgc
ttcaagtttctctccatttagtttgatgttggctactgttttgctatata
ttgcttttactatgtttaggtatgggccttgaattcctaatattttccag
actttatcatgaaggggtgttagatttttgtcaaatgctttctcagcatc
taataagatgatcatgtggtgtttttctttgagtttgtttatatagtgga
ttacgttgatggatttccatacattgaaccatccctgcatccctagaatg
aagtctatttgatcatgatggatgattgttttgatgtgttcttggattcg
gtttgcgagaattttattgagtatttttgcatcaatattcataagagaac
ttggtctgaagttcttttctttgttgggtctttgtgaggtttaggtatca
gtgtaactgtggcttcatagaacaaattgggtagagtaccttctgtttct
attttgtggaatactttgaagagtattggtattgggtcttctttgaaggt
ctaatagaattctgcactaaaccgatctagtcctggactttcttggttgg
gagactattaatgactactcctgcttctttgggtatatgggactgttaga
tggttttcctgaccctgacttaaattggtatctgtcttagaa
gaattcaaggaattttctgattttcacaacattttttaaaagttctcttt
atttacttggttgtcaaatcatagaattttagagtccatggggaaatcat
gtaatttcacaataaccatgtccgtaaccatgtatgagaaacatatactt
gcataaagctccctgaattattaatcgagtggttcagcgcccaggacatt
aactggaacacttgttgtttgcagattagtgtgtcttaaagttctgattc
ctgcagtagcctctttcttcttcctgccatgaattctcataccctactcc
ccacttgactgtacaaaaggagggccttttgtatagtcaagtaggcaagt
tcaggcaggtctgaaagcagagccactggctcacaccttttgccagcaga
gaactcctatactttgagtcaggattgaagagaagtaaaaatctattctc
agctcaccaggcatcacctgggaagtggatggcgatgcagaatatttgaa
cttgctcctcatgaactaagtgtctacatttaaaaaggctcagttggcat
cacactcttgtccatcctagcttgctttctatttttgtgataaacaccat
caccaaaaattacttgggaaggaaagggttcatttggattaaagatcaca
gtccgtgactgagggaagtcaagggagggacctagaagagagaattgaag
cagagactattttggagtgttgctgactccctggttctccatggtttcct
catcttgaccttctatagaatccaggaccagcatcaagagctgcactacc
cacagtggactagaccttccaaattagtcaacaatcaagaaattgtagac
cagggtagtggtgtatgcctttatttcagctcttgtaatagagagaggtg
aatctctgtactttgatatagccctgtctatatacttgagttacagacca
gataaaatctcataaaaactggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_57458683_57459666
seq2: B6Ng01-030G01.g_68_1042 (reverse)

seq1  ATTCCAGTATTTTATGAGATTTTTATCTGGTCTGTAACTCAGGTATATAG  50
      |||||||| |||||||||| ||||||||||||||||||||| ||||||||
seq2  ATTCCAGT-TTTTATGAGA-TTTTATCTGGTCTGTAACTCAAGTATATAG  48

seq1  ACAGGGCTATAATCAAAGTTACAGAGATTCACCTCTCTCTATTTACCAAG  100
      |||||||||| ||||||| ||||||||||||||||||||||||   ||||
seq2  ACAGGGCTAT-ATCAAAG-TACAGAGATTCACCTCTCTCTATT--ACAAG  94

seq1  AGCTGAAATTAAAGGCATACACCACTTACCCTGGTCTACAATTTCTTGAT  150
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  AGCTGAAA-TAAAGGCATACACCAC-TACCCTGGTCTACAATTTCTTGAT  142

seq1  TGTTGACTAATTTGGGAAGGTCTAGTCCACTGTGGGTAGTGCAGCTCTTG  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTAATTT-GGAAGGTCTAGTCCACTGTGGGTAGTGCAGCTCTTG  191

seq1  ATGCTGGTCCTGGATTCTATAGAAGGTCAAGATGAGGAAACCATGGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGTCCTGGATTCTATAGAAGGTCAAGATGAGGAAACCATGGAGAA  241

seq1  CCAGGGAGTCAGCAACACTCCAAAATAGTCTCTGCTTCAATTCTCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGTCAGCAACACTCCAAAATAGTCTCTGCTTCAATTCTCTCTTC  291

seq1  TAGGTCCCTCCCTTGACTTCCCTCAGTCACGGACTGTGATCTTTAATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCCTCCCTTGACTTCCCTCAGTCACGGACTGTGATCTTTAATCCA  341

seq1  AATGAACCCTTTCCTTCCCAAGTAATTTTTGGTGATGGTGTTTATCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCCTTTCCTTCCCAAGTAATTTTTGGTGATGGTGTTTATCACAA  391

seq1  AAATAGAAAGCAAGCTAGGATGGACAAGAGTGTGATGCCAACTGAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAGCAAGCTAGGATGGACAAGAGTGTGATGCCAACTGAGCCTT  441

seq1  TTTAAATGTAGACACTTAGTTCATGAGGAGCAAGTTCAAATATTCTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTAGACACTTAGTTCATGAGGAGCAAGTTCAAATATTCTGCAT  491

seq1  CGCCATCCACTTCCCAGGTGATGCCTGGTGAGCTGAGAATAGATTTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATCCACTTCCCAGGTGATGCCTGGTGAGCTGAGAATAGATTTTTAC  541

seq1  TTCTCTTCAATCCTGACTCAAAGTATAGGAGTTCTCTGCTGGCAAAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCAATCCTGACTCAAAGTATAGGAGTTCTCTGCTGGCAAAAGGT  591

seq1  GTGAGCCAGTGGCTCTGCTTTCAGACCTGCCTGAACTTGCCTACTTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCAGTGGCTCTGCTTTCAGACCTGCCTGAACTTGCCTACTTGACT  641

seq1  ATACAAAAGGCCCTCCTTTTGTACAGTCAAGTGGGGAGTAGGGTATGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAGGCCCTCCTTTTGTACAGTCAAGTGGGGAGTAGGGTATGAGA  691

seq1  ATTCATGGCAGGAAGAAGAAAGAGGCTACTGCAGGAATCAGAACTTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGGCAGGAAGAAGAAAGAGGCTACTGCAGGAATCAGAACTTTAAG  741

seq1  ACACACTAATCTGCAAACAACAAGTGTTCCAGTTAATGTCCTGGGCGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTAATCTGCAAACAACAAGTGTTCCAGTTAATGTCCTGGGCGCTG  791

seq1  AACCACTCGATTAATAATTCAGGGAGCTTTATGCAAGTATATGTTTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTCGATTAATAATTCAGGGAGCTTTATGCAAGTATATGTTTCTCA  841

seq1  TACATGGTTACGGACATGGTTATTGTGAAATTACATGATTTCCCCATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTTACGGACATGGTTATTGTGAAATTACATGATTTCCCCATGGA  891

seq1  CTCTAAAATTCTATGATTTGACAACCAAGTAAATAAAGAGAACTTTTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAATTCTATGATTTGACAACCAAGTAAATAAAGAGAACTTTTAAA  941

seq1  AAATGTTGTGAAAATCAGAAAATTCCTTGAATTC  984
      ||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTGAAAATCAGAAAATTCCTTGAATTC  975