BAC Information

Click to search

BAC

Clone NameB6Ng01-030G09
Chromosome2 (Build37)
Map Location 145,234,730 - 145,235,750
singlet/doubletsinglet
Overlap geneSlc24a3
Upstream geneLOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneLOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030G09.b
ACCDH860322
length1,010
definitionDH860322|Mus musculus domesticus DNA, BAC clone: B6Ng01-030G09, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacaatgcacaatgacaatcctgtttaatttaggaaccctagaa
tctggatagcagcattatacatgttcattctcgtagctgttcattatgtg
gttgaacttataaaagattttatgatctgaagaggccatcatttattaca
tcaggatatcatgatggaaacttacaaaaaaaaatatgagtgagaaacca
cctttacctgtgatgagttgcctaaacagaaaacagaaagcaggtttttt
aagcaacactcaagatagggtagtatgttgctatttgggggaattaggtg
cacaaagtatgtagaataagatagtaaaaataatttgctgagaaattact
acctcctaaacactgagttcacttatagtcttaatgcttagttttgttca
acatagtggagtttatgaggctgcagttacagactttagtagtaaatcaa
gtcattggtggcccaaatgatactcaactggtgagcagtaaggctggaga
ggaatctagaaagcctgactatagacctaactaaaatccatagatgagat
gtctgacatagagacaaaaggataagccatgaagcattcaggaacaagaa
aattcagaatggtgtttatttttcagttgggttccagaagaaatagtgat
tcccggccatcctcagaaaatacacagaataagtggctggtttctctgag
gcaggaaagaatagagtgcatctgacttaagatgtaggagttaggtattg
gtgaatagcatccaaggaaactccctggggatgctgggaaagtgaggctt
accttgtaccttgatagctctgatatttcctcagattctgcctttatgga
atctcagagattcaggaaaattttagacagaattagagaatgcttcaagg
agtagtggccttgctatccaggtttttgcactctgccctgcattcaatcc
agggctttctattcattgtcataactagctaagcagaagaaagtgttaag
ccataatcta
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145234730_145235750
seq2: B6Ng01-030G09.b_43_1052

seq1  GAATTCCACAATGCACAATGACAATCCTGTTTAATTTAGGAACCCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAATGCACAATGACAATCCTGTTTAATTTAGGAACCCTAGAA  50

seq1  TCTGGATAGCAGCATTATACATGTTCATTCTCGTAGCTGTTCATTATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATAGCAGCATTATACATGTTCATTCTCGTAGCTGTTCATTATGTG  100

seq1  GTTGAACTTATAAAAGATTTTATGATCTGAAGAGGCCATCATTTATTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACTTATAAAAGATTTTATGATCTGAAGAGGCCATCATTTATTACA  150

seq1  TCAGGATATCATGATGGAAACTTACAAAAAAAAATATGAGTGAGAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATATCATGATGGAAACTTACAAAAAAAAATATGAGTGAGAAACCA  200

seq1  CCTTTACCTGTGATGAGTTGCCTAAACAGAAAACAGAAAGCAGGTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCTGTGATGAGTTGCCTAAACAGAAAACAGAAAGCAGGTTTTTT  250

seq1  AAGCAACACTCAAGATAGGGTAGTATGTTGCTATTTGGGGGAATTAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACACTCAAGATAGGGTAGTATGTTGCTATTTGGGGGAATTAGGTG  300

seq1  CACAAAGTATGTAGAATAAGATAGTAAAAATAATTTGCTGAGAAATTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTATGTAGAATAAGATAGTAAAAATAATTTGCTGAGAAATTACT  350

seq1  ACCTCCTAAACACTGAGTTCACTTATAGTCTTAATGCTTAGTTTTGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTAAACACTGAGTTCACTTATAGTCTTAATGCTTAGTTTTGTTCA  400

seq1  ACATAGTGGAGTTTATGAGGCTGCAGTTACAGACTTTAGTAGTAAATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGGAGTTTATGAGGCTGCAGTTACAGACTTTAGTAGTAAATCAA  450

seq1  GTCATTGGTGGCCCAAATGATACTCAACTGGTGAGCAGTAAGGCTGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGGTGGCCCAAATGATACTCAACTGGTGAGCAGTAAGGCTGGAGA  500

seq1  GGAATCTAGAAAGCCTGACTATAGACCTAACTAAAATCCATAGATGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTAGAAAGCCTGACTATAGACCTAACTAAAATCCATAGATGAGAT  550

seq1  GTCTGACATAGAGACAAAAGGATAAGCCATGAAGCATTCAGGAACAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACATAGAGACAAAAGGATAAGCCATGAAGCATTCAGGAACAAGAA  600

seq1  AATTCAGAATGGTGTTTATTTTTCAGTTGGGTTCCAGAAGAAATAGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAATGGTGTTTATTTTTCAGTTGGGTTCCAGAAGAAATAGTGAT  650

seq1  TCCCGGCCATCCTCAGAAAATACACAGAATAAGTGGCTGGTTTCTCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGCCATCCTCAGAAAATACACAGAATAAGTGGCTGGTTTCTCTGAG  700

seq1  GCAGGAAAGAATAGAGTGCATCTGACTTAAGATGTAGGAGTTAGGTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAAGAATAGAGTGCATCTGACTTAAGATGTAGGAGTTAGGTATTG  750

seq1  GTGAAATAGCATCCAAGGAAACTCCCTGGGGATGCTGGGAAAGTGAGGCT  800
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTG-AATAGCATCCAAGGAAACTCCCTGGGGATGCTGGGAAAGTGAGGCT  799

seq1  TACCTTGTACCTTGATAGCTCTGATATTTTCCTCAGATTCTGCCTTTATG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TACCTTGTACCTTGATAGCTCTGATA-TTTCCTCAGATTCTGCCTTTATG  848

seq1  GAATCTCAGAGATTTCAGGAAAATTTTTAGACAGAATTAGAGAATGCTCC  900
      |||||||||||| |||||||||| |||||||||||||||||||||||| |
seq2  GAATCTCAGAGA-TTCAGGAAAA-TTTTAGACAGAATTAGAGAATGCTTC  896

seq1  AAGGAGTAGTGGCCTTGCTATCCAGGTTTTTTGCCACTCTGCCCTGCATT  950
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  AAGGAGTAGTGGCCTTGCTATCCAGGTTTTT--GCACTCTGCCCTGCATT  944

seq1  CAATTCCAGGGCTTCTTATTCACTGTCATAACTAGCTTAAGCAGAAGGAA  1000
      ||| ||||||||||  |||||| ||||||||||||| ||||||||||  |
seq2  CAA-TCCAGGGCTTTCTATTCATTGTCATAACTAGC-TAAGCAGAAG--A  990

seq1  AGGTGTTAAGCCACAAATCTA  1021
      | |||||||||||  ||||||
seq2  AAGTGTTAAGCCA-TAATCTA  1010