BAC Information

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BAC

Clone NameB6Ng01-030J03
Chromosome2 (Build37)
Map Location 160,502,127 - 160,678,846
singlet/doubletdoublet
Overlap geneTop1, Plcg1, Zhx3
Upstream geneLOC100043689, Gm826, Mafb, LOC100043892
Downstream geneLpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030J03.bB6Ng01-030J03.g
ACCDH860433DH860434
length1,0681,061
definitionDH860433|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J03, 5' end.DH860434|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,502,127 - 160,503,219)(160,677,786 - 160,678,846)
sequence
gaattcactacatccaaggtgggcaagtgtccttgtgattttgcttagta
gcctaatgatgatggacattcagcagccgctatgctttagagccttttga
aaactagctgctgtactattgtctgggagacaacttaaagttacccggaa
ttcttttatttaaagcatttaagctttattttgatgcctgctttccttgt
aaacacattaatttctttccttctgtattgttaaagcctactcattctct
tataggagtgcctgagatgccattgtctgtcaccctgtctgctgctttgc
atagttggcaaatattagtggctaagttctcttctcagaagatgagcaga
ttctacctaatagtgtttggtttttgtttgctttgtttgggaagaataga
atagaatagaagtaatagaatggttaatttcatgactggagacaaactgc
ctgagttgaactcctcattttccctggacaagttacttaagcattctgtg
cttttaatttccagatgtgcaaagtttagataccagtattcatttcaggg
ttttgttgtagcaagatgtgtataatattaggtggtaatatcgttgctat
ttgctaaatactttaattgaccataaagtaaactttaaattttgatggct
tcccatagccaacatctagccttcctgagtatcagactctgagttttgca
ggagtactactactctctatattttttttctaaagattaattacttttct
agtgcaaaagaggaatgctttattttcccattttactgccatccctcact
tgtcctttctcatgccttccttctgcttaaggtctttaaagaaaccctgc
cattttttctttagtttgtttagcttctatgagaatcatagaccagaagt
ttcataattgtcacctagaatagcatggctattttctcccaccatcttta
tcatagttcttctctcctctctcctcgactctcctctctcctcttctctt
cccccttccttctcatgatcatcatcattaatcagtgttgaagatagtca
gcatgccatatgaaaaaa
gaattcattgtgatttctttaatggattacaggatggagataaatttcta
ctaagtaaaatttttgtccttttgctcagatttttaaatactacctcttt
tttgtcagcttgctgatagccacttggaatatagtgaataagtaaaatat
aatcatttctctgtggcattttcacctggagtgcaaaaagcttgaaagac
tcattggattgtttaagacagtcttaactgacattaattaaactgttgaa
aggaaagagacaaattttaaaacatttggtagacatatccaaatcctgaa
ttggtagagcatggtcatatccttagcatgctacccaagggagacagaga
cctcctttgtagaaaaaatgggagacaccattctgtattcagtaccatga
tataaccagccccttacagatttgaagtggaacaagaagcatctttattt
cttctctattggactgacattgagtttggagccactcatccatggacttg
acattggataacacaactggaattagattattattcaatagtaatgtagt
gattattgaaaaagagaccgctctgcctaggaatcaatcccatcagcaga
cactaaacccccacactattgctgatgccaagaagcacttgttgacagga
acctggtatggctgtttcctgagaggttctaccagcacctgaccaatata
gatgtagatattcaaagtcaaccattggacagagtctggggaccccaatg
gaagagctaggggaaaggactgaaggagctgaaagagattgcaaccctat
agcaagaacaatatcaactaactggaccacccagagctcccagagactaa
accaccaaccaaagagtattcataaagggatccacggctccaggtacata
tgagcagaggacagccttatctgaaatcataggaggggaggcccttgggt
tctgtgaagttgatgtctcagcattagggcatgctaagtggtgaggcagg
atgagcgagtgggtagaggaccaccctcatatgaggccaaagggggaggg
gaataatgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_160502127_160503219
seq2: B6Ng01-030J03.b_45_1112

seq1  GAATTCACTACATCCAAGGTGGGCAAGTGTCCTTGTGATTTTGCTTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACATCCAAGGTGGGCAAGTGTCCTTGTGATTTTGCTTAGTA  50

seq1  GCCTAATGATGATGGACATTCAGCAGCCGCTATGCTTTAGAGCCTTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATGATGATGGACATTCAGCAGCCGCTATGCTTTAGAGCCTTTTGA  100

seq1  AAACTAGCTGCTGTACTATTGTCTGGGAGACAACTTAAAGTTACCCGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGCTGCTGTACTATTGTCTGGGAGACAACTTAAAGTTACCCGGAA  150

seq1  TTCTTTTATTTAAAGCATTTAAGCTTTATTTTGATGCCTGCTTTCCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATTTAAAGCATTTAAGCTTTATTTTGATGCCTGCTTTCCTTGT  200

seq1  AAACACATTAATTTCTTTCCTTCTGTATTGTTAAAGCCTACTCATTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTAATTTCTTTCCTTCTGTATTGTTAAAGCCTACTCATTCTCT  250

seq1  TATAGGAGTGCCTGAGATGCCATTGTCTGTCACCCTGTCTGCTGCTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAGTGCCTGAGATGCCATTGTCTGTCACCCTGTCTGCTGCTTTGC  300

seq1  ATAGTTGGCAAATATTAGTGGCTAAGTTCTCTTCTCAGAAGATGAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGGCAAATATTAGTGGCTAAGTTCTCTTCTCAGAAGATGAGCAGA  350

seq1  TTCTACCTAATAGTGTTTGGTTTTTGTTTGCTTTGTTTGGGAAGAATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTAATAGTGTTTGGTTTTTGTTTGCTTTGTTTGGGAAGAATAGA  400

seq1  ATAGAATAGAAGTAATAGAATGGTTAATTTCATGACTGGAGACAAACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATAGAAGTAATAGAATGGTTAATTTCATGACTGGAGACAAACTGC  450

seq1  CTGAGTTGAACTCCTCATTTTCCCTGGACAAGTTACTTAAGCATTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTGAACTCCTCATTTTCCCTGGACAAGTTACTTAAGCATTCTGTG  500

seq1  CTTTTAATTTCCAGATGTGCAAAGTTTAGATACCAGTATTCATTTCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTTCCAGATGTGCAAAGTTTAGATACCAGTATTCATTTCAGGG  550

seq1  TTTTGTTGTAGCAAGATGTGTATAATATTAGGTGGTAATATCGTTGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTAGCAAGATGTGTATAATATTAGGTGGTAATATCGTTGCTAT  600

seq1  TTGCTAAATACTTTAATTGACCATAAAGTAAACTTTAAATTTTGATGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAATACTTTAATTGACCATAAAGTAAACTTTAAATTTTGATGGCT  650

seq1  TCCCATAGCCAACATCTAGCCTTCCTGAGTATCAGACTCTGAGTTTTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAGCCAACATCTAGCCTTCCTGAGTATCAGACTCTGAGTTTTGCA  700

seq1  GGAGTACTACTACTCTCTATATTTTTTTTCTAAAGATTAATTACTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACTACTACTCTCTATATTTTTTTTCTAAAGATTAATTACTTTTCT  750

seq1  AGTGCAAAAGAGGAATGCTTTATTTTCCCATTTTACTGCCATCCCTCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAAAGAGGAATGCTTTATTTTCCCATTTTACTGCCATCCCTCACT  800

seq1  TGTCCTTTCTCATGCCTTCCTTCTGCTTAAGGTCTTTAAAGAAACCCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCTCATGCCTTCCTTCTGCTTAAGGTCTTTAAAGAAACCCTGC  850

seq1  CATTTTTTTCTTTAGTTTGTTTAGCTTCTATGAGAATCATAGACCAGAAG  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TTTTTTCTTTAGTTTGTTTAGCTTCTATGAGAATCATAGACCAGAAG  899

seq1  TTTCATAATTGTCACCTAAGAAATAGCATGGCTATTTTCTCCCACCATCT  950
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  TTTCATAATTGTCACCTA--GAATAGCATGGCTATTTTCTCCCACCATCT  947

seq1  TTATCATTAGTTTCTTCTCCTCCTCCTCT-TCCTCTAACTCTTCCTCCTC  999
      |||||| ||| |||||||    ||||||| ||||| |   ||  ||||||
seq2  TTATCA-TAG-TTCTTCT----CTCCTCTCTCCTCGA---CT--CTCCTC  986

seq1  T-TCCTCTTCTTCCTCCCCCCTCCCTTCTTCATGATCATCATCATTAAAA  1048
      | |||||||||  || |||||| ||||| |||||||||||||||||||  
seq2  TCTCCTCTTCT--CTTCCCCCTTCCTTC-TCATGATCATCATCATTAA--  1031

seq1  TTCAGTTGTTTGAAGTATAAGTCAAGCATGCACATTATGAAAAAA  1093
       |||||   |||||| || |||| ||||||| || ||||||||||
seq2  -TCAGT--GTTGAAG-AT-AGTC-AGCATGC-CA-TATGAAAAAA  1068

seq1: chr2_160677786_160678846
seq2: B6Ng01-030J03.g_65_1125 (reverse)

seq1  CATC-TTATCTCCCCTCCCC--TTTGCCTC-TATGAGGGTGCTCCTCTAC  46
      |||| |||| ||||||||||  || ||||| |||||||||| ||||||||
seq2  CATCATTAT-TCCCCTCCCCCTTTGGCCTCATATGAGGGTGGTCCTCTAC  49

seq1  CCACTCGCTCACTCCTGCCTCACCACCTAGCATGCCCCTAATGCTGGGAC  96
      ||||||||||| |||||||||||||| ||||||| ||||||||||| |||
seq2  CCACTCGCTCA-TCCTGCCTCACCACTTAGCATG-CCCTAATGCTGAGAC  97

seq1  ATCAACCTTCCACAGAA-CCAAGGGCCTCCCCTCCTATTGATTTCAGATA  145
      ||||||  | ||||||| ||||||||||||||||||| ||||||||||||
seq2  ATCAAC--TTCACAGAACCCAAGGGCCTCCCCTCCTA-TGATTTCAGATA  144

seq1  AGGCTGTCCTCTGCTCATATGTACCTGGAGCCGTGGATCCCTTTATGAAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTCCTCTGCTCATATGTACCTGGAGCCGTGGATCCCTTTATGAAT  194

seq1  ACTCTTTGGTTGGTGGTTTAGTCTCTGGGAGCTCTGGGTGGTCCAGTTAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGGTTGGTGGTTTAGTCTCTGGGAGCTCTGGGTGGTCCAGTTAG  244

seq1  TTGATATTGTTCTTGCTATAGGGTTGCAATCTCCTTCAGCTCCTTCAGTC  295
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGATATTGTTCTTGCTATAGGGTTGCAATCTCTTTCAGCTCCTTCAGTC  294

seq1  C-TTCCCCTAGCTCTTCCATTGGGGTCCCCAGACTCTGTCCAATGGTTGA  344
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCTAGCTCTTCCATTGGGGTCCCCAGACTCTGTCCAATGGTTGA  344

seq1  CTTTGAATATCTACATCTATATTGGTCAGGTGCTGGTAGAACCTCTCAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATATCTACATCTATATTGGTCAGGTGCTGGTAGAACCTCTCAGG  394

seq1  AAACAGCCATACCAGGTTCCTGTCAACAAGTGCTTCTTGGCATCAGCAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCCATACCAGGTTCCTGTCAACAAGTGCTTCTTGGCATCAGCAAT  444

seq1  AGTGTGGGGGTTTAGTGTCTGCTGATGGGATTGATTCCTAGGCAGAGCGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGGGTTTAGTGTCTGCTGATGGGATTGATTCCTAGGCAGAGCGG  494

seq1  TCTCTTTTTCAATAATCACTACATTACTATTGAATAATAATCTAATTCCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTCAATAATCACTACATTACTATTGAATAATAATCTAATTCCA  544

seq1  GTTGTGTTATCCAATGTCAAGTCCATGGATGAGTGGCTCCAAACTCAATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTATCCAATGTCAAGTCCATGGATGAGTGGCTCCAAACTCAATG  594

seq1  TCAGTCCAATAGAGAAGAAATAAAGATGCTTCTTGTTCCACTTCAAATCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCAATAGAGAAGAAATAAAGATGCTTCTTGTTCCACTTCAAATCT  644

seq1  GTAAGGGGCTGGTTATATCATGGTACTGAATACAGAATGGTGTCTCCCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGGCTGGTTATATCATGGTACTGAATACAGAATGGTGTCTCCCAT  694

seq1  TTTTTCTACAAAGGAGGTCTCTGTCTCCCTTGGGTAGCATGCTAAGGATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTACAAAGGAGGTCTCTGTCTCCCTTGGGTAGCATGCTAAGGATA  744

seq1  TGACCATGCTCTACCAATTCAGGATTTGGATATGTCTACCAAATGTTTTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGCTCTACCAATTCAGGATTTGGATATGTCTACCAAATGTTTTA  794

seq1  AAATTTGTCTCTTTCCTTTCAACAGTTTAATTAATGTCAGTTAAGACTGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTCTCTTTCCTTTCAACAGTTTAATTAATGTCAGTTAAGACTGT  844

seq1  CTTAAACAATCCAATGAGTCTTTCAAGCTTTTTGCACTCCAGGTGAAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACAATCCAATGAGTCTTTCAAGCTTTTTGCACTCCAGGTGAAAAT  894

seq1  GCCACAGAGAAATGATTATATTTTACTTATTCACTATATTCCAAGTGGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAGAAATGATTATATTTTACTTATTCACTATATTCCAAGTGGCT  944

seq1  ATCAGCAAGCTGACAAAAAAGAGGTAGTATTTAAAAATCTGAGCAAAAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAAGCTGACAAAAAAGAGGTAGTATTTAAAAATCTGAGCAAAAGG  994

seq1  ACAAAAATTTTACTTAGTAGAAATTTATCTCCATCCTGTAATCCATTAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTTTACTTAGTAGAAATTTATCTCCATCCTGTAATCCATTAAA  1044

seq1  GAAATCACAATGAATTC  1061
      |||||||||||||||||
seq2  GAAATCACAATGAATTC  1061