BAC Information

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BAC

Clone NameB6Ng01-030J18
Chromosome2 (Build37)12 (Build37)
Map Location 153,070,060 - 153,070,15420,880,782 - 20,881,632
singlet/doubletsingletsinglet
Overlap genePofut1
Upstream geneCsnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2
Downstream geneKif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030J18.bB6Ng01-030J18.g
ACCDH860461DH860462
length156851
definitionDH860461|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J18, 5' end.DH860462|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(153,070,060 - 153,070,154)(20,880,782 - 20,881,632)
sequence
tttgatagataaatcagataactacattgaggcagaactttttttaagaa
tattataattagggctggcgagatggctcagtggttaagagagcagactg
ctcttccgaagatcctgagttcaaatcccggcaaccacatagcggctcac
aaccat
gaattctagtctccctccctcaatcagagctgaatcaagtgggttggaaa
agggcaggcctgcatagggcagagggtgtatcccaaacacctctgtgtca
tcaacagtttcacagggtcatctactcccctctccccacccccaccccat
cccctctcccaatcccctcctcccacccgacctgctcacttctgctatgt
ttcctatcatcattgtttgtgtccttctgcctaaagatcttgtctgttcg
cttctcgggcatggactcgtcctcgagcatcttcatcatggaggacacca
tcttgtagatggcgtgcaaaggggcatctgtgagtgtgctctggaggaca
gagggtgggttatggtcattgctctgctaaccaaggagcatggacagggc
agagtcaggacccttctctcatcagaacaagtctcacagacaaggtgctg
ggcaaaggaagccaggaaagtttaagtgacattcaagagcacaggataca
gctggggcatggaagaatggagggctccttggttcagattagaggggagg
ttgtggggcaaagcatctgtctgaaaggaggatctttggtggggagctgg
gaaatacaggagggaaggtcaaaggggaaatacattgagccctgcccacc
catgggtcctgaatctgaagattcaacaactacaggtgggaaatagtcta
gaaaatgaaactggaggtacacagacagtttcttgttatttcccaaataa
tacaaattattattaacatctatagttgtattaggcactgtatataagta
ctttacttattttatggatgtatgtattattttatttgggggaagatgat
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_153070060_153070154
seq2: B6Ng01-030J18.b_113_207 (reverse)

seq1  ATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCG  50
      ||||||||||||| | |||||||||| ||||||||||||||||| |||||
seq2  ATGGTTGTGAGCCGCTATGTGGTTGCCGGGATTTGAACTCAGGATCTTCG  50

seq1  GAAGAGCAGTTGGCGCTCTTAACCACTGAGCCATCTCGCCAGCCC  95
      ||||||||||  || ||||||||||||||||||||||||||||||
seq2  GAAGAGCAGTCTGCTCTCTTAACCACTGAGCCATCTCGCCAGCCC  95

seq1: chr12_20880782_20881632
seq2: B6Ng01-030J18.g_65_915

seq1  GAATTCTAGTCTCCCTCCCTCAATCAGAGCTGAATCAAGTGGGTTGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTCTCCCTCCCTCAATCAGAGCTGAATCAAGTGGGTTGGAAA  50

seq1  AGGGCAGGCCTGCATAGGGCAGAGGGTGTATCCCAAACACCTCTGTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGCCTGCATAGGGCAGAGGGTGTATCCCAAACACCTCTGTGTCA  100

seq1  TCAACAGTTTCACAGGGTCATCTACTCCCCTCTCCCCACCCCCACCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTTTCACAGGGTCATCTACTCCCCTCTCCCCACCCCCACCCCAT  150

seq1  CCCCTCTCCCAATCCCCTCCTCCCACCCGACCTGCTCACTTCTGCTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCCCAATCCCCTCCTCCCACCCGACCTGCTCACTTCTGCTATGT  200

seq1  TTCCTATCATCATTGTTTGTGTCCTTCTGCCTAAAGATCTTGTCTGTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATCATCATTGTTTGTGTCCTTCTGCCTAAAGATCTTGTCTGTTCG  250

seq1  CTTCTCGGGCATGGACTCGTCCTCGAGCATCTTCATCATGGAGGACACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCGGGCATGGACTCGTCCTCGAGCATCTTCATCATGGAGGACACCA  300

seq1  TCTTGTAGATGGCGTGCAAAGGGGCATCTGTGAGTGTGCTCTGGAGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAGATGGCGTGCAAAGGGGCATCTGTGAGTGTGCTCTGGAGGACA  350

seq1  GAGGGTGGGTTATGGTCATTGCTCTGCTAACCAAGGAGCATGGACAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGGTTATGGTCATTGCTCTGCTAACCAAGGAGCATGGACAGGGC  400

seq1  AGAGTCAGGACCCTTCTCTCATCAGAACAAGTCTCACAGACAAGGTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGGACCCTTCTCTCATCAGAACAAGTCTCACAGACAAGGTGCTG  450

seq1  GGCAAAGGAAGCCAGGAAAGTTTAAGTGACATTCAAGAGCACAGGATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGAAGCCAGGAAAGTTTAAGTGACATTCAAGAGCACAGGATACA  500

seq1  GCTGGGGCATGGAAGAATGGAGGGCTCCTTGGTTCAGATTAGAGGGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCATGGAAGAATGGAGGGCTCCTTGGTTCAGATTAGAGGGGAGG  550

seq1  TTGTGGGGCAAAGCATCTGTCTGAAAGGAGGATCTTTGGTGGGGAGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGGCAAAGCATCTGTCTGAAAGGAGGATCTTTGGTGGGGAGCTGG  600

seq1  GAAATACAGGAGGGAAGGTCAAAGGGGAAATACATTGAGCCCTGCCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAGGAGGGAAGGTCAAAGGGGAAATACATTGAGCCCTGCCCACC  650

seq1  CATGGGTCCTGAATCTGAAGATTCAACAAACTACAGGTGGGAAATAGTCT  700
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATGGGTCCTGAATCTGAAGATTCAAC-AACTACAGGTGGGAAATAGTCT  699

seq1  AGAAAATGAAACTGGAGGTACACAGACAGTTTCTTGTTATTTCCCAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGAAACTGGAGGTACACAGACAGTTTCTTGTTATTTCCCAAATA  749

seq1  ATACAAATTATTATTAACATCTATAGTTGTATTAGGCACTGTATATAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATTATTATTAACATCTATAGTTGTATTAGGCACTGTATATAAGT  799

seq1  ACTTTACTTATTTTATGGATGTATGTAATTATTTATTTGGGGG-AGATGA  849
      ||||||||||||||||||||||||||| |  |||||||||||| ||||||
seq2  ACTTTACTTATTTTATGGATGTATGTATTATTTTATTTGGGGGAAGATGA  849

seq1  TC  851
      ||
seq2  TC  851