BAC Information

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BAC

Clone NameB6Ng01-030M11
Chromosome2 (Build37)
Map Location 143,971,858 - 144,131,960
singlet/doubletdoublet
Overlap geneEG433481, Snx5, 8430406I07Rik, Ovol2
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160
Downstream genePpia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030M11.bB6Ng01-030M11.g
ACCDH860580DH860581
length1,053900
definitionDH860580|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M11, 5' end.DH860581|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,971,858 - 143,972,920)(144,131,062 - 144,131,960)
sequence
gaattcatcggcatccccagctgtgtagaaagcctgagaccagcctgagc
taggtcaaacagctctctacaaacaaagatctctcaaaaaggcagataga
taggtgggtgtgttggtacatgcttttaatcccagtactctagagacaga
ggctggtggatctctgtaaattaagctagcctggtctatgttacttgcag
accagttagggctacaaaataaaagggtagatacaggaaaagaagcagta
tggagactgtagcagataggaatgtaagcccagctctgggaggatcacag
ttcaaaaccagcctgggaaatatagtgggactttatttaaaaaaaaaata
agtaaaggaaaaacagtcaggcagtggtgcccgacagtggtggcacacac
ctgggagacagaggcagatggatctctatgagtttgaggccagcctgatc
tacagaactagttccaggacagccagggctgcacagaaaaaccttgtctt
gaaattttaattaattaattaattaattaaaaagtcaaaacaagaacagc
ccactccaaaccttctaacaaacatacccggaggctgcagagatggctca
gcagttaagagcctgcgctactcttacagagggacctctgagagttccca
acacccatacacacggagcagcccactggtgcctataaatcaaactctgg
gggatctgatgcctctgggctgtgtcggcacctgaactcatgtgcacaca
cctacacacaagacactcacatacacataattaaaataaaaatcttttta
aaacgtaatccttcaacctctctctccacaaaggcttgggaccacccagt
cttctcaaattctctagcctgggctcctttcaggcctacacccttcccaa
tctttaatatccactccagaaagttcctcctggggaccgctccagatatt
gcttccgaggtcgacttcagctgcctgtctcatcgtcctttagtcccttc
tttagacccatatcccagtgtcatggtcaggggtcctgggatactggtaa
gat
gaattcccgggaaactgtcagtacgtaaattgaaaacacttgacctggct
gataaaagacgagaccattaaattagatgaaagaaagttaatctctctcc
cagagccaagtggtgggttctggctcactggcgcccacatgtgttaggtt
tgttcagctggctgccagaaccctggtacatggttctggtcccactctcc
ccacatcaaagttcttagccaagggagacttttatggcttggtccggagg
gaagcttgggcgtggctctgacgaactggtgaccttctgccccttgtcct
tgcaggcatccgcccctacaaatgtgaggtgtgtaacaaggccttcaccc
agcggtgttccttggagtcccacctaaagaagatccacggggtacagcag
cagtatgcctacaagcagcgtcgcgacaaactctacgtgtgtgaggattg
cggctacacgggccccacccaggaggacctgtatctgcatgtgaacagtg
accatccagggagcacatttctcaaaaagacttccaaaaaagttggcggc
ccttatgcagaacaagctgacgtccccgctgcaggagaattccaccctga
gtgaagaggaggaaaaaaagtgaagagcgagcaagaaaaagcagaggaga
gacgccggcgccacgttttactccgacttattggtctgaggcgtacccct
ctgctcccctggatcttttcatattcagtccaccttctctcttcttttgg
gacagcaacagtaagaagcaccccaaagttgtcagtcattctgccacaac
aggccctgtgaattgtttcttggtggctgaggtcacatacgggttctgtg
tgtatgtgtgtctgccggctgtccgttagtgtgggtttttttttgtttcc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143971858_143972920
seq2: B6Ng01-030M11.b_43_1095

seq1  GAATTCATCGGCATCCCCAGCTGTGTAGAAAGCCTGAGACCAGCCTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGGCATCCCCAGCTGTGTAGAAAGCCTGAGACCAGCCTGAGC  50

seq1  TAGGTCAAACAGCTCTCTACAAACAAAGATCTCTCAAAAAGGCAGATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAAACAGCTCTCTACAAACAAAGATCTCTCAAAAAGGCAGATAGA  100

seq1  TAGGTGGGTGTGTTGGTACATGCTTTTAATCCCAGTACTCTAGAGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGGTGTGTTGGTACATGCTTTTAATCCCAGTACTCTAGAGACAGA  150

seq1  GGCTGGTGGATCTCTGTAAATTAAGCTAGCCTGGTCTATGTTACTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGGATCTCTGTAAATTAAGCTAGCCTGGTCTATGTTACTTGCAG  200

seq1  ACCAGTTAGGGCTACAAAATAAAAGGGTAGATACAGGAAAAGAAGCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTAGGGCTACAAAATAAAAGGGTAGATACAGGAAAAGAAGCAGTA  250

seq1  TGGAGACTGTAGCAGATAGGAATGTAAGCCCAGCTCTGGGAGGATCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTGTAGCAGATAGGAATGTAAGCCCAGCTCTGGGAGGATCACAG  300

seq1  TTCAAAACCAGCCTGGGAAATATAGTGGGACTTTATTTAAAAAAAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACCAGCCTGGGAAATATAGTGGGACTTTATTTAAAAAAAAAATA  350

seq1  AGTAAAGGAAAAACAGTCAGGCAGTGGTGCCCGACAGTGGTGGCACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGAAAAACAGTCAGGCAGTGGTGCCCGACAGTGGTGGCACACAC  400

seq1  CTGGGAGACAGAGGCAGATGGATCTCTATGAGTTTGAGGCCAGCCTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGACAGAGGCAGATGGATCTCTATGAGTTTGAGGCCAGCCTGATC  450

seq1  TACAGAACTAGTTCCAGGACAGCCAGGGCTGCACAGAAAAACCTTGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACTAGTTCCAGGACAGCCAGGGCTGCACAGAAAAACCTTGTCTT  500

seq1  GAAATTTTAATTAATTAATTAATTAATTAAAAAGTCAAAACAAGAACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTAATTAATTAATTAATTAATTAAAAAGTCAAAACAAGAACAGC  550

seq1  CCACTCCAAACCTTCTAACAAACATACCCGGAGGCTGCAGAGATGGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCAAACCTTCTAACAAACATACCCGGAGGCTGCAGAGATGGCTCA  600

seq1  GCAGTTAAGAGCCTGCGCTACTCTTACAGA-GGACCTCTGAGAGTTCCCA  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCAGTTAAGAGCCTGCGCTACTCTTACAGAGGGACCTCTGAGAGTTCCCA  650

seq1  ACACCCATACACACGGAGCAGCCCACTGGTGCCTATAAATCAAACTCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATACACACGGAGCAGCCCACTGGTGCCTATAAATCAAACTCTGG  700

seq1  GGGATCTGATGCCTCTGGGCTGTGTCGGCACCTGAACTCATGTGCACACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTGATGCCTCTGGGCTGTGTCGGCACCTGAACTCATGTGCACACA  750

seq1  CCTACACACAAGACACTCACATACACATAATTAAAAATAAAAATCTTTTT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTACACACAAGACACTCACATACACATAATT-AAAATAAAAATCTTTTT  799

seq1  AAAACGTAATCCTTCAACCTCTCTCTCCACAAAGGCTTGGGACCACCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTAATCCTTCAACCTCTCTCTCCACAAAGGCTTGGGACCACCCAG  849

seq1  TCTTCTCAAATTCTCTAGCCTGGGCTCCTTTCAAGCCCTACAACCCTTCC  899
      |||||||||||||||||||||||||||||||| || ||||| ||||||||
seq2  TCTTCTCAAATTCTCTAGCCTGGGCTCCTTTC-AGGCCTAC-ACCCTTCC  897

seq1  CAATCTTAATTATCCACTTCAAGAAGGTTCCTCCTGGGGACCGCTCCAAG  949
      ||||||| | ||||||| || |||| ||||||||||||||||||||| ||
seq2  CAATCTTTAATATCCAC-TCCAGAAAGTTCCTCCTGGGGACCGCTCC-AG  945

seq1  ATATTGCTTCTGAGGTCGACTTCAGCTGCCTGTCTCCATCGTCCTTTAGT  999
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  ATATTGCTTCCGAGGTCGACTTCAGCTGCCTGTCT-CATCGTCCTTTAGT  994

seq1  CCCTTCTTTAGACCCAATATCCCAGTAGTACATTGTCAGGGGTCCTGGGG  1049
      ||||||||||||||| |||||||||| || ||| |||||||||||| |||
seq2  CCCTTCTTTAGACCC-ATATCCCAGT-GT-CATGGTCAGGGGTCCT-GGG  1040

seq1  ATACTGGGTAAGAT  1063
      ||||| ||||||||
seq2  ATACT-GGTAAGAT  1053

seq1: chr2_144131062_144131960
seq2: B6Ng01-030M11.g_70_969 (reverse)

seq1  GGAAACAAAAAAAAACCCACACATAACAGACAGACAGACAGACACACATA  50
      |||||||||||||||||||||| |||| ||||| | | ||||||||||||
seq2  GGAAACAAAAAAAAACCCACAC-TAACGGACAG-CCGGCAGACACACATA  48

seq1  CACACAGAAACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGG  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAG-AACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGG  97

seq1  CCTGTTGTGGCAGAATGACTGACAACTTTGGGGTGCTTCTTACTGTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTGGCAGAATGACTGACAACTTTGGGGTGCTTCTTACTGTTGCT  147

seq1  GTCCCAAAAGAAGAGAG-AGGTGGACTGAATATGAAAAGATCCAGGGGAG  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTCCCAAAAGAAGAGAGAAGGTGGACTGAATATGAAAAGATCCAGGGGAG  197

seq1  CAGAGGGGTACGCCTCAGACC-ATAAGTCGGAGT-AAACGTGGCGCCGGC  247
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  CAGAGGGGTACGCCTCAGACCAATAAGTCGGAGTAAAACGTGGCGCCGGC  247

seq1  GTCTCTCCTCTGCTTTTTCTTGCTCGCTCTTCACTTTTTTTCCTCCTCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTCTGCTTTTTCTTGCTCGCTCTTCACTTTTTTTCCTCCTCTT  297

seq1  CACTCAGGGTGGAATTCTCCTGCAGCGGGGACGTCAGCTTGTTCTGCATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGGTGGAATTCTCCTGCAGCGGGGACGTCAGCTTGTTCTGCATA  347

seq1  AGGGCCGCCAAC-TTTTTGGAAGTCTTTTTGAGAAATGTGCTCCCTGGAT  396
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGGCCGCCAACTTTTTTGGAAGTCTTTTTGAGAAATGTGCTCCCTGGAT  397

seq1  GGTCACTGTTCACATGCAGATACAGGTCCTCCTGGGTGGGGCCCGTGTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGTTCACATGCAGATACAGGTCCTCCTGGGTGGGGCCCGTGTAG  447

seq1  CCGCAATCCTCACACACGTAGAGTTTGTCGCGACGCTGCTTGTAGGCATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAATCCTCACACACGTAGAGTTTGTCGCGACGCTGCTTGTAGGCATA  497

seq1  CTGCTGCTGTACCCCGTGGATCTTCTTTAGGTGGGACTCCAAGGAACACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGTACCCCGTGGATCTTCTTTAGGTGGGACTCCAAGGAACACC  547

seq1  GCTGGGTGAAGGCCTTGTTACACACCTCACATTTGTAGGGGCGGATGCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGAAGGCCTTGTTACACACCTCACATTTGTAGGGGCGGATGCCT  597

seq1  GCAAGGACAAGGGGCAGAAGGTCACCAGTTCGTCAGAGCCACGCCCAAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACAAGGGGCAGAAGGTCACCAGTTCGTCAGAGCCACGCCCAAGC  647

seq1  TTCCCTCCGGACCAAGCCATAAAAGTCTCCCTTGGCTAAGAACTTTGATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCGGACCAAGCCATAAAAGTCTCCCTTGGCTAAGAACTTTGATG  697

seq1  TGGGGAGAGTGGGACCAGAACCATGTACCAGGGTTCTGGCAGCCAGCTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGAGTGGGACCAGAACCATGTACCAGGGTTCTGGCAGCCAGCTGA  747

seq1  ACAAACCTAACACATGTGGGCGCCAGTGAGCCAGAACCCACCACTTGGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCTAACACATGTGGGCGCCAGTGAGCCAGAACCCACCACTTGGCT  797

seq1  CTGGGAGAGAGATTAACTTTCTTTCATCTAATTTAATGGTCTCGTCTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAGAGATTAACTTTCTTTCATCTAATTTAATGGTCTCGTCTTTT  847

seq1  ATCAGCCAGGTCAAGTGTTTTCAATTTACGTACTGACAGTTTCCCGGGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCAGGTCAAGTGTTTTCAATTTACGTACTGACAGTTTCCCGGGAA  897

seq1  TTC  899
      |||
seq2  TTC  900