BAC Information

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BAC

Clone NameB6Ng01-030N11
Chromosome2 (Build37)
Map Location 126,448,406 - 126,567,265
singlet/doubletdoublet
Overlap geneGabpb1, Usp8, LOC100043714
Upstream geneCep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc
Downstream geneUsp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030N11.bB6Ng01-030N11.g
ACCDH860624DH860625
length1,130412
definitionDH860624|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N11, 5' end.DH860625|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,566,115 - 126,567,265)(126,448,406 - 126,448,823)
sequence
gaattcaagtcaccaggtttatctggcaagagcctttatctgcccagcca
ttcactcacccaagtaatcatcgtaaaacaaatctgaccatgtttctctt
ttgtttaataacatcctattttacattgctattcatatttaagttgtagt
acacatacatatacctacatacaaaatgaataaatgaattaaataaactt
tatcatagcctgactactattcattctttaatacttaaacatttttcttc
ctttatctatttttaatatttacttatttgtattttatgtgccttggtgt
tttgcctgtatgtccatgtgagtgtgtcaggcccctgggactggaattac
agacagttgtgagctgctatgtcagtgtgggaactgaacccaaatcttct
gggagagcagccagtactcttaactgctaagccatctttccagccccaac
atagctatttattattttgtgtgtgcacactgcatgtgatgtgaatgcag
agtcaagtgtgaaggtcaaaaggcaactcctggaagttgggtcttttcct
gccatgttgcaggattcagggactgaagcggacctcaggtcatcaggcct
gtgcataaatgcctgtacccactaaaccatctcaccagccccacttcttt
attcttgtaccttattattatatatattttacagctagtattaattttac
ttatttagtagggagagtcagaagacagcctgcaggagttggttcccctt
ctaccacataggtcctagagttcaaactcaagccacctttaactactgag
ccatcttgttggccctccatcttactgtttgagccagggtctttcactga
gcctggagctcactgatcaagtagatggctagccagcagcccagattccc
ttactctggctcccagttccaggattacagagtgtgatgctgcactggct
ctcatgtggctgtgaggcctcactcagatctcacacttgcacaagagctc
tctattggctggcatctgcagcacacatctgaggagaagctgccgattct
tagaactgagcactgaaaggtgctttagctgctctaacaccttgtgagaa
gtaacctacctcttggaaatactggtgtgt
ttgtttgctgggccaacccacatgccctttagcagatgactaactaaagc
aggtgaataattaaaaaaaggttggtttttttttttttttagaaagtaat
gtatttacacaacagaatatcacacagccataaagaagaatgcaaacttg
tcatttgcagtaatatgtgcaaataatggaggaaatgttaatgtaatcaa
tccaggaaagacacaggaaagcagatgccacactttctctcacttgtgta
tggaaatctgtaagtcggattgtacaatatggaatagtggacattagaga
taaagggggaaagaacagagggaacaagaagaaaggaggggaaactttta
gggacaaggaaaggggctgagcagaaatgatatataacagggatcctggg
cagaaaaaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126566115_126567265
seq2: B6Ng01-030N11.b_46_1175 (reverse)

seq1  ACACA-CAGTATTTCCAAGAAATGTTAGGGTTACTTCTCACAATGTTGTT  49
      ||||| ||||||||||||||   | || ||||||||||||||| | ||||
seq2  ACACACCAGTATTTCCAAGA---GGTA-GGTTACTTCTCACAA-GGTGTT  45

seq1  AGAGCAGCTAAAGCACCTCTCAGTGCTCACGTTCT-AGAATACGGCAGCT  98
      |||||||||||||||||| |||||||||| ||||| ||||| ||||||| 
seq2  AGAGCAGCTAAAGCACCTTTCAGTGCTCA-GTTCTAAGAAT-CGGCAGC-  92

seq1  TTCTCCCTCAGATGTGGTGCTGGCAGATGGCCCAGCCAATAGAGAGCCTC  148
      |||| |||||||||| ||||| |||||||  ||||||||||||||| |||
seq2  TTCT-CCTCAGATGT-GTGCT-GCAGATG--CCAGCCAATAGAGAG-CTC  136

seq1  TTGTGCAAGTGTGAGGATCTGAGTTGAGGGCCTCACAGCCACATGAGAGC  198
      |||||||||||||| |||||||| ||| ||||||||||||||||||||||
seq2  TTGTGCAAGTGTGA-GATCTGAG-TGA-GGCCTCACAGCCACATGAGAGC  183

seq1  CAGGTGCAGCATCACACTCCTGTAATCCTGGAACTGGGGAGGCCAGAGTA  248
      || ||||||||||||||| |||||||||||||||||||   |||||||||
seq2  CA-GTGCAGCATCACACT-CTGTAATCCTGGAACTGGG--AGCCAGAGTA  229

seq1  AGGGAATCTTGGGCCTGCTGGCTAGCCATCTACTTGATCAGTGAGCTCCA  298
      |||||||||  || ||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCT--GGGCTGCTGGCTAGCCATCTACTTGATCAGTGAGCTCCA  277

seq1  GGCTCAGTGAAAGACCCTGGCTCAAACAGTAAGATGGAGGGCCAACAAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTGAAAGACCCTGGCTCAAACAGTAAGATGGAGGGCCAACAAGA  327

seq1  TGGCTCAGTAGTTAAAGGTGGCTTGAGTTTGAACTCTAGGACCTATGTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGTAGTTAAAGGTGGCTTGAGTTTGAACTCTAGGACCTATGTGG  377

seq1  TAGAAGGGGAACCAACTCCTGCAGGCTGTCTTCTGACTCTCCCTACTAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGGGAACCAACTCCTGCAGGCTGTCTTCTGACTCTCCCTACTAAA  427

seq1  TAAGTAAAATTAATACTAGCTGTAAAATATATATAATAATAAGGTACAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAATTAATACTAGCTGTAAAATATATATAATAATAAGGTACAAG  477

seq1  AATAAAGAAGTGGGGCTGGTGAGATGGTTTAGTGGGTACAGGCATTTATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAGTGGGGCTGGTGAGATGGTTTAGTGGGTACAGGCATTTATG  527

seq1  CACAGGCCTGATGACCTGAGGTCCGCTTCAGTCCCTGAATCCTGCAACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCTGATGACCTGAGGTCCGCTTCAGTCCCTGAATCCTGCAACAT  577

seq1  GGCAGGAAAAGACCCAACTTCCAGGAGTTGCCTTTTGACCTTCACACTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAAAGACCCAACTTCCAGGAGTTGCCTTTTGACCTTCACACTTG  627

seq1  ACTCTGCATTCACATCACATGCAGTGTGCACACACAAAATAATAAATAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCATTCACATCACATGCAGTGTGCACACACAAAATAATAAATAGC  677

seq1  TATGTTGGGGCTGGAAAGATGGCTTAGCAGTTAAGAGTACTGGCTGCTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGGGGCTGGAAAGATGGCTTAGCAGTTAAGAGTACTGGCTGCTCT  727

seq1  CCCAGAAGATTTGGGTTCAGTTCCCACACTGACATAGCAGCTCACAACTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGATTTGGGTTCAGTTCCCACACTGACATAGCAGCTCACAACTG  777

seq1  TCTGTAATTCCAGTCCCAGGGGCCTGACACACTCACATGGACATACAGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATTCCAGTCCCAGGGGCCTGACACACTCACATGGACATACAGGC  827

seq1  AAAACACCAAGGCACATAAAATACAAATAAGTAAATATTAAAAATAGATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCAAGGCACATAAAATACAAATAAGTAAATATTAAAAATAGATA  877

seq1  AAGGAAGAAAAATGTTTAAGTATTAAAGAATGAATAGTAGTCAGGCTATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAAATGTTTAAGTATTAAAGAATGAATAGTAGTCAGGCTATG  927

seq1  ATAAAGTTTATTTAATTCATTTATTCATTTTGTATGTAGGTATATGTATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTATTTAATTCATTTATTCATTTTGTATGTAGGTATATGTATG  977

seq1  TGTACTACAACTTAAATATGAATAGCAATGTAAAATAGGATGTTATTAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTACAACTTAAATATGAATAGCAATGTAAAATAGGATGTTATTAAA  1027

seq1  CAAAAGAGAAACATGGTCAGATTTGTTTTACGATGATTACTTGGGTGAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGAAACATGGTCAGATTTGTTTTACGATGATTACTTGGGTGAGT  1077

seq1  GAATGGCTGGGCAGATAAAGGCTCTTGCCAGATAAACCTGGTGACTTGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTGGGCAGATAAAGGCTCTTGCCAGATAAACCTGGTGACTTGAA  1127

seq1  TTC  1151
      |||
seq2  TTC  1130

seq1: chr2_126448406_126448823
seq2: B6Ng01-030N11.g_63_480

seq1  GAATTCTTGTTTGCAGGGCCAACCCACATGCCCTTTAGCAGATGACTAAC  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTGCTGGGCCAACCCACATGCCCTTTAGCAGATGACTAAC  50

seq1  TAAAGCAGGTGAATAATTAAAAAAAGGTTGGTTTTTTTTTTTTTTTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGGTGAATAATTAAAAAAAGGTTGGTTTTTTTTTTTTTTTAGAA  100

seq1  AGTAATGTATTTACACAACAGAATATCACACAGCCATAAAGAAGAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTATTTACACAACAGAATATCACACAGCCATAAAGAAGAATGCA  150

seq1  AACTTGTCATTTGCAGTAATATGTGCAAATAATGGAGGAAATGTTAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCATTTGCAGTAATATGTGCAAATAATGGAGGAAATGTTAATGT  200

seq1  AATCAATCCAGGAAAGACACAGGAAAGCAGATGCCACACGTTCTCTCACT  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATCAATCCAGGAAAGACACAGGAAAGCAGATGCCACACTTTCTCTCACT  250

seq1  TGTGTATGGAAATCTGTAAGTCGGATTGTACAAGATGGAATAGTGGACAT  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTGTATGGAAATCTGTAAGTCGGATTGTACAATATGGAATAGTGGACAT  300

seq1  TAGAGATAAAGGGGGAAAGAACAGAGGGAACAAGAAGAAAGGAGGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATAAAGGGGGAAAGAACAGAGGGAACAAGAAGAAAGGAGGGGAAA  350

seq1  CTTTTAGGGACAAGGAAAGGGGCTGAGCAGAAATGATATAGAACAGGGAT  400
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTTTAGGGACAAGGAAAGGGGCTGAGCAGAAATGATATATAACAGGGAT  400

seq1  CCTGGGCAGAAAAAAGAT  418
      ||||||||||||||||||
seq2  CCTGGGCAGAAAAAAGAT  418