BAC Information

Click to search

BAC

Clone NameB6Ng01-031G12
Chromosome2 (Build37)8 (Build37)
Map Location 142,776,686 - 142,777,69852,334,551 - 52,335,650
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031G12.bB6Ng01-031G12.g
ACCDH861029DH861030
length9481,088
definitionDH861029|Mus musculus domesticus DNA, BAC clone: B6Ng01-031G12, 5' end.DH861030|Mus musculus domesticus DNA, BAC clone: B6Ng01-031G12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,686 - 142,777,698)(52,334,551 - 52,335,650)
sequence
gaattctttgttcagttctgagccccatttttactggggttatttgattt
tctggagtccaccttcatgagttctttatatataatggatattagtcacc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgccgaagctttgcagtttcat
gaggtaccatttgtcaattcttgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgttcccatatcttcaaggctttccccattt
tctcccctataagtttcagtgtctctggttttatgtgaagttccttgatc
aacttatatttgatcttagtacacggagataggaatggatcgattcacat
tcttctacatgataacaaccagttgtgccccatcatgtgttgacaatgct
gtctttcttccactggatggtttcagctcccttgtcgaagatcaagtgac
cataggttcatttctgggtcttcaattctattccattggtctacttgtct
gtcggtataccagtaccatgcagtttttatcacaattgctctgtagtaaa
gctttaggtcaggcatggtgattccaccagaggttcttttatctttgaga
agagtttttgctatcctaggtttttttgttattccagatgaatttgcaga
ttgctctttctaattcgttgaagaattgagttgtaattttgatggggatt
gcattgaatctatagattgcttttggcaagatagccatttttacaatgtt
gatcctgccaatccatgagcatgggagatctttccatcttctgagatctt
ctttaatttctttcctcagagacttgaagttttatatacagatctttcag
ttcctttgttagagtcacgccaagatactctggtacctaaaccacaga
gaattctattacaagtgggaaaatatctacctagttcactttaaagacgt
aacaagggctctcccaaggataaaaaggagaatttcatctattctacatt
atgtggctttcttcctatttggtctctagttatgaggtgttgaaaagtgc
atcttctgataaagctgccatctgcagggttccttagactaaccactaac
aaatgcaaactgacacttctgaaatggattagtgtgcatatcaacaatct
tctaatggctttcatcctttctatcacatttgaccttgccttttggaggc
atttgataaatgattaattattcattctagaacttgatccttcaacaact
aaactacttcccggaaacaaatatggatgtgtattagagcatcagaataa
atcaattattcattgatcctttgccttgtatttgcctagtgtgtgtcaat
ctctaagttaggcagactgtgaggaaaaaagaaaaaggaatacatgctct
ctgaccaattttatttccagaatgaaacagatactaacagaaggcttggg
ctgagttattatgattagctacttttttgtgtctatcctcagtaatttcc
attcaacctgtgaatgtgtgttcttggtgaagaacgaagattaaaaatgt
agcagcgtaatacagcctcaaatatcaaaatatgtgagtacatgaaaatg
aacatgaaaggaaaactcattagtaattaaataaaaataaaactgcactg
aaagtggaaatccattctcatcactgttaaatataacaaaacagcagaaa
tacacaaaatcccaaatgtgagtatttcaaggtgtttcaggtggccataa
aatatgatatatatatgcatatattaacaagtatacatgtgattcatgtg
taaatatgtatatacatatatatatacatatataaagaacatattattat
atataattttatataaatttttttataaacacatacacacaccacccacc
cacacaccacacacacccccacccattattccaattggaaagggagtgaa
actggaggaatgaaaaatggaacctgaaaatgtcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776686_142777698
seq2: B6Ng01-031G12.b_42_583 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50
      |||||||||||||||||||||||||||||||||||        |||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGA--------ACCTATG  42

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGAC  100
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  GTCACTTGATCTTCGACAAGGGAGCTGAAACCATCCAGTGGAAGAAAGAC  92

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      |||||| ||||||  || ||  ||||||||||||||||||||||||||||
seq2  AGCATTGTCAACACATGATG-GGGCACAACTGGTTGTTATCATGTAGAAG  141

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      |||| |||||||||||| | ||||||| ||||||||| |||||| |||||
seq2  AATGTGAATCGATCCATTCCTATCTCCGTGTACTAAGATCAAATATAAGT  191

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGGGGAG  241

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  300
      ||| ||||| ||||||||||||||||||| |||||||| |||||||||||
seq2  AAAATGGGG-AAAGCCTTGAAGATATGGGAACAGGGGAAAAATTCCTGAA  290

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  350
       ||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATTGACAAATGGTACC  340

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      | |||||||| ||||| ||| |||||||||||||||||||||||||||||
seq2  TCATGAAACTGCAAAGCTTCGGCAAGGCAAAAGACACCGTCAATAAGACA  390

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  440

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  500
      |||| ||||||||||||  |||||||||||||||| ||||||||||| ||
seq2  TAGGTGACTAATATCCATTATATATAAAGAACTCATGAAGGTGGACTCCA  490

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  550
      |||||||||||||||||| | |||||||||||||| ||            
seq2  GAAAATCAAATAACCCCAGT-AAAAATGGGGCTCAGAA----------CT  529

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  600
      ||| |||||    |||                                  
seq2  GAACAAAGA----ATTC---------------------------------  542

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  650
                                                        
seq2  --------------------------------------------------  542

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  700
                                                        
seq2  --------------------------------------------------  542

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  750
                                                        
seq2  --------------------------------------------------  542

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  800
                                                        
seq2  --------------------------------------------------  542

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  850
                                                        
seq2  --------------------------------------------------  542

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  900
                                                        
seq2  --------------------------------------------------  542

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  950
                                                        
seq2  --------------------------------------------------  542

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  1000
                                                        
seq2  --------------------------------------------------  542

seq1  GAACAAAGAATTC  1013
                   
seq2  -------------  542

seq1: chr8_52334551_52335650
seq2: B6Ng01-031G12.g_68_1155 (reverse)

seq1  TTAAGACATTCTTCAGGTCTCATTTTTCATTCCTCCAGTTTTCACTCCCT  50
      |||||||||| |||||||  |||||||||||||||||| |||||||||||
seq2  TTAAGACATT-TTCAGGTTCCATTTTTCATTCCTCCAG-TTTCACTCCCT  48

seq1  TTCCATTTGGAATTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100
      ||||| ||||||| ||| ||| | |||||||||   ||||||| ||| ||
seq2  TTCCAATTGGAATAATGGGTGGGGGTGTGTGTG---GTGTGTGGGTGGGT  95

seq1  GTGTGTGTGTATGTGTTTATAAATATATTTATATAAAATTTATATATATA  150
      | ||||||||||||||||||||| | |||||||||||| |||||||||  
seq2  G-GTGTGTGTATGTGTTTATAAAAAAATTTATATAAAA-TTATATATAAT  143

seq1  TATATGTTTCTTTATATATGTATATTATATATGTATTATACATATTTACA  200
       ||||| ||||||||||||||||| |||||||||| ||||||||||||||
seq2  AATATG-TTCTTTATATATGTATA-TATATATGTA-TATACATATTTACA  190

seq1  CATGAATCACATGTATACTTGTTTAATATATGCATATATATATCATATTT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATGAATCACATGTATACTTG-TTAATATATGCATATATATATCATATTT  239

seq1  TATGGCCACCTGAAACACCTTGAAATACTCACATTTGGGATTTTGTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCACCTGAAACACCTTGAAATACTCACATTTGGGATTTTGTGTAT  289

seq1  TTCTGCTGTTTTGTTATATTTTAACAGTGATGAGAATGGATTTCCACTTT  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTGCTGTTTTGTTATA-TTTAACAGTGATGAGAATGGATTTCCACTTT  338

seq1  CAGTGCAGTTTTATTTTTATTTAATTACTAATGAGTTTTCCTTTCATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGTTTTATTTTTATTTAATTACTAATGAGTTTTCCTTTCATGTT  388

seq1  CATTTTCATGTACTCACATATTTTGATATTTGAGGCTGTATTACGCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATGTACTCACATATTTTGATATTTGAGGCTGTATTACGCTGCT  438

seq1  ACATTTTTAATCTTCGTTCTTCACCAAGAACACACATTCACAGGTTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTAATCTTCGTTCTTCACCAAGAACACACATTCACAGGTTGAAT  488

seq1  GGAAATTACTGAGGATAGACACAAAAAAGTAGCTAATCATAATAACTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTACTGAGGATAGACACAAAAAAGTAGCTAATCATAATAACTCAG  538

seq1  CCCAAGCCTTCTGTTAGTATCTGTTTCATTCTGGAAATAAAATTGGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCCTTCTGTTAGTATCTGTTTCATTCTGGAAATAAAATTGGTCAG  588

seq1  AGAGCATGTATTCCTTTTTCTTTTTTCCTCACAGTCTGCCTAACTTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATGTATTCCTTTTTCTTTTTTCCTCACAGTCTGCCTAACTTAGAG  638

seq1  ATTGACACACACTAGGCAAATACAAGGCAAAGGATCAATGAATAATTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACACACACTAGGCAAATACAAGGCAAAGGATCAATGAATAATTGAT  688

seq1  TTATTCTGATGCTCTAATACACATCCATATTTGTTTCCGGGAAGTAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGATGCTCTAATACACATCCATATTTGTTTCCGGGAAGTAGTTT  738

seq1  AGTTGTTGAAGGATCAAGTTCTAGAATGAATAATTAATCATTTATCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTGAAGGATCAAGTTCTAGAATGAATAATTAATCATTTATCAAAT  788

seq1  GCCTCCAAAAGGCAAGGTCAAATGTGATAGAAAGGATGAAAGCCATTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAAAAGGCAAGGTCAAATGTGATAGAAAGGATGAAAGCCATTAGA  838

seq1  AGATTGTTGATATGCACACTAATCCATTTCAGAAGTGTCAGTTTGCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTGATATGCACACTAATCCATTTCAGAAGTGTCAGTTTGCATTT  888

seq1  GTTAGTGGTTAGTCTAAGGAACCCTGCAGATGGCAGCTTTATCAGAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGGTTAGTCTAAGGAACCCTGCAGATGGCAGCTTTATCAGAAGAT  938

seq1  GCACTTTTCAACACCTCATAACTAGAGACCAAATAGGAAGAAAGCCACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTCAACACCTCATAACTAGAGACCAAATAGGAAGAAAGCCACAT  988

seq1  AATGTAGAATAGATGAAATTCTCCTTTTTATCCTTGGGAGAGCCCTTGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGAATAGATGAAATTCTCCTTTTTATCCTTGGGAGAGCCCTTGTT  1038

seq1  ACGTCTTTAAAGTGAACTAGGTAGATATTTTCCCACTTGTAATAGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTTTAAAGTGAACTAGGTAGATATTTTCCCACTTGTAATAGAATTC  1088