BAC Information

Click to search

BAC

Clone NameB6Ng01-031I21
Chromosome2 (Build37)2 (Build37)
Map Location 142,776,681 - 142,777,69610,680,550 - 10,681,625
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031I21.bB6Ng01-031I21.g
ACCDH861134DH861135
length9311,051
definitionDH861134|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I21, 5' end.DH861135|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,681 - 142,777,696)(10,680,550 - 10,681,625)
sequence
gaattctttgttcagttctgagccccattttttaatggtgttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttct
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccacgggatgattgtagctcccttgtcgaagatcaagt
gaccataggtgtgcaagttcatttctgggtcttcaattctattccgttgg
tctacttgtctgtcagtataccagtaccatgcagtttttaccacaattgc
tctgtagtaaatctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttttatcatac
agatctttcacttccttagtagagtcactcc
gaattcaatacaaggagacaaatgtcttttgcaaagatttatttatttac
agtgttgaggactgaatccagtcttcaactgctcaggataaatgtaccac
tgagctgtacccctagccctcggaggagctcttaccagtctatgcagaat
ttacactgttattttaagtgaaaagatttgcttagagcccacgttgctac
tacttaccgtgtgaggtggcgagaactgcttagcctcttccgagttgttt
cctcatataaggagaaatgttcactgtatctacctctacagtttttgctg
aaactaaaatgaatgtgaagtgtgtagctgatcaccaggcaccaggttaa
gtacagactacatctcagttggatgttattgctacttatgcttctatgat
aaccacccctctctagctccatccatttctcttctgacatggcatgttta
gccagtatgaaaagcccaaggaggaaattattcctgtgagttggcattta
ccttctcagcttttgggatcttgaacaaagagatggaattcatgggacac
aatgtgcctgtgaaccgggatctttgctcctttataaagctgacttggtg
cacgccattaaaggcttcaggagacttttgaggctatactaccagtatga
ctgctataacccttacccaaatctttgccttctgagcacctttctagcaa
ttcctccccctttttttacacccacacagcaatttgtggtttcaggcctt
atgtcattgcctatgaagtctaacagcatcatgatctgtcacaaatccat
aggataaacagaagcaaagatttaggctacttgactgaggcactcagtgt
gaaataggaacagagcaatttctctgccgtgttactctctgtacatccca
tcatccctgagtccagacagcctaataatgtagacgaggcagcatagaac
taaaacccagatttctgcttgtcattgttcttactgatgttgttggggac
cagacagtgaaataatttactgctgtgacaggccaaataaaccacgagcc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776681_142777696
seq2: B6Ng01-031I21.b_47_602 (reverse)

seq1  CAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACAC  50
      |||||||||||| |||||||||||||||||||||||||||||   |||||
seq2  CAAGTAGACCAACGGAATAGAATTGAAGACCCAGAAATGAACTTGCACAC  50

seq1  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGA  100
      |||||||||||||||||||||||||||||||| || ||||| | ||||||
seq2  CTATGGTCACTTGATCTTCGACAAGGGAGCTACAATCATCCCGTGGAAGA  100

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  150

seq1  AGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  200
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  AGAAGAATGCGAATCGATCCATACCTATCTCCTTGTACTAAGGTCAAATC  200

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTC  300

seq1  CTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  350

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  400
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAAAGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  400

seq1  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  450

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  500

seq1  CTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAA---AACC  547
      ||||||||||||||||||| |||||||||||||||||||| ||   ||| 
seq2  CTTCAGAAAATCAAATAACACCATTAAAAAATGGGGCTCAGAACTGAAC-  549

seq1  ATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTG  597
               |||||                                    
seq2  --------AAAGAAT-----------------------------------  556

seq1  GTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTA  647
                                                        
seq2  --------------------------------------------------  556

seq1  CTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACA  697
                                                        
seq2  --------------------------------------------------  556

seq1  CTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAC  747
                                                        
seq2  --------------------------------------------------  556

seq1  AGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGA  797
                                                        
seq2  --------------------------------------------------  556

seq1  GAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAA  847
                                                        
seq2  --------------------------------------------------  556

seq1  GACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTT  897
                                                        
seq2  --------------------------------------------------  556

seq1  TACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAAC  947
                                                        
seq2  --------------------------------------------------  556

seq1  TCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGC  997
                                                        
seq2  --------------------------------------------------  556

seq1  TCAGAACTGAACAAAGAAT  1016
                         
seq2  -------------------  556

seq1: chr2_10680550_10681625
seq2: B6Ng01-031I21.g_66_1116 (reverse)

seq1  TGGCTCGGTGGGTTTTATTCTGGGCCTGTCACATGCAGTGAAATTTATTT  50
      |||||| ||||  |||||  | ||||||||||| |||||  || ||||||
seq2  TGGCTC-GTGG--TTTAT--TTGGCCTGTCACA-GCAGT--AAATTATTT  42

seq1  CCAACTGTCTGTGTCCCCAAACAACACTCAGT-AGAACAATGACAAAGCA  99
      |  |||||||| |||||| ||||||| ||||| ||||||||||| |||||
seq2  C--ACTGTCTG-GTCCCC-AACAACA-TCAGTAAGAACAATGAC-AAGCA  86

seq1  GAAATCTGGGTTTTAAGTTCTATGCCTGCCTCGTCTACATTTATTAGGCT  149
      |||||||||||||| ||||||||| |||||||||||||| ||||||||||
seq2  GAAATCTGGGTTTT-AGTTCTATG-CTGCCTCGTCTACA-TTATTAGGCT  133

seq1  GTCTTGAACTCAGGGATGATGGGGATGTACAGAGAGTAACACGGCAGAGA  199
      ||| || ||||||||||||| |||||||||||||||||||||||||||||
seq2  GTC-TGGACTCAGGGATGAT-GGGATGTACAGAGAGTAACACGGCAGAGA  181

seq1  AAATTGGCTCTGTTCCTAATTTTCACACTGAGTGGCCTCAGTCAAGTAGC  249
      ||  | ||||||||||||  ||||||||||||| ||||||||||||||||
seq2  AA--TTGCTCTGTTCCTA--TTTCACACTGAGT-GCCTCAGTCAAGTAGC  226

seq1  CTAAATTCTTTGCTTCTGTTTTATCCTATGGATTTGTGACAGATCATGAT  299
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  CTAAA-TCTTTGCTTCTG-TTTATCCTATGGATTTGTGACAGATCATGAT  274

seq1  GCTGTTAGACTTCATAGGCAATGACATAAGGCCTGAAACCACAAATTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAGACTTCATAGGCAATGACATAAGGCCTGAAACCACAAATTGCT  324

seq1  GTGTGGGTGTAAAAAAAGGGGGAGGAATTGCTAGAAAGGTGCTCAGAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTGTAAAAAAAGGGGGAGGAATTGCTAGAAAGGTGCTCAGAAGG  374

seq1  CAAAGATTTGGGTAAGGGTTATAGCAGTCATACTGGTAGTATAGCCTCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTTGGGTAAGGGTTATAGCAGTCATACTGGTAGTATAGCCTCAA  424

seq1  AAGTCTCCTGAAGCCTTTAATGGCGTGCACCAAGTCAGCTTTATAAAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCTGAAGCCTTTAATGGCGTGCACCAAGTCAGCTTTATAAAGGA  474

seq1  GCAAAGATCCCGGTTCACAGGCACATTGTGTCCCATGAATTCCATCTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATCCCGGTTCACAGGCACATTGTGTCCCATGAATTCCATCTCTT  524

seq1  TGTTCAAGATCCCAAAAGCTGAGAAGGTAAATGCCAACTCACAGGAATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAGATCCCAAAAGCTGAGAAGGTAAATGCCAACTCACAGGAATAA  574

seq1  TTTCCTCCTTGGGCTTTTCATACTGGCTAAACATGCCATGTCAGAAGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTTGGGCTTTTCATACTGGCTAAACATGCCATGTCAGAAGAGA  624

seq1  AATGGATGGAGCTAGAGAGGGGTGGTTATCATAGAAGCATAAGTAGCAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGGAGCTAGAGAGGGGTGGTTATCATAGAAGCATAAGTAGCAAT  674

seq1  AACATCCAACTGAGATGTAGTCTGTACTTAACCTGGTGCCTGGTGATCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCAACTGAGATGTAGTCTGTACTTAACCTGGTGCCTGGTGATCAG  724

seq1  CTACACACTTCACATTCATTTTAGTTTCAGCAAAAACTGTAGAGGTAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACTTCACATTCATTTTAGTTTCAGCAAAAACTGTAGAGGTAGAT  774

seq1  ACAGTGAACATTTCTCCTTATATGAGGAAACAACTCGGAAGAGGCTAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAACATTTCTCCTTATATGAGGAAACAACTCGGAAGAGGCTAAGC  824

seq1  AGTTCTCGCCACCTCACACGGTAAGTAGTAGCAACGTGGGCTCTAAGCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCGCCACCTCACACGGTAAGTAGTAGCAACGTGGGCTCTAAGCAA  874

seq1  ATCTTTTCACTTAAAATAACAGTGTAAATTCTGCATAGACTGGTAAGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCACTTAAAATAACAGTGTAAATTCTGCATAGACTGGTAAGAGC  924

seq1  TCCTCCGAGGGCTAGGGGTACAGCTCAGTGGTACATTTATCCTGAGCAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGAGGGCTAGGGGTACAGCTCAGTGGTACATTTATCCTGAGCAGT  974

seq1  TGAAGACTGGATTCAGTCCTCAACACTGTAAATAAATAAATCTTTGCAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTGGATTCAGTCCTCAACACTGTAAATAAATAAATCTTTGCAAA  1024

seq1  AGACATTTGTCTCCTTGTATTGAATTC  1076
      |||||||||||||||||||||||||||
seq2  AGACATTTGTCTCCTTGTATTGAATTC  1051