BAC Information

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BAC

Clone NameB6Ng01-032A12
Chromosome2 (Build37)
Map Location 72,564,025 - 72,719,843
singlet/doubletdoublet
Overlap gene6430710C18Rik
Upstream geneGm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032A12.bB6Ng01-032A12.g
ACCDH861481DH861482
length325957
definitionDH861481|Mus musculus domesticus DNA, BAC clone: B6Ng01-032A12, 5' end.DH861482|Mus musculus domesticus DNA, BAC clone: B6Ng01-032A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,719,519 - 72,719,843)(72,564,025 - 72,564,987)
sequence
gaattcctaaattactagtggattctctccttctatgctgcatgccatct
gtatgattcacacagtagttgttttatttgagggaggaggcctttgacac
agagtgtcttaaatgtcaaagcagggaaaacacctacatggtaagcattg
caaagttatgactgtcgtataaatggggtaaacatgtctcatttagtttg
ctaagcattcttccttctgagactatgttttgagaatggctggctgagta
atgatgcaaatagagttgcttttttggatggatgtatgtgtgcgtgtgtg
tatgtgtatatgtatgtatgtgtgt
gaattctcattttgttggatctttaaagtttttctttaaaaaaaagttta
agatgttgaattcacatgtgatccaattggcaaacacattcgtagtgact
tgaagtaatgttaaatctcagacataaacccctaaacatgcataccacgc
acacatcagtagatactcatatcataaacaccacagcagatattgcattg
ctctaagtaaagtatacaaaaatatccgattctattggcgtttggagtaa
acactcacacacattcttctacagatgacagagggtacattgatattctc
cccttttctggtacttgctgtggtacaaaacaaggcctttcctgtttatt
tgatagccagttcctcactggttgagttacgtctgccaagagctcaggag
agaattctggcgcacatatctcctcatcctttcctgagtggacagggaag
acgaatgccattcgagagtggcttccatgcacttctctgacataacccac
tgtctcctcttagtcatttgtgaggcaaaattaaccctcaggagtgcaga
accgatccacacagccagagggttagcaagcctgagcacctggtggtatg
cccagacctgaggactgtgcacagttctgattgcttttctgttgttcaca
agttgatttaacactccgtcaaagtgttcttttctcctgtgcccattttc
catgggagagaactgaggaagacagagcttaagagacgtggcctaagatt
ttgaagcttggggaacctcagctggtttcagagcctgagtgtgtcttgtt
gttgttgttgtaatttttaatttccttcaccaaaaagcatccggatggaa
gtcaatttgaaggactctcactaacaaaaacggaaaaggaaattatctcg
aaaaattacttacagccaggtgtgtgtgtggcagctcagacctgtatcta
acactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72719519_72719843
seq2: B6Ng01-032A12.b_36_360 (reverse)

seq1  ACACACATACATACATATACACATACACACACGCACACATACATCCATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACATACATATACACATACACACACGCACACATACATCCATCC  50

seq1  AAAAAAGCAACTCTATTTGCATCATTACTCAGCCAGCCATTCTCAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCAACTCTATTTGCATCATTACTCAGCCAGCCATTCTCAAAACA  100

seq1  TAGTCTCAGAAGGAAGAATGCTTAGCAAACTAAATGAGACATGTTTACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCAGAAGGAAGAATGCTTAGCAAACTAAATGAGACATGTTTACCC  150

seq1  CATTTATACGACAGTCATAACTTTGCAATGCTTACCATGTAGGTGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACGACAGTCATAACTTTGCAATGCTTACCATGTAGGTGTTTTC  200

seq1  CCTGCTTTGACATTTAAGACACTCTGTGTCAAAGGCCTCCTCCCTCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTGACATTTAAGACACTCTGTGTCAAAGGCCTCCTCCCTCAAAT  250

seq1  AAAACAACTACTGTGTGAATCATACAGATGGCATGCAGCATGGAAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAACAACTACTGTGTGAATCATACAGATGGCATGCAGCATAGAAGGAGA  300

seq1  GAATCCACTAGTAATTTAGGAATTC  325
      |||||||||||||||||||||||||
seq2  GAATCCACTAGTAATTTAGGAATTC  325

seq1: chr2_72564025_72564987
seq2: B6Ng01-032A12.g_59_1015

seq1  GAATTCTCA-TTGGTTGGATCTTTAAAGTTTTTCTTTAAAAAAAAGTTTA  49
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTTGTTGGATCTTTAAAGTTTTTCTTTAAAAAAAAGTTTA  50

seq1  AGATGTTGAATTCACATGTGATCCAATTGGCAAACACATTCGTAGTGACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTGAATTCACATGTGATCCAATTGGCAAACACATTCGTAGTGACT  100

seq1  TGAAGTAATGTTAAATCTCAGACATAAACCCCTAAACATGCATACCACGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAATGTTAAATCTCAGACATAAACCCCTAAACATGCATACCACGC  150

seq1  ACACATCAGTAGATACTCATATCATAAACACCACAGCAGATATTGCATTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCAGTAGATACTCATATCATAAACACCACAGCAGATATTGCATTG  200

seq1  CTCTAAGTAAAGTATACAAAAATATCCGATTCTATTGGCGTTTGGAGTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGTAAAGTATACAAAAATATCCGATTCTATTGGCGTTTGGAGTAA  250

seq1  ACACTCACACACATTCTTCTACAGATGACAGAGGGTACATTGATATTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACATTCTTCTACAGATGACAGAGGGTACATTGATATTCTC  300

seq1  CCCTTTTCTGGTACTTGCTGTGGTACAAAACAAGGCCTTTCCTGTTTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCTGGTACTTGCTGTGGTACAAAACAAGGCCTTTCCTGTTTATT  350

seq1  TGATAGCCAGTTCCTCACTGGTTGAGTTACGTCTGCCAAGAGCTCAGGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCCAGTTCCTCACTGGTTGAGTTACGTCTGCCAAGAGCTCAGGAG  400

seq1  AGAATTCTGGCGCACATATCTCCTCATCCTTTCCTGAGTGGACAGGGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTGGCGCACATATCTCCTCATCCTTTCCTGAGTGGACAGGGAAG  450

seq1  ACGAATGCCATTCGAGAGTGGCTTCCATGCACTTCTCTGACATAACCCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATGCCATTCGAGAGTGGCTTCCATGCACTTCTCTGACATAACCCAC  500

seq1  TGTCTCCTCTTAGTCATTTGTGAGGCAAAATTAACCCTCAGGAGTGCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTCTTAGTCATTTGTGAGGCAAAATTAACCCTCAGGAGTGCAGA  550

seq1  ACCGATCCACACAGCCAGAGGGTTAGCAAGCCTGAGCACCTGGTGGTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATCCACACAGCCAGAGGGTTAGCAAGCCTGAGCACCTGGTGGTATG  600

seq1  CCCAGACCTGAGGACTGTGCACAGTTCTGATTGCTTTTCTGTTGTTCACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACCTGAGGACTGTGCACAGTTCTGATTGCTTTTCTGTTGTTCACA  650

seq1  AGTTGATTTAACACTCCGTCAAAGTGTTCTTTTCTCCTGTGCCCATTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTTAACACTCCGTCAAAGTGTTCTTTTCTCCTGTGCCCATTTTC  700

seq1  CATGGGAGAGAACTGAGGAAGACAGAGCTTAAGAGACGTGGCCTAAGA-T  748
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGGGAGAGAACTGAGGAAGACAGAGCTTAAGAGACGTGGCCTAAGATT  750

seq1  TTGAAGCTT-GGGAACCTCAGCTGGTTTCAGAGCCTGAGTGTGTCTTGTT  797
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTTGGGGAACCTCAGCTGGTTTCAGAGCCTGAGTGTGTCTTGTT  800

seq1  GTTGTTGTTGTAA-TTTTAATTTCCTTCACCAAAAAGCATCCGGCATGGA  846
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  GTTGTTGTTGTAATTTTTAATTTCCTTCACCAAAAAGCATCCGG-ATGGA  849

seq1  AGTCAATTTGAAAGGACTCTCACTAACAAAAACGGAAAAAGAAAAATCTA  896
      |||||||||| |||||||||||||||||||||||||||| ||||    ||
seq2  AGTCAATTTG-AAGGACTCTCACTAACAAAAACGGAAAAGGAAA---TTA  895

seq1  TCATCGAAGAAATTACATCACAGCCAGGTATGGTGTGT-GCAGCTCAGAC  945
      || ||||| ||||||| | |||||||||| | |||||| |||||||||||
seq2  TC-TCGAA-AAATTAC-TTACAGCCAGGTGT-GTGTGTGGCAGCTCAGAC  941

seq1  CTGTAATCCTAACACTCA  963
      |||||   ||||||||||
seq2  CTGTA--TCTAACACTCA  957