BAC Information

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BAC

Clone NameB6Ng01-032F04
Chromosome2 (Build37)
Map Location 6,082,993 - 6,206,418
singlet/doubletdoublet
Overlap geneLOC634939, Echdc3
Upstream geneCcdc3, LOC100040292, Camk1d, LOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik
Downstream gene1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032F04.bB6Ng01-032F04.g
ACCDH861695DH861696
length1,148170
definitionDH861695|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F04, 5' end.DH861696|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,205,259 - 6,206,418)(6,082,993 - 6,083,162)
sequence
gaattctgccgcaaacaatcaacaagctcaaaagaacaaacatcagttct
tttgctaaaggaagaaagtaaaatattaaaataagaccaaaatgtggaca
gtgtttgagaggaggcagaagaggagaaaataactactttaacctccatt
gactgtgaaccaaagatgatccctccaagctgatcataaatttacaaaaa
gagacatgattgtgactaataatggggagagtttgtctgtttttgaccat
ttgaggatatgtaagtgaatttaatacaaatactgtctagggtcacagcg
catgccaactctttgatacacagtaacttaaagtgacttttgataagatg
atgcttaaagtctgagctatctgataggcagctcctatccttggctcagt
ctgtcgcccagcccactccttcctcttctacccacttactaagcactttc
taagcacttactgacctcatctcccagggttttcagctgtgctgcttatt
ccagtctggctaaacatctacaactgctcacagcggctctgactgtcacc
aatgccagaagcagtcatggacttttttgctacatggcctcatttcttca
ctgttacatttgtctctgtgaggcatgaggaagctaaccgataaaacaga
tttccagggcctgggtgacagggagatcaatcaaacctagagctgtgtgg
ctcctatgctcagtcttcttatcacccaccctttcttgatgagctcagtg
tgaacagttaggaaagtacacttgtgtgagtgtgtatatttgcacatatg
tgtgtatatgtgttcatgcctgcatgtggaagccagattgggacatcaag
aatgcatctctatcaatccccacctcactcccttgagacagtttctctgt
tgtagaaattatttaaatcctggcctgaggttttaccctacctttgacct
tttagttctggatgaaagacccacccatctttatatgtaatataaatata
catgtaaataaaagccttaacaacacgagagctgggagaaactactctct
gttatagatctacttcctattgacaaccccaagttatcacttactacgta
catatgttcatctggctttcttacttcaattgccagcccaagggacgt
tccacatagaacagcccgacctagaactcacagagatccatttgcctctg
ccaccagagtgctgggatctaaggtatgtgccactttgcccagcttccaa
cataatattctggggttgttcaagaacttaaattccaaatgttcagattg
attttgaggtttttattccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6205259_6206418
seq2: B6Ng01-032F04.b_46_1193 (reverse)

seq1  ACGTCCCTGTGGGCTGGCCAATTGAAGTTAAGAACAGCCCAGATGAAACA  50
      |||||||| |||||||| ||||||||| |||||| || ||||||| ||||
seq2  ACGTCCCT-TGGGCTGG-CAATTGAAG-TAAGAA-AG-CCAGATG-AACA  44

seq1  TA-GTACGTAGTAAGTGATAACTTGGGGTTGTCAATAGGAAAGTAGATTC  99
      || |||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  TATGTACGTAGTAAGTGATAACTTGGGGTTGTCAATAGG-AAGTAGA-TC  92

seq1  TAATAACAGAGAGTAGTATCTCCCAGCTCTCGTGTTGTTTAAGGCTTTTA  149
      | ||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  T-ATAACAGAGAGTAGTTTCTCCCAGCTCTCGTGTTG-TTAAGGCTTTTA  140

seq1  TTTACATGTATATTTATATTTACATATAAAGATTGTGTGTGTCTTTCATC  199
      |||||||||||||||||| ||||||||||||| || ||| ||||||||||
seq2  TTTACATGTATATTTATA-TTACATATAAAGA-TGGGTGGGTCTTTCATC  188

seq1  CAGAACTAAAAGGTCAAAGGTAGGGTAAAAACCTCAGGCCAGGATTTAAA  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGAACTAAAAGGTCAAAGGTAGGGT-AAAACCTCAGGCCAGGATTTAAA  237

seq1  TAATTTCTACAACAGAGAAACTGTCTCAAGGGAGTGAGGTGGGGATTGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTACAACAGAGAAACTGTCTCAAGGGAGTGAGGTGGGGATTGAT  287

seq1  AGAGATGCATTCTTGATGTCCCAATCTGGCTTCCACATGCAGGCATGAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCATTCTTGATGTCCCAATCTGGCTTCCACATGCAGGCATGAAC  337

seq1  ACATATACACACATATGTGCAAATATACACACTCACACAAGTGTACTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACACACATATGTGCAAATATACACACTCACACAAGTGTACTTTC  387

seq1  CTAACTGTTCACACTGAGCTCATCAAGAAAGGGTGGGTGATAAGAAGACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTTCACACTGAGCTCATCAAGAAAGGGTGGGTGATAAGAAGACT  437

seq1  GAGCATAGGAGCCACACAGCTCTAGGTTTGATTGATCTCCCTGTCACCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAGGAGCCACACAGCTCTAGGTTTGATTGATCTCCCTGTCACCCA  487

seq1  GGCCCTGGAAATCTGTTTTATCGGTTAGCTTCCTCATGCCTCACAGAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGAAATCTGTTTTATCGGTTAGCTTCCTCATGCCTCACAGAGAC  537

seq1  AAATGTAACAGTGAAGAAATGAGGCCATGTAGCAAAAAAGTCCATGACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAACAGTGAAGAAATGAGGCCATGTAGCAAAAAAGTCCATGACTG  587

seq1  CTTCTGGCATTGGTGACAGTCAGAGCCGCTGTGAGCAGTTGTAGATGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCATTGGTGACAGTCAGAGCCGCTGTGAGCAGTTGTAGATGTTT  637

seq1  AGCCAGACTGGAATAAGCAGCACAGCTGAAAACCCTGGGAGATGAGGTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGACTGGAATAAGCAGCACAGCTGAAAACCCTGGGAGATGAGGTCA  687

seq1  GTAAGTGCTTAGAAAGTGCTTAGTAAGTGGGTAGAAGAGGAAGGAGTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGCTTAGAAAGTGCTTAGTAAGTGGGTAGAAGAGGAAGGAGTGGG  737

seq1  CTGGGCGACAGACTGAGCCAAGGATAGGAGCTGCCTATCAGATAGCTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCGACAGACTGAGCCAAGGATAGGAGCTGCCTATCAGATAGCTCAG  787

seq1  ACTTTAAGCATCATCTTATCAAAAGTCACTTTAAGTTACTGTGTATCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAGCATCATCTTATCAAAAGTCACTTTAAGTTACTGTGTATCAAA  837

seq1  GAGTTGGCATGCGCTGTGACCCTAGACAGTATTTGTATTAAATTCACTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGCATGCGCTGTGACCCTAGACAGTATTTGTATTAAATTCACTTA  887

seq1  CATATCCTCAAATGGTCAAAAACAGACAAACTCTCCCCATTATTAGTCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCTCAAATGGTCAAAAACAGACAAACTCTCCCCATTATTAGTCAC  937

seq1  AATCATGTCTCTTTTTGTAAATTTATGATCAGCTTGGAGGGATCATCTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTCTCTTTTTGTAAATTTATGATCAGCTTGGAGGGATCATCTTT  987

seq1  GGTTCACAGTCAATGGAGGTTAAAGTAGTTATTTTCTCCTCTTCTGCCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACAGTCAATGGAGGTTAAAGTAGTTATTTTCTCCTCTTCTGCCTC  1037

seq1  CTCTCAAACACTGTCCACATTTTGGTCTTATTTTAATATTTTACTTTCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAACACTGTCCACATTTTGGTCTTATTTTAATATTTTACTTTCTT  1087

seq1  CCTTTAGCAAAAGAACTGATGTTTGTTCTTTTGAGCTTGTTGATTGTTTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCAAAAGAACTGATGTTTGTTCTTTTGAGCTTGTTGATTGTTTG  1137

seq1  CGGCAGAATTC  1160
      |||||||||||
seq2  CGGCAGAATTC  1148

seq1: chr2_6082993_6083162
seq2: B6Ng01-032F04.g_73_242

seq1  TCCACATAGAACAGCCCGACCTAGAACTCACAGAGATCCATTTGCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATAGAACAGCCCGACCTAGAACTCACAGAGATCCATTTGCCTCTG  50

seq1  CCACCAGAGTGCTGGGATCTAAGGTATGTGCCACTTTGCCCAGCTTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGAGTGCTGGGATCTAAGGTATGTGCCACTTTGCCCAGCTTCCAA  100

seq1  CATAATATTCTGGGGTTGTTCAAGAACTTAAATTCCAAATGTTCAGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTCTGGGGTTGTTCAAGAACTTAAATTCCAAATGTTCAGATTG  150

seq1  ATTTTGAGGTTTTTATTCCC  170
      ||||||||||||||||||||
seq2  ATTTTGAGGTTTTTATTCCC  170