BAC Information

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BAC

Clone NameB6Ng01-032F08
Chromosome2 (Build37)
Map Location 16,370,082 - 16,412,168
singlet/doubletdoublet
Overlap genePlxdc2
Upstream geneLOC227588, LOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032F08.bB6Ng01-032F08.g
ACCDH861703DH861704
length1,0681,042
definitionDH861703|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F08, 5' end.DH861704|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,370,082 - 16,371,168)(16,411,116 - 16,412,168)
sequence
gaattcataaaaatagttgatgctttcctgtactatagtgttagaatcag
gcttctgaagatagtgtacttatggagtaagtggatcattaaaacatctt
ctttaaaaaaacaaatatttcctgaaaggacatatataagattggtggtg
ctcttagtggcagaacacaagctaacggccactgtgacatagtgaagaag
caaagccatgtccacaggatgccgtagcatttgggagtacagaggcttta
ttgtatcaagttggatgtgcttcacagtgtctggacattctgtgagatgc
ttctctagggacaatctggtcagctatgaaatgcatttgatgcattggga
cagcaaatgaaaaatttcatgttactagtgtaaacttaaaatactaaagt
ggcccattattaaatataatgttatttgcatcattcagtgtatatacaag
ctaaaaaaagacatcaagcataactatataaaggatcctaattacttgta
acagtgtcctttgaaaactctttttttaatcaatgtagtatataaaattc
ttatccgaacagtggaaatgaaagtccatctaaggagacactttggcatt
aattggcatagcttttacacttagagtgttctgctcattttcatttgcac
aaaacccttattaagaaaggacattatcttgcatgtaggcacttgctaaa
agaatgcagcttgctgacagagaatattttaaactgacactctcaccgtg
agcctgttttaaaaacatctgctgtttgggagaattagaactggctaata
acagtgactataattaatagtctattgctttaagggaaacaattaacaaa
ttgggctgaatattaatctactcaactaataaacagaaacaaaggaattc
agagaacagacaaagaaagtagtatgtgttttctccatgagtcttttgtt
ttttgtttttttttattatttcggagccaggattcctctgtatagcttgg
ctgcctgaatcacttttgtagaacaggctggccccaaactcagatcgcct
gcatgcctccagtgctgg
gaattctcaggtcttaaagaatatcagacaatagaacatctcctttgact
ggaaatatttccacataacactttattatgaatgatgaagaaaattaaaa
tccagactcatttaactgattatggtttctaactagaattccaatttttt
acttatggaccaaaagagcctatgctttgcttaccatgaaaaggtaatga
gactttaacaaatatatcatatcatttatacaattttattttatttcttt
ctgaattttggttagccactgtatgtagacagtgtttttaaatgttttgt
tttgtgggtgtagaaaattagctggaggacattaattagctcagattctt
aaattgatcaattaaatgctaccgactttccctttattgtgttaaataaa
aattcaggtggctgatgtcttccctctgttacaacagcttaactctgtcc
ctgcgaatgctcttccttaatcatttcattctcgtcactgttgttagaca
catcttggaaatgtgacctgaccaacatctttcagagaataagtgtggag
actgattctagtaatcaagaaaataacaatttatgtttacgtgcagcatt
caaaccttgtagctagaaaggattgcttcccaatactttgtgcaattagt
gaagaatcctccctcagtgtctccttcacatcactccttgtacttagcac
gtctcccttcaactgctccttaggtcccaggtcaggatgcccaggttgat
tacacattcataaagtcttttatctccttgtctttgcaattaacattctg
acttacatccatgtaatcaaatcgaccctgactttttgggtgagctgagt
caacttgttatgatctcagtataagacacacgacgatataaaatctaaat
attgtatgtcaggatatgggtaagtgagaaagatttgacagcaagagtcc
aaacaactttggatcaccctaattacccttagctgtgaaactccagagca
ttctttctcacttttcttatcctatactttcagattcataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16370082_16371168
seq2: B6Ng01-032F08.b_45_1112

seq1  GAATTCATAAAAATAGTTGATGCTTTCCTGTACTATAGTGTTAGAATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAAATAGTTGATGCTTTCCTGTACTATAGTGTTAGAATCAG  50

seq1  GCTTCTGAAGATAGTGTACTTATGGAGTAAGTGGATCATTAAAACATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGAAGATAGTGTACTTATGGAGTAAGTGGATCATTAAAACATCTT  100

seq1  CTTTAAAAAAACAAATATTTCCTGAAAGGACATATATAAGATTGGTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAAACAAATATTTCCTGAAAGGACATATATAAGATTGGTGGTG  150

seq1  CTCTTAGTGGCAGAACACAAGCTAACGGCCACTGTGACATAGTGAAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGTGGCAGAACACAAGCTAACGGCCACTGTGACATAGTGAAGAAG  200

seq1  CAAAGCCATGTCCACAGGATGCCGTAGCATTTGGGAGTACAGAGGCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATGTCCACAGGATGCCGTAGCATTTGGGAGTACAGAGGCTTTA  250

seq1  TTGTATCAAGTTGGATGTGCTTCACAGTGTCTGGACATTCTGTGAGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCAAGTTGGATGTGCTTCACAGTGTCTGGACATTCTGTGAGATGC  300

seq1  TTCTCTAGGGACAATCTGGTCAGCTATGAAATGCATTTGATGCATTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGGGACAATCTGGTCAGCTATGAAATGCATTTGATGCATTGGGA  350

seq1  CAGCAAATGAAAAATTTCATGTTACTAGTGTAAACTTAAAATACTAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATGAAAAATTTCATGTTACTAGTGTAAACTTAAAATACTAAAGT  400

seq1  GGCCCATTATTAAATATAATGTTATTTGCATCATTCAGTGTATATACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATTATTAAATATAATGTTATTTGCATCATTCAGTGTATATACAAG  450

seq1  CTAAAAAAAGACATCAAGCATAACTATATAAAGGATCCTAATTACTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAAGACATCAAGCATAACTATATAAAGGATCCTAATTACTTGTA  500

seq1  ACAGTGTCCTTTGAAAACTCTTTTTTTAATCAATGTAGTATATAAAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCCTTTGAAAACTCTTTTTTTAATCAATGTAGTATATAAAATTC  550

seq1  TTATCCGAACAGTGGAAATGAAAGTCCATCTAAGGAGACACTTTGGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCGAACAGTGGAAATGAAAGTCCATCTAAGGAGACACTTTGGCATT  600

seq1  AATTGGCATAGCTTTTACACTTAGAGTGTTCTGCTCATTTTCATTTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCATAGCTTTTACACTTAGAGTGTTCTGCTCATTTTCATTTGCAC  650

seq1  AAAACCCTTATTAAGAAAGGACATTATCTTGCATGTAGGCACTTGCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTTATTAAGAAAGGACATTATCTTGCATGTAGGCACTTGCTAAA  700

seq1  AGAATGCAGCTTGCTGACAGAGAATATTTTAAACTGACACTCTCACCGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCAGCTTGCTGACAGAGAATATTTTAAACTGACACTCTCACCGTG  750

seq1  AGCCTGTTTTAAAAACATCTGCTGTTTGGGAGAATTAGAACTGGCTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTTTAAAAACATCTGCTGTTTGGGAGAATTAGAACTGGCTAATA  800

seq1  ACAGTGACTATAATTAATAGTCTATTGCTTTAAGGGAAACAATTAACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACTATAATTAATAGTCTATTGCTTTAAGGGAAACAATTAACAAA  850

seq1  TTGGGCTGAATATTAATCTACTCAACTAATAAACAAGAAACAAAAGGAAT  900
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  TTGGGCTGAATATTAATCTACTCAACTAATAAAC-AGAAAC-AAAGGAAT  898

seq1  TCAGAGAACAGACAAAGAAAGTAGTATGTGTTTTCTCCATGAGTCTTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAACAGACAAAGAAAGTAGTATGTGTTTTCTCCATGAGTCTTTTG  948

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGACAGGATTTCTCTGTA  1000
            |||||| ||||||||| || |||  ||| ||||||| |||||||
seq2  ------TTTTTTGTTTTTTTTTATTATTTCGGAGCCAGGATTCCTCTGTA  992

seq1  TAGCTCTGGCTGCCCTGGAATTCAC-TTTGTAGACCAGGCTGGCCCTCAA  1049
      ||||| |||||| ||||  | |||| |||||||| ||||||||||| |||
seq2  TAGCT-TGGCTG-CCTG--AATCACTTTTGTAGAACAGGCTGGCCC-CAA  1037

seq1  ACTCAGAAATCCGCCTGCCTTTGCCTCCCAAGTGCTGG  1087
      |||||||    |||||||   |||||||  ||||||||
seq2  ACTCAGA---TCGCCTGC--ATGCCTCC--AGTGCTGG  1068

seq1: chr2_16411116_16412168
seq2: B6Ng01-032F08.g_68_1108 (reverse)

seq1  TTATGATAATCTAGAAAGTATAGGATAAAGAAAAGTGAAGAAAAGAAATG  50
      |||||  ||||| ||||||||||||| |||||||||| |||||   ||||
seq2  TTATG--AATCT-GAAAGTATAGGAT-AAGAAAAGTG-AGAAA--GAATG  43

seq1  CTCTGGGAGTTTTCACAGCTAAGGGTTAATTAGGGTGATCCAATGTTGTT  100
      |||| |||| ||||||||||||||| ||||||||||||||||| ||||||
seq2  CTCT-GGAG-TTTCACAGCTAAGGG-TAATTAGGGTGATCCAAAGTTGTT  90

seq1  CTGGACTCTTGCTTGTCACATCTTTCTCACTTACCCATATCCTGACATAC  150
       ||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  -TGGACTCTTGC-TGTCAAATCTTTCTCACTTACCCATATCCTGACATAC  138

seq1  ATTATTTAGATTTTATATCGTCGTGTGTCTTATACTGAGATCATAACAAG  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAGATTTTATATCGTCGTGTGTCTTATACTGAGATCATAACAAG  188

seq1  TTGACTCAGCTCACCCAAAAAGTCAGGGTCGATTTGATTACATGGATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCAGCTCACCCAAAAAGTCAGGGTCGATTTGATTACATGGATGTA  238

seq1  AGTCAGAATGTTAATTGCAAAGACAAGGAGATAAAAGACTTTATGAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAATGTTAATTGCAAAGACAAGGAGATAAAAGACTTTATGAATGT  288

seq1  GTAATCAACCTGGGCATCCTGACCTGGGACCTAAGGAGCAGTTGAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAACCTGGGCATCCTGACCTGGGACCTAAGGAGCAGTTGAAGGGA  338

seq1  GACGTGCTAAGTACAAGGAGTGATGTGAAGGAGACACTGAGGGAGGATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGCTAAGTACAAGGAGTGATGTGAAGGAGACACTGAGGGAGGATTC  388

seq1  TTCACTAATTGCACAAAGTATTGGGAAGCAATCCTTTCTAGCTACAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAATTGCACAAAGTATTGGGAAGCAATCCTTTCTAGCTACAAGGT  438

seq1  TTGAATGCTGCACGTAAACATAAATTGTTATTTTCTTGATTACTAGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGCTGCACGTAAACATAAATTGTTATTTTCTTGATTACTAGAATC  488

seq1  AGTCTCCACACTTATTCTCTGAAAGATGTTGGTCAGGTCACATTTCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCACACTTATTCTCTGAAAGATGTTGGTCAGGTCACATTTCCAAG  538

seq1  ATGTGTCTAACAACAGTGACGAGAATGAAATGATTAAGGAAGAGCATTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTAACAACAGTGACGAGAATGAAATGATTAAGGAAGAGCATTCG  588

seq1  CAGGGACAGAGTTAAGCTGTTGTAACAGAGGGAAGACATCAGCCACCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGAGTTAAGCTGTTGTAACAGAGGGAAGACATCAGCCACCTGA  638

seq1  ATTTTTATTTAACACAATAAAGGGAAAGTCGGTAGCATTTAATTGATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTAACACAATAAAGGGAAAGTCGGTAGCATTTAATTGATCAA  688

seq1  TTTAAGAATCTGAGCTAATTAATGTCCTCCAGCTAATTTTCTACACCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAATCTGAGCTAATTAATGTCCTCCAGCTAATTTTCTACACCCAC  738

seq1  AAAACAAAACATTTAAAAACACTGTCTACATACAGTGGCTAACCAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACATTTAAAAACACTGTCTACATACAGTGGCTAACCAAAATT  788

seq1  CAGAAAGAAATAAAATAAAATTGTATAAATGATATGATATATTTGTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAATAAAATAAAATTGTATAAATGATATGATATATTTGTTAAA  838

seq1  GTCTCATTACCTTTTCATGGTAAGCAAAGCATAGGCTCTTTTGGTCCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATTACCTTTTCATGGTAAGCAAAGCATAGGCTCTTTTGGTCCATA  888

seq1  AGTAAAAAATTGGAATTCTAGTTAGAAACCATAATCAGTTAAATGAGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAATTGGAATTCTAGTTAGAAACCATAATCAGTTAAATGAGTCT  938

seq1  GGATTTTAATTTTCTTCATCATTCATAATAAAGTGTTATGTGGAAATATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTAATTTTCTTCATCATTCATAATAAAGTGTTATGTGGAAATATT  988

seq1  TCCAGTCAAAGGAGATGTTCTATTGTCTGATATTCTTTAAGACCTGAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCAAAGGAGATGTTCTATTGTCTGATATTCTTTAAGACCTGAGAA  1038

seq1  TTC  1053
      |||
seq2  TTC  1041