BAC Information

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BAC

Clone NameB6Ng01-033A23
Chromosome2 (Build37)
Map Location 6,682,393 - 6,683,360
singlet/doubletsinglet
Overlap geneCugbp2
Upstream geneCdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387
Downstream geneLOC100040659, LOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033A23.bB6Ng01-033A23.g
ACCDH862218DH862219
length1,098964
definitionDH862218|Mus musculus domesticus DNA, BAC clone: B6Ng01-033A23, 5' end.DH862219|Mus musculus domesticus DNA, BAC clone: B6Ng01-033A23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgggctaaagccacatggccctggaattttgggttagtagactt
ttaattactgcttctattccatcaggggttacagttctgtttaaatgact
tatctgatcttgatttaactttgataactggtatgtgtctaggaaattat
ctactattttagattttacaatttgatggagtataggtttttaaagtaca
tctttatgattctctggatttctttggtatcttttatgtctcccctttaa
tttctaattttgttaatttagattttctctctctgctttttaattaattt
ggatgagggtttgtcaatgttactgatttttctcagagaaataactcttt
atttcattgatttttgtattgttgtgttaatgatttcagtcctaagtttg
tttttttgccatctactccttttggatgtaatttcttctttttgttccag
aacttataagtacgctgttaaattaatagtatgagttctctccacatttt
tatatagggatttagagctatgaacttgccttttagaactaccttcattg
tatcccataagtttggtgtgttgtatgaagtctttaatttcttttttttt
cttattacatattttcctcaattacatttccaatgctatcccaaaagtcc
cccccccccactcccctacccacccattcccatttttttggccctggcgt
tcccctgtactggggcatataaagtttgcctgtacaatgggcctctcttt
ccagtgatggccgactaggccatcttttgatacatatgtagctagagtca
agagctccggggtactggttagttcataatgttgcacctacagggttgca
gatctctttagctccttgtatactttctctagctcctccattgggggccc
tgtgatccatccaatagttgactgtgagcatccacctctgtgtttgctag
gcccggcctagtcttcacaagaagacagctacatcacggtccttgcatca
acgcttgctagtgtatgcaatgacccatttaaaaagatatcgtagtgagt
gttcattttggatttcaactttctgtggttctcgcgttgaacccagac
gaattctctcataacctggagagctggcactggatatatcctcacatcaa
gttcttgtcataaaaaaagggaaaagtctgagacaggaaaattgatatat
gaagaactaatgatgttgaacaactgttttcaaacataaaaactcatcac
actacataaaatggtgaattctactttagccaagtcagaatttgttaaac
aaaaggcagtaaggattcaaacctaaacacacctgattcttttttaaata
gtaatttttaatagtatgtatgtgtgtatgtttgagtctgtgttagttat
gccatgagagtgttggcacctctggaggccaaagttatttggaggcagga
ttgattgcaggtggtggtgagccacaggaagtagtaactcaggaagtagg
actcaggctttccaagaacaggctgtgctcttacctgctgagctatcttt
ctaaccccaacatactcagcccttgattttatactctactctctttggtc
actgtggatacgtccaaaggtattttcatgtatattcgcactctgcattc
ttatgtgaaaagctaatttattttttatctgttttgggggagaaagatag
tttttcaaagtaaagtattttaaatactctagaactatcattaaaaagga
aataaaaatttatagtataaacatgtaatttgtgaataagtcaattctct
ttgaattaagaggataagcaattaataagtagataaatttgattgtttag
catatattttctattaaattttttggttgttttacacagagaaattttac
ttatatgcattcataggaaatctatgtctacttacatgaatctggaaatc
ttctacatcttcagacatagctctaaaaagtactatttcttagcagaggg
tcatagtaaataaactggacttctagaaaacaggtttataagtctgttca
ctgactgcttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6682393_6683360
seq2: B6Ng01-033A23.g_64_1027

seq1  GAATTCTCTCATAACCTGGAGAGCTGGCACTGGATATATCCTCACATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCATAACCTGGAGAGCTGGCACTGGATATATCCTCACATCAA  50

seq1  GTTCTTGTCATAAAAAAAGGGAAAAGTCTGAGACAGGAAAATTGATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTCATAAAAAAAGGGAAAAGTCTGAGACAGGAAAATTGATATAT  100

seq1  GAAGAACTAATGATGTTGAACAACTGTTTTCAAACATAAAAACTCATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTAATGATGTTGAACAACTGTTTTCAAACATAAAAACTCATCAC  150

seq1  ACTACATAAAATGGTGAATTCTACTTTAGCCAAGTCAGAATTTGTTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATAAAATGGTGAATTCTACTTTAGCCAAGTCAGAATTTGTTAAAC  200

seq1  AAAAGGCAGTAAGGATTCAAACCTAAACACACCTGATTCTTTTTTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAGTAAGGATTCAAACCTAAACACACCTGATTCTTTTTTAAATA  250

seq1  GTAATTTTTAATAGTATGTATGTGTGTATGTTTGAGTCTGTGTTAGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTTAATAGTATGTATGTGTGTATGTTTGAGTCTGTGTTAGTTAT  300

seq1  GCCATGAGAGTGTTGGCACCTCTGGAGGCCAAAGTTATTTGGAGGCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGAGTGTTGGCACCTCTGGAGGCCAAAGTTATTTGGAGGCAGGA  350

seq1  TTGATTGCAGGTGGTGGTGAGCCACAGGAAGTAGTAACTCAGGAAGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCAGGTGGTGGTGAGCCACAGGAAGTAGTAACTCAGGAAGTAGG  400

seq1  ACTCAGGCTTTCCAAGAACAGGCTGTGCTCTTACCTGCTGAGCTATCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGCTTTCCAAGAACAGGCTGTGCTCTTACCTGCTGAGCTATCTTT  450

seq1  CTAACCCCAACATACTCAGCCCTTGATTTTATACTCTACTCTCTTTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCCAACATACTCAGCCCTTGATTTTATACTCTACTCTCTTTGGTC  500

seq1  ACTGTGGATACGTCCAAAGGTATTTTCATGTATATTCGCACTCTGCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGATACGTCCAAAGGTATTTTCATGTATATTCGCACTCTGCATTC  550

seq1  TTATGTGAAAAGCTAATTTATTTTTTATCTGTTTTGGGGGAGAAAGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGAAAAGCTAATTTATTTTTTATCTGTTTTGGGGGAGAAAGATAG  600

seq1  TTTTTCAAAGTAAAGTATTTTAAATACTCTAGAACTATCATTAAAAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAAGTAAAGTATTTTAAATACTCTAGAACTATCATTAAAAAGGA  650

seq1  AATAAAAATTTATAGTATAAACATGTAATTTGTGAATAAGTCAATTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATTTATAGTATAAACATGTAATTTGTGAATAAGTCAATTCTCT  700

seq1  TTGAATTAAGAGGATAAGCAATTAATAAGTAGATAAATTTGATTGTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAAGAGGATAAGCAATTAATAAGTAGATAAATTTGATTGTTTAG  750

seq1  CATATA-TTTCTATTAAATTTTTTGGTTG-TTTACACAGAGAAATTTTAC  798
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  CATATATTTTCTATTAAATTTTTTGGTTGTTTTACACAGAGAAATTTTAC  800

seq1  TTATATGCATTCATAGGAAATCTATGTCTACTTACATGAATCTGGAAATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCATTCATAGGAAATCTATGTCTACTTACATGAATCTGGAAATC  850

seq1  TTCTACATCTTCAGACATAGCTCTAAAAAGTACTATTTCTTAGCAAGAGG  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTACATCTTCAGACATAGCTCTAAAAAGTACTATTTCTTAGC-AGAGG  899

seq1  GTCATAGTAAAATAAAACTTGACTTCTAGAAAACAGGCTTATTAAGTCTG  948
      |||||||||||   ||||| ||||||||||||||||| ||| ||||||||
seq2  GTCATAGTAAA--TAAACTGGACTTCTAGAAAACAGGTTTA-TAAGTCTG  946

seq1  TTCAACTGACTGCTTTATTT  968
      ||| ||||||||| ||||||
seq2  TTC-ACTGACTGC-TTATTT  964