BAC Information

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BAC

Clone NameB6Ng01-033G19
Chromosome2 (Build37)
Map Location 111,408,160 - 111,522,086
singlet/doubletdoublet
Overlap geneLOC668822, Olfr1297, Olfr1298, Olfr1299
Upstream geneSlc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295
Downstream geneOlfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033G19.bB6Ng01-033G19.g
ACCDH862475DH862476
length7651,025
definitionDH862475|Mus musculus domesticus DNA, BAC clone: B6Ng01-033G19, 5' end.DH862476|Mus musculus domesticus DNA, BAC clone: B6Ng01-033G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,408,160 - 111,408,923)(111,521,046 - 111,522,086)
sequence
gaattcactccttatactatagtttacagtgttggttataggaaatgagt
ctgttcaaatgagctctgtgtaatatatagttataaaaacagactatata
tatatatatgtgtatatatatatatatatatatatcatttacatgtatga
caatatatgtcatacatatgttaacacaaatatttgctataaagatgatg
tttgtttgtgtgaattttctttaaaatacttactacttatacttttctta
agttcctatatacctgttcagtaactatgagatatgctgctgtgaaaggc
atatttgaggtgcatattgattgttaggaacataataatcactttgtcct
tctcttctcttgcccaggcgctctcagtattttactagacataataaaaa
actataatctattaaagtgctctgtaatttttgcctttacctaagtgtta
attccaattttggttttatattaacagatattaatgaagggaaacaaact
gaattatctggtttgcagtctacaaacaattttcttttatgtgtaatttt
ttctatatttattggtcttttatcaaagtgccaaacaagatacgaatcta
agtattaatatttaggtacttgtggatgtagccatatttaccaaacttag
tagataccaagtgatagatacttatgacttataaagtgatgtttttggta
gcttctaatgaactactttgccagaagattagttgttgttgggggttgtg
actgttttgtttgta
gaattcctcaccttaaaatataaataggaatggtttttccacacaggaat
gccatcaagtagttcttacatgtttttaataacttgtacttaaaatttgg
gggcatattcacatttcaattcataaataaaatatttaagtaatatccac
gtgagtactaccatatatgcctgaaattgttcatttgcccaatgactaaa
atcatcactttgtcttagctagattccaagtaccacttttgtgaataaaa
aacaattatgaagcaaagagataagcttcacaaaaactagcagtgaattt
actttctgttattttaaaaaacaggtgaataatatataaaattgtatgaa
taaagaatggttatatttcaaaattatctcaatttagcacttaaacttat
cctgtaaattattatttaatattgtataatatcctgaaatttaatttcca
caaggacagtatccattgattatctaattattaaaactattgtatttaat
ttagtaattaaacacattaggcatttaacaaacatatttgtaagtacaaa
tatgttgctggtggccagcgaggcttcagaagtgtctaaaacaacccaga
ctgttgcctttgcccttgtttgtccaccatatatatgtggaaaaaccttg
ttgattaaaaaagaaacaaaacttttatcgtcaggagacagagcaatcaa
tttcaagttgactgggggtgctttttcccagtctataggattcatggtgc
taaaagttgctcagggcactgtcagaaaaaaagacttcaatggccttttt
caactctagatcagttatggtaaaatagaatcctatctggcaagatgtgt
ccactactatagtatgactgttgtctgatggagaaaccaacaatttttga
tgccttttcacaggatagatttatgcctagtgctataaaattggttaaac
ccaaagcattcacacagttactcttgtagattttgcattatttatttatt
cactgagtgtcttttttttttaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_111408160_111408923
seq2: B6Ng01-033G19.b_44_808

seq1  GAATTCACTCCTTATACTATAGTTTACAGTGTTGGTTATAGGAAATGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTTATACTATAGTTTACAGTGTTGGTTATAGGAAATGAGT  50

seq1  CTGTTCAAATGAGCTCTGTGTAATATATAGTTATAAAAACAGACTATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAAATGAGCTCTGTGTAATATATAGTTATAAAAACAGACTATATA  100

seq1  TATATATATGTGTATATATATATATATATATATATCATTTACATGTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGTGTATATATATATATATATATATATCATTTACATGTATGA  150

seq1  CAATATATGTCATACATATGTTAACACAAATATTTGCTATAAAGATGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATGTCATACATATGTTAACACAAATATTTGCTATAAAGATGATG  200

seq1  TTTGTTTGTGTGAATTTTCTTTAAAATACTTACTACTTATACTTTTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTGTGAATTTTCTTTAAAATACTTACTACTTATACTTTTCTTA  250

seq1  AGTTCCTATATACCTGTTCAGTAACTATGAGATATGCTGCTGTGAAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTATATACCTGTTCAGTAACTATGAGATATGCTGCTGTGAAAGGC  300

seq1  ATATTTGAGGTGCATATTGATTGTTAGGAACATAATAATCACTTTGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAGGTGCATATTGATTGTTAGGAACATAATAATCACTTTGTCCT  350

seq1  TCTCTTCTCTTGCCCAGGCGCTCTCAGTATTTTACTAGACATAATAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCTTGCCCAGGCGCTCTCAGTATTTTACTAGACATAATAAAAA  400

seq1  ACTATAATCTATTAAAGTGCTCTGTAATTTTTGCCTTTACCTAAGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATCTATTAAAGTGCTCTGTAATTTTTGCCTTTACCTAAGTGTTA  450

seq1  ATTCCAATTTTGGTTTTATATTAACAGATATTAATGAAGGGAAACAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATTTTGGTTTTATATTAACAGATATTAATGAAGGGAAACAAACT  500

seq1  GAATTATCTGGTTTGCAGTCTACAAACAATTTTCTTTTATGTGTAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCTGGTTTGCAGTCTACAAACAATTTTCTTTTATGTGTAATTTT  550

seq1  TTCTATATTTATTGGTCTTTTATCAAAGTGCCAAACAAGATACGAATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATTTATTGGTCTTTTATCAAAGTGCCAAACAAGATACGAATCTA  600

seq1  AGTATTAATATTTAGGTACTTGTGGATGTAGCCATATTTACCAAACTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAATATTTAGGTACTTGTGGATGTAGCCATATTTACCAAACTTAG  650

seq1  TAGATACCAAGTGATAGATACTTATGACTTATAAAGTGATGTTTTTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACCAAGTGATAGATACTTATGACTTATAAAGTGATGTTTTTGGTA  700

seq1  GCTTCTAATGAACTACTTTGCCAGAAGATTAGTTGTTGTT-GGGGTTGTG  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTTCTAATGAACTACTTTGCCAGAAGATTAGTTGTTGTTGGGGGTTGTG  750

seq1  ACTGTTTTGTTTGTA  764
      |||||||||||||||
seq2  ACTGTTTTGTTTGTA  765

seq1: chr2_111521046_111522086
seq2: B6Ng01-033G19.g_65_1089 (reverse)

seq1  CCTTAAAAAAAAAAAGACAACTCCAAGTGAATAAAATAAAATAAATGCAA  50
      |||| ||||||||||||| ||||  ||||||| |||||||   |||||||
seq2  CCTT-AAAAAAAAAAGAC-ACTC--AGTGAAT-AAATAAA--TAATGCAA  43

seq1  AATCTGACAAGAGTAAACTGTGTGAATGGCTTTTGGGTTTTAACCAATTT  100
      ||||| |||||||| |||||||||||| |||||  || ||||||||||||
seq2  AATCT-ACAAGAGT-AACTGTGTGAAT-GCTTT--GGGTTTAACCAATTT  88

seq1  TATAGCACTAGGCATAAATTCTATCCTGTGGAAAAGGCATCAAAAAATTG  150
      |||||||||||||||||| |||||||||| ||||||||||| ||||||||
seq2  TATAGCACTAGGCATAAA-TCTATCCTGT-GAAAAGGCATC-AAAAATTG  135

seq1  TTGGTTTCTCCATCAGACAACAGTCATACTATAGTAGTGGACACATCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCTCCATCAGACAACAGTCATACTATAGTAGTGGACACATCTTG  185

seq1  CCAGATAGGATTCTATTTTACCATAACTGATCTAGAGTTGAAAAAGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAGGATTCTATTTTACCATAACTGATCTAGAGTTGAAAAAGGCCA  235

seq1  TTGAAGTCTTTTTTTTCTGACAGTGCCCTGAGCAACTTTTAGCACCATGA  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTC-TTTTTTTCTGACAGTGCCCTGAGCAACTTTTAGCACCATGA  284

seq1  ATCCTATAGACTGGGAAAAAGCACCCCCAGTCAACTTGAAATTGATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATAGACTGGGAAAAAGCACCCCCAGTCAACTTGAAATTGATTGCT  334

seq1  CTGTCTCCTGACGATAAAAGTTTTGTTTCTTTTTTAATCAACAAGGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTGACGATAAAAGTTTTGTTTCTTTTTTAATCAACAAGGTTTT  384

seq1  TCCACATATATATGGTGGACAAACAAGGGCAAAGGCAACAGTCTGGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATATATATGGTGGACAAACAAGGGCAAAGGCAACAGTCTGGGTTG  434

seq1  TTTTAGACACTTCTGAAGCCTCGCTGGCCACCAGCAACATATTTGTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGACACTTCTGAAGCCTCGCTGGCCACCAGCAACATATTTGTACTT  484

seq1  ACAAATATGTTTGTTAAATGCCTAATGTGTTTAATTACTAAATTAAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGTTTGTTAAATGCCTAATGTGTTTAATTACTAAATTAAATAC  534

seq1  AATAGTTTTAATAATTAGATAATCAATGGATACTGTCCTTGTGGAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTTAATAATTAGATAATCAATGGATACTGTCCTTGTGGAAATTA  584

seq1  AATTTCAGGATATTATACAATATTAAATAATAATTTACAGGATAAGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGGATATTATACAATATTAAATAATAATTTACAGGATAAGTTTA  634

seq1  AGTGCTAAATTGAGATAATTTTGAAATATAACCATTCTTTATTCATACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAAATTGAGATAATTTTGAAATATAACCATTCTTTATTCATACAA  684

seq1  TTTTATATATTATTCACCTGTTTTTTAAAATAACAGAAAGTAAATTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATATTATTCACCTGTTTTTTAAAATAACAGAAAGTAAATTCACT  734

seq1  GCTAGTTTTTGTGAAGCTTATCTCTTTGCTTCATAATTGTTTTTTATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTTTGTGAAGCTTATCTCTTTGCTTCATAATTGTTTTTTATTCA  784

seq1  CAAAAGTGGTACTTGGAATCTAGCTAAGACAAAGTGATGATTTTAGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTGGTACTTGGAATCTAGCTAAGACAAAGTGATGATTTTAGTCAT  834

seq1  TGGGCAAATGAACAATTTCAGGCATATATGGTAGTACTCACGTGGATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAATGAACAATTTCAGGCATATATGGTAGTACTCACGTGGATATT  884

seq1  ACTTAAATATTTTATTTATGAATTGAAATGTGAATATGCCCCCAAATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATATTTTATTTATGAATTGAAATGTGAATATGCCCCCAAATTTT  934

seq1  AAGTACAAGTTATTAAAAACATGTAAGAACTACTTGATGGCATTCCTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAGTTATTAAAAACATGTAAGAACTACTTGATGGCATTCCTGTG  984

seq1  TGGAAAAACCATTCCTATTTATATTTTAAGGTGAGGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAACCATTCCTATTTATATTTTAAGGTGAGGAATTC  1025