BAC Information

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BAC

Clone NameB6Ng01-033K03
Chromosome2 (Build37)7 (Build37)
Map Location 142,776,156 - 142,776,67124,515,286 - 24,516,343
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033K03.bB6Ng01-033K03.g
ACCDH862624DH862625
length1,0721,045
definitionDH862624|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K03, 5' end.DH862625|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,156 - 142,776,671)(24,515,286 - 24,516,343)
sequence
gaattctttgttcagctctgagccccagtttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggattgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttaatttctgggtcttcaattttattccagtgg
tctacttgtctgtcattacaccagtaccatacagttttttatcacaattg
ctctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctt
ttatcctcgagaagagttttttctttcctaggttttttgttattccagat
gaatttgcaaattgctccttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttgggcaagatagccat
ttttacaatgttgatcctgccaatccatgagcacgggagatctttctatc
ttctgagatcttctttatttctttcttcagagacttgagtttttatatac
agatcttacacttccttagttagagtcatgcgagatatttttatatattt
gagaattattgagaagggtgtgttctccaatttctttctccgcctgttta
ttcttttggagagaaagcaatggcttgtttagttattttatatcgccact
ttcccgagctgtttatcaggtt
gaattctttgtttagctatgtaccacattttaatggggttatttgatttt
ctggagttcaccttcttgagttctttatatacatttgatattagtcccct
atctggtttaggattggtaacgatcctttcccaatctattggcggccttt
ttgtcttattgatggtgtcttttgctttacagaagctttgcaatttcatg
aggtcccatttgttgattcttgatcatacagcacaagccatttacttcta
gtttttggaatctttttgaaacttgtgactctgtgggccaccattcataa
ctcataacctagtggatcctgttcaattggttcaaattccattatgaagt
ctggaaaagccatctttttgatttgttttgttttgttttgttttgttttg
ttttttaaaagatacaggctacagttttacagtcttgccccaagctggtg
ctgtaggattttgattgaattcatgttaaatttcatttctaaaagagtta
ttattattactttactcattgtttgtttgttatctcttcatagttttact
actattttttcacaatttcttttcctatttaccttacatcctattcacag
cctacctcctctgctcccagtcttgaacttactaattcctgccctcatta
cacaacttcccttctcctgagaaggagaagctcctgttgggtaccacacc
acccttgaatatctagtaccaaaaggactaagcaccacctctcccactga
ggtctaattaggcagaaaaagtagggtgagagggtccttccttaagctaa
gcttgtttccactagctcataattcagttatctcatttatactaatttaa
gttctgccacttagcaggtacctatcaccagttttatacatcagatttcc
ttcctgtctgtgtggcaatctccctacacctgactctttccagacatctc
tctctgtcagagtccaccttacaatctcctatttgctatgggcttagcat
atcttttaacaaattatttcaaccctgccttgaccgaaaatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776156_142776671
seq2: B6Ng01-033K03.b_613_1117 (reverse)

seq1  AACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAA  50
      ||||||||||||||| ||||  |||| ||  |||||||||| |||| |||
seq2  AACCTGATAAACAGC-TCGGGAAAGTGGC--GATATAAAAT-AACT-AAA  45

seq1  CAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAA  100
      |||| || ||  ||||||||  | ||||||||||||||| ||||||||||
seq2  CAAGCCATTG--CTTTCTCTCCA-AAAGAATAAACAGGCGGAGAAAGAAA  92

seq1  TTAGGGAAACAACACCCTTCTCAAT-AGTCACAAATAATAT-AAAATATC  148
      ||  ||| |  |||||||||||||| | || ||||| |||| ||||||||
seq2  TT--GGAGAACACACCCTTCTCAATAATTCTCAAAT-ATATAAAAATATC  139

seq1  TCGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTC  198
      || || |||||||||||||||||||| ||||||||||| |||||||| ||
seq2  TC-GCATGACTCTAACTAAGGAAGTGTAAGATCTGTAT-ATAAAAAC-TC  186

seq1  AAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAGGATCT  248
      ||||||||||||||||||| |||||||||||||||||||| ||| |||||
seq2  AAGTCTCTGAAGAAAGAAA-TAAAGAAGATCTCAGAAGATAGAAAGATCT  235

seq1  CCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTG-  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCGTGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGC  285

seq1  CCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCA  335

seq1  ATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACA  385

seq1  AAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGT  447
      |||||||||||| || ||||| ||||||| ||||||||||||||||||||
seq2  AAAAACCTAGGAAAGAAAAAACTCTTCTCGAGGATAAAAGAACCTCTGGT  435

seq1  GGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGAT-AA  496
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAA  485

seq1  AAACTGCATGGTACTGGTAT  516
      |||||| ||||||||||| |
seq2  AAACTGTATGGTACTGGTGT  505

seq1: chr7_24515286_24516343
seq2: B6Ng01-033K03.g_67_1111

seq1  GAATTCTTTGTTTAGCTATGTACCACATTTTAATGGGGTTATTTGATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTATGTACCACATTTTAATGGGGTTATTTGATTTT  50

seq1  CTGGAGTTCACCTTCTTGAGTTCTTTATATACATTTGATATTAGTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTCACCTTCTTGAGTTCTTTATATACATTTGATATTAGTCCCCT  100

seq1  ATCTGGTTTAGGATTGGTAACGATCCTTTCCCAATCTATTGGCGGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTTTAGGATTGGTAACGATCCTTTCCCAATCTATTGGCGGCCTTT  150

seq1  TTGTCTTATTGATGGTGTCTTTTGCTTTACAGAAGCTTTGCAATTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTATTGATGGTGTCTTTTGCTTTACAGAAGCTTTGCAATTTCATG  200

seq1  AGGTCCCATTTGTTGATTCTTGATCATACAGCACAAGCCATTTACTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCATTTGTTGATTCTTGATCATACAGCACAAGCCATTTACTTCTA  250

seq1  GTTTTTGGAATCTTTTTGAAACTTGTGACTCTGTGGGCCACCATTCATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGGAATCTTTTTGAAACTTGTGACTCTGTGGGCCACCATTCATAA  300

seq1  CTCATAACCTAGTGGATCCTGTTCAATTGGTTCAAATTCCATTATGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAACCTAGTGGATCCTGTTCAATTGGTTCAAATTCCATTATGAAGT  350

seq1  CTGGAAAAGCCATCTTTTTGATTTGTTTTGTTTTGTTTTGTTTTGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAGCCATCTTTTTGATTTGTTTTGTTTTGTTTTGTTTTGTTTTG  400

seq1  TTTTTTAAAAGATACAGGCTACAGTTTTACAGTCTTGCCCCAAGCTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAGATACAGGCTACAGTTTTACAGTCTTGCCCCAAGCTGGTG  450

seq1  CTGTAGGATTTTGATTGAATTCATGTTAAATTTCATTTCTAAAAGAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGATTTTGATTGAATTCATGTTAAATTTCATTTCTAAAAGAGTTA  500

seq1  TTATTATTACTTTACTCATTGTTTGTTTGTTATCTCTTCATAGTTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTACTTTACTCATTGTTTGTTTGTTATCTCTTCATAGTTTTACT  550

seq1  ACTATTTTTTCACAATTTCTTTTCCTATTTACCTTACATCCTATTCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTTCACAATTTCTTTTCCTATTTACCTTACATCCTATTCACAG  600

seq1  CCTACCTCCTCTGCTCCCAGTCTTGAACTTACTAATTCCTGCCCTCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCCTCTGCTCCCAGTCTTGAACTTACTAATTCCTGCCCTCATTA  650

seq1  CACAACTTCCCTTCTCCTGAGAAGGAGAAGCTCCTGTTGGGTACCACACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTCCCTTCTCCTGAGAAGGAGAAGCTCCTGTTGGGTACCACACC  700

seq1  ACCCTTGAATATCTAGTACCAAAAGGACTAAGCACCACCTCTCCCACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGAATATCTAGTACCAAAAGGACTAAGCACCACCTCTCCCACTGA  750

seq1  GGTCTAATTAGGCAGAAAAAGTAGGGTGAGAGGGTCCTTCCTTAAGCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAATTAGGCAGAAAAAGTAGGGTGAGAGGGTCCTTCCTTAAGCTAA  800

seq1  GCTTGTTTCCACTAGCTCATAATTCAGTTATCTCATTTATACTAATTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTCCACTAGCTCATAATTCAGTTATCTCATTTATACTAATTTAA  850

seq1  GTTCTGCCACTTAGCAGGTTACCTATCACCAGTTTTATACATCAGATTTC  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTTCTGCCACTTAGCAGG-TACCTATCACCAGTTTTATACATCAGATTTC  899

seq1  CTTCCTGTCTGTGTGGCAAATCTCCCTACACCTGACTCTTTCCCAGACAT  950
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  CTTCCTGTCTGTGTGGC-AATCTCCCTACACCTGACTCTTT-CCAGACAT  947

seq1  CCTCTCTCTGTCCAGAAGTCCCACCTTACAAATCTCCTATTTGCTATGGG  1000
       |||||||||| ||| ||| ||||||||| ||||||||||||||||||||
seq2  -CTCTCTCTGT-CAG-AGT-CCACCTTAC-AATCTCCTATTTGCTATGGG  992

seq1  CTATAGGCATTACCTTTTAACCAATTTATTTCAACCCTGCCTTAGACAGA  1050
      || || ||| || ||||||| ||| |||||||||||||||||| ||| ||
seq2  CT-TA-GCA-TATCTTTTAA-CAAATTATTTCAACCCTGCCTT-GACCGA  1037

seq1  AAATGAAA  1058
      ||||||||
seq2  AAATGAAA  1045