BAC Information

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BAC

Clone NameB6Ng01-033M01
Chromosome2 (Build37)6 (Build37)
Map Location 28,671,265 - 28,671,628148,449,115 - 148,449,775
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCol5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643
Downstream geneGtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033M01.bB6Ng01-033M01.g
ACCDH862715DH862716
length1,010662
definitionDH862715|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M01, 5' end.DH862716|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,671,265 - 28,671,628)(148,449,115 - 148,449,775)
sequence
gaattccagaaatggagggcacaactgtgatccaggtcttgagggtggaa
gacacaggtttttgatctggatcttgaagcatgggccatgaaaagcatag
gccatgaaaagcgtaggcccaggcaaggtgatacaggcctttaatcctag
gagctagaggcaactatatctttgagttcaaggctatcctgggacagagc
aagctccaagtaaagaatagcttaggtttaagcattgtggcacacacttt
taatctggaccataccttctgctggaggcctacataaggacattggaaaa
aggaagggtttcgtcttctttgcctgcttgcacttacttgccagtacata
catctgtgggaacctacttcctcagaattccagcttatatagaagtggaa
acacctatccttgtgtagcactgaacaattactagatttttggacttccc
actcacagctgccaattgttggataagttgaattgcagactgtaaatcat
cccaataaattaccttaatatatagatacattccataagttctgtgattc
tagagagccctgtctaatacaacaatctatatagactacatggataccaa
cttagttccatcgcctagatgttgtaaaaaatgtttagatcttcctccaa
catggtcttaaaaggaaatggacattgctcagtatggtctcttccctcca
tccatctgctgtgccaccgcagggtgaaatacttgctatgcattactgtg
accaaagtaccatataagtaattttaaggaaagaaagaaagaaagaaaga
aagaaagaaaggaaagaaagagagaaagaaagaaagagagaaagagagaa
agaaagaaagaaaagaaagagcttactttggcctgtggctttagagtttt
ggtctatggtttcttggtccccagaacttgggaagacatcatgatggctg
gagagtgtagctggtcacttcatggctatcagaaagcaactagtacagta
gatcaggccc
gaattcagctgttgttaccctctggaagtccagggcaagttcagtgatgt
gtataatatctgcaaagaacctgggccatgaagtgagatgacagagtaga
agaaaatggagccaaaaaaatcctgggccaaattagagatcaaagggcca
gagaagtggtgagagagttaagggtccagaggagtaacagctagagtgag
attcagatttcagggaagaggacctggagacttaaagcgggcctgttgtg
accacgggaatggggtaaaagggcaggaccatagagtcagagtgaccctg
aggccaagtggctcagaacttggtgggaaatagatacacaggcagtgttg
gggccacagggagtctaagcagagtggccaagtctctgaaggctggaagg
gaggcaactgagccccgagtgataagagacaaaaacaagctggcaaacag
cctttctcatgtctctcacggtgacaaaaccacccaagtgctcctggcag
tgctgcagactgcccgccatccctttcccccagtttccagtagaaaattt
agaggatgcacttgctctagtcataaggctgtaagtactgagccctgggc
tgagatcaaacaacaatttcattttttaattcgtatgcaactgtgagcta
atcttgatctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_28671265_28671628
seq2: B6Ng01-033M01.b_102_616 (reverse)

seq1  TTGTATTAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGATAGTCTCTA  50
      ||||||||| ||||| |||||||| ||||||||||||||||  || ||||
seq2  TTGTATTAGACAGGGCTCTCTAGAATCACAGAACTTATGGAATGTATCTA  50

seq1  TATAGTAAAGGAATTTATT--GAAGACTTAAACAGTCTGCAGCCCAA--T  96
      |||| ||| | ||||||||  || || ||  ||||||||||   |||  |
seq2  TATATTAAGGTAATTTATTGGGATGATTT--ACAGTCTGCAATTCAACTT  98

seq1  TCCCAACAATGGTTCAGTAGTAGCTGTGAAT-GGAAGTCCAAGGATCTAG  145
        ||||||||       | | |||||||| | ||||||||||  ||||||
seq2  ATCCAACAAT-------TGGCAGCTGTGAGTGGGAAGTCCAAAAATCTAG  141

seq1  CAGTTACTCAG---------------------------------------  156
       | ||  ||||                                       
seq2  TAATTGTTCAGTGCTACACAAGGATAGGTGTTTCCACTTCTATATAAGCT  191

seq1  --------------------TCTCAC--------------GCA-------  165
                          || |||              |||       
seq2  GGAATTCTGAGGAAGTAGGTTCCCACAGATGTATGTACTGGCAAGTAAGT  241

seq1  GCAAGCAGGCGAAGGAGCAAGA-GCAAGGCTCCTTTCTTCCAATGTCCTT  214
      |||||||||| |||    |||| | ||  || | || |||||||||||||
seq2  GCAAGCAGGCAAAG----AAGACGAAACCCTTCCTTTTTCCAATGTCCTT  287

seq1  ATAT-TCTCTCCAGCAGAAGGTGTAGCCCAGATTAAAGGTGTGTTCCACC  263
      || |    |||||||||||||| | | |||||||||| |||||| |||| 
seq2  ATGTAGGCCTCCAGCAGAAGGTATGGTCCAGATTAAAAGTGTGTGCCACA  337

seq1  ACAC----------------CTTTA---------------ATCCCA-GAT  281
      |  |                |||||                ||||| |||
seq2  ATGCTTAAACCTAAGCTATTCTTTACTTGGAGCTTGCTCTGTCCCAGGAT  387

seq1  GACCTTGAACTCAGAGATTTA---------ATCTTCTGGAATCCATAGCC  322
        ||||||||||| |||| ||         | || || | ||  |  |||
seq2  AGCCTTGAACTCAAAGATATAGTTGCCTCTAGCTCCTAGGATTAAAGGCC  437

seq1  ACTAT------------GCC--------TCAAGATCT-------------  339
        |||            |||        ||| |  ||             
seq2  TGTATCACCTTGCCTGGGCCTACGCTTTTCATGGCCTATGCTTTTCATGG  487

seq1  -CCATAC--CAAGATCCAGATCAGAAAC  364
       |||| |  |||||||||||||| ||||
seq2  CCCATGCTTCAAGATCCAGATCAAAAAC  515

seq1: chr6_148449115_148449775
seq2: B6Ng01-033M01.g_62_723

seq1  GAATTCAGCTGTTGTTACCCTCTGGAAGTCCAGGGCAAGTTCAGTGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGTTGTTACCCTCTGGAAGTCCAGGGCAAGTTCAGTGATGT  50

seq1  GTATAATATCTGCAAAGAACCTGGGCCATGAAGTGAGATGACAGAGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATATCTGCAAAGAACCTGGGCCATGAAGTGAGATGACAGAGTAGA  100

seq1  AGAAAATGGAGCCAAAAAAATCCTGGGCCAAATTAGAGATCAAAGGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGGAGCCAAAAAAATCCTGGGCCAAATTAGAGATCAAAGGGCCA  150

seq1  GAGAAGTGGTGAGAGAGTTAAGGGTCCAGAGGAGTAACAGCTAGAGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGGTGAGAGAGTTAAGGGTCCAGAGGAGTAACAGCTAGAGTGAG  200

seq1  ATTCAGATTTCAGGGAAGAGGACCTGGAGACTTAAAGCGGGCCTGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATTTCAGGGAAGAGGACCTGGAGACTTAAAGCGGGCCTGTTGTG  250

seq1  ACCACGGGAATGGGGTAAAAGGGCAGGACCATAGAGTCAGAGTGACCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGGGAATGGGGTAAAAGGGCAGGACCATAGAGTCAGAGTGACCCTG  300

seq1  AGGCCAAGTGGCTCAGAACTTGGTGGGAAATAGATACACAGGCAGTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGTGGCTCAGAACTTGGTGGGAAATAGATACACAGGCAGTGTTG  350

seq1  GGGCCACAGGGAGTCTAAGCAGAGTGGCCAAGTCTCTGAAGGCTGGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACAGGGAGTCTAAGCAGAGTGGCCAAGTCTCTGAAGGCTGGAAGG  400

seq1  GAGGCAACTGAGCCCCGAGTGATAAGAGACAAAAACAAGCTGGCAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACTGAGCCCCGAGTGATAAGAGACAAAAACAAGCTGGCAAACAG  450

seq1  CCTTTCTCATGTCTCTCACGGTGACAAAACCACCCAAGTGCTCCTGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCATGTCTCTCACGGTGACAAAACCACCCAAGTGCTCCTGGCAG  500

seq1  TGCTGCAGACTGCCCGCCATCCCTTTCCCCCAGTTTCCAGTAGAAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGACTGCCCGCCATCCCTTTCCCCCAGTTTCCAGTAGAAAATTT  550

seq1  AGAGGATGCACTTGCTCTAGTCATAAGGCTGTAAGTACTGAGCCCTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATGCACTTGCTCTAGTCATAAGGCTGTAAGTACTGAGCCCTGGGC  600

seq1  TGAGATCAAACAACAATTTCA-TTTTTAATTCGTATGCAACTGTGAGCTA  649
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGAGATCAAACAACAATTTCATTTTTTAATTCGTATGCAACTGTGAGCTA  650

seq1  ATCTTGATCTAG  661
      ||||||||||||
seq2  ATCTTGATCTAG  662