BAC Information

Click to search

BAC

Clone NameB6Ng01-033N12
Chromosome2 (Build37)
Map Location 71,297,785 - 71,421,440
singlet/doubletdoublet
Overlap geneMetapl1, LOC100040207, Dlx1, Dlx1as, Dlx2
Upstream geneSp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1, Mettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177
Downstream geneGm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033N12.bB6Ng01-033N12.g
ACCDH862780DH862781
length476739
definitionDH862780|Mus musculus domesticus DNA, BAC clone: B6Ng01-033N12, 5' end.DH862781|Mus musculus domesticus DNA, BAC clone: B6Ng01-033N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,420,960 - 71,421,440)(71,297,785 - 71,298,521)
sequence
tacacacatcccattcacaaattctgttacacggctagcaaaggctaatg
ggaggggagaggggagagaaagaatgtgcaattcagataacaagtgacaa
caataactccccagaggaatcctgggtcaagctgggcatcttaggtaggg
ctctagaaggtgctgaggtcacagagcctcagagacctcacttgcatgtg
agggattgctagacagcatctattgagatgtgaggactgaagtttacagt
ggtttctcactctgagacttaggttttacagatgggtggggctaaagtat
agaagctggaaggaactggagtggatctgcttcttccaaaaaaaaaagtg
catgaagatagggcaggaaagacagcttcagcagctaagaacaggacaga
gcctgtttcatcctgattggacttttagcctgcaaatgtgtgaactgaat
aaacctcttttctttataaaggtagc
gaattcaggtggcagggagagcctggagtatcttcattgaggtgactttg
gactctgccaaacagtaatgagtcttactggagggacacgcctcaaagtc
ctgtgtcccacagcacagcatgacatggtggtgctcctggaacagagtga
gggaagggagttgggagctggacttgttacctcatggaaaggagacatga
actaggttggtcctgaaggatgtgaaggcagtcagccacaggagaggaga
gcactccagaggtgtcaagtcagagtggtgggagacacacctccaggaca
caggaacagtcaggaagtgtttagaggatttagagagaggatctgtgtaa
aggattcacaggagatgaagccgagtcagaatctgtcatggaaaagaaac
tgatgaccaactgatggtcatcaagtaggcgctgattgtagacagagaaa
tgagagggtgtctccattttaatctactgttcaaggactgactgtattgg
agaagacctttgcagtctgtcagatgacagtgcagaatcagagcagtggt
gagagcagcagcatccgcagggtccctggggatgcagagggaggagaagg
agccacctgggtgcaaagaagggatggacagacggagagccaagtcaggg
aagacttctcaggaggaagtttggggtgcactaagtaaaagtgagtgaat
tcggccactaagaagtacacagagatgtggtgcaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_71420960_71421440
seq2: B6Ng01-033N12.b_47_528 (reverse)

seq1  GCTACCTTTATAAAGAAAAGAGGTTTATTCAGTTCACACATTTGCAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTTATAAAGAAAAGAGGTTTATTCAGTTCACACATTTGCAGGCT  50

seq1  AAAAGTCCAATCAGGATGATACAGGCTCTGTCCTGTTCTTAGCTGCTG-A  99
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  AAAAGTCCAATCAGGATGAAACAGGCTCTGTCCTGTTCTTAGCTGCTGAA  100

seq1  GCTGTCTTTCCTGCCCTATCTTCATGCACTTTTTTTTTTGGAAGAAGCAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTTCCTGCCCTATCTTCATGCACTTTTTTTTTTGGAAGAAGCAG  150

seq1  ATCCACTCCAGTTCCTTCCAGCTTCTATACTTTAGCCCCACCCATCTGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTCCAGTTCCTTCCAGCTTCTATACTTTAGCCCCACCCATCTGTA  200

seq1  AAACCTAAGTCTCAGAGTGAGAAACCACTGTAAACTTCAGTCCTCACATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAAGTCTCAGAGTGAGAAACCACTGTAAACTTCAGTCCTCACATC  250

seq1  TCAATAGATGCTGTCTAGCAATCCCTCACATGCAAGTGAGGTCTCTGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGATGCTGTCTAGCAATCCCTCACATGCAAGTGAGGTCTCTGAGG  300

seq1  CTCTGTGACCTCAGCACCTTCTAGAGCCCTACCTAAGATGCCCAGCTTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGACCTCAGCACCTTCTAGAGCCCTACCTAAGATGCCCAGCTTGA  350

seq1  CCCAGGATTCCTCTGGGGAGTTATTGTTGTCACTTGTTATCTGAATTGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATTCCTCTGGGGAGTTATTGTTGTCACTTGTTATCTGAATTGCA  400

seq1  CATTCTTTCTCTCCCCTCTCCCCTCCCATTAGCCTTTGCTAGCCGTGTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTCTCTCCCCTCTCCCCTCCCATTAGCCTTTGCTAGCCGTGTAA  450

seq1  CAGAATTTGTGAATGGGATGTGTGTAGAATTC  481
      ||||||||||||||||||||||||||||||||
seq2  CAGAATTTGTGAATGGGATGTGTGTAGAATTC  482

seq1: chr2_71297785_71298521
seq2: B6Ng01-033N12.g_71_809

seq1  GAATTCAGGTGGCAGGGAGAGCCTGGAGTATCTTCATTGAGGTGACTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGGCAGGGAGAGCCTGGAGTATCTTCATTGAGGTGACTTTG  50

seq1  GACTCTGCCAAACAGTAATGAGTCTTACTGGAGGGACACGCCTCAAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCCAAACAGTAATGAGTCTTACTGGAGGGACACGCCTCAAAGTC  100

seq1  CTGTGTCCCACAGCACAGCATGACATGGTGGTGCTCCTGGAACAGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCCACAGCACAGCATGACATGGTGGTGCTCCTGGAACAGAGTGA  150

seq1  GGGAAGGGAGTTGGGAGCTGGACTTGTTACCTCATGGAAAGGAGACATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGAGTTGGGAGCTGGACTTGTTACCTCATGGAAAGGAGACATGA  200

seq1  ACTAGGTTGGTCCTGAAGGATGTGAAGGCAGTCAGCCACAGGAGAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTTGGTCCTGAAGGATGTGAAGGCAGTCAGCCACAGGAGAGGAGA  250

seq1  GCACTCCAGAGGTGTCAAGTCAGAGTGGTGGGAGACACACCTCCAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCAGAGGTGTCAAGTCAGAGTGGTGGGAGACACACCTCCAGGACA  300

seq1  CAGGAACAGTCAGGAAGTGTTTAGAGGATTTAGAGAGAGGATCTGTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACAGTCAGGAAGTGTTTAGAGGATTTAGAGAGAGGATCTGTGTAA  350

seq1  AGGATTCACAGGAGATGAAGCCGAGTCAGAATCTGTCATGGAAAAGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCACAGGAGATGAAGCCGAGTCAGAATCTGTCATGGAAAAGAAAC  400

seq1  TGATGACCAACTGATGGTCATCAAGTAGGCGCTGATTGTAGACAGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCAACTGATGGTCATCAAGTAGGCGCTGATTGTAGACAGAGAAA  450

seq1  TGAGAGGGTGTCTCCATTTTAATCTACTGTTCAAGGACTGACTGTATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGGTGTCTCCATTTTAATCTACTGTTCAAGGACTGACTGTATTGG  500

seq1  AGAAGACCTTTGCAGTCTGTCAGATGACAGTGCAGAATCAGAGCAGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCTTTGCAGTCTGTCAGATGACAGTGCAGAATCAGAGCAGTGGT  550

seq1  GAGAGCAGCAGCATCCGCAGGGTCCCTGGGGATGCAGAGGGAGGAGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGCAGCATCCGCAGGGTCCCTGGGGATGCAGAGGGAGGAGAAGG  600

seq1  AGCCACCTGGGGGCAAAGAAGGGATGGACAGACGGAGAGCCAAGTCA-GG  649
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  AGCCACCTGGGTGCAAAGAAGGGATGGACAGACGGAGAGCCAAGTCAGGG  650

seq1  AAGACTTCTCAGGAGGAAGTTT-GGGTGCAACTAAGTAAAAGTGAGTGAA  698
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  AAGACTTCTCAGGAGGAAGTTTGGGGTGC-ACTAAGTAAAAGTGAGTGAA  699

seq1  TTCGGCCACTAAG-AGTACACAGAGATGTGGTGCAAATTT  737
      ||||||||||||| ||||||||||||||||||||||||||
seq2  TTCGGCCACTAAGAAGTACACAGAGATGTGGTGCAAATTT  739