BAC Information

Click to search

BAC

Clone NameB6Ng01-034H12
Chromosome2 (Build37)
Map Location 129,197,006 - 129,198,039
singlet/doubletsinglet
Overlap geneOTTMUSG00000015529
Upstream geneLOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b
Downstream geneLOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034H12.bB6Ng01-034H12.g
ACCDH863216DH863217
length1,1901,033
definitionDH863216|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H12, 5' end.DH863217|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaccagatttctaatgaagaattaatgcaaatacacctcaaatt
attccacaaaatagaagtagaaggaacatgcccaatttatttcatgaggc
caaagttaccctgatactcaaaccacagaaagagccaacagcaaaaagag
aattatagaccaatttcccttatgaacatatatttaaaaattctcaataa
aacactttgcaaacagaattcaagaacacatcaaaaaggtcattcaccaa
gatcaagtaggcgtcatcccagaaatgtaacgcccatataaacagactgg
acagcaaaagccacatgtcatctcactgtaggcttcatcccagaaatgtc
actcacatgtaaacagaatggatggcaaaagccacatgtcatctcactag
atgaagaaaaatccaaaagtcccttggcaaaatccaacatccctccatga
taaaagtcttggagagattagaaatattcaagggacatacatagttataa
taatggcagtttatagcaagcccatagtcaacaccaacttaaatggggaa
aaacccaaagcattcccatgaaaatcagaaataaaacaactttgcccact
ctttccatacctattgaattcagtacttgaagtctttgttaatagtagta
agacaattggagatcaaaggggatacagataggaagggaagacattaaag
tctctttatttgcagatggtatgataacatatgtaagtgaccctaaaaat
ccccctaggtaattcctacagccgataacactttcagcaaatagcagata
caaattacaaagaaaatcagaagccttcctatacacaaatgacaaatgga
ctagaaaaaaatcaggaaacagatgatcatatatctgaaaatataaatat
tttggagtactctacagcagtgaaaacttgttgtaaacttcagatatgag
aagtactgagaagatcgagtaaagattccacgttcatgaattgtagatat
gtagtctagtccataaaatctcacatcttcaaactgaagcaattcagctc
cctggaaccaaaaatcgtaggctaacattcggattaaagactcagagata
cattccacttattgtcaagcttaataacagactcgctacgtaagcaaggt
cacttgaactgaactctaagccgaatcctgtacatatgct
gaattcttaggggaagaggctattgctaccctgaaataatttctaatccc
tggaagtcaaggggtggcagatagtgacacattcgcaagtgtgtcatcgt
ggtggaaatgggcattatttccccctggacaattgtgcagatggtgtcaa
tattaaaaatattgggttttcctgggttagctgtacattttaagtcagga
tgtgcggaacaaaggtaggcacgtagatgcacacccagaagtgtgtcacc
tctctcgcctccttgtgcttaagctgagggagctttgcagttggagtttg
gtaactggatggtgcttctgtgctctccatcaactgtgttagcaggggct
tctggagagacacgcacttccttgtgtgggtcagggcacacacagtatgc
aggtatcagtgtagacttatcatagggtcagggaactctggaagcaagcc
tatgcagtctgataatgccagggtgcttatttttttcttttattggatat
tttctttatttacatttcaaatgttatcccttttccaggtctcccctccg
gaaaccccctatcctctccccctcccctgcctctatgaggatgctccccc
actcacccacccactcctgctttcctgccctgccagggtacttataatac
catagccagtctcatgttgaaaccatatcagtgctaggtgatcagcagaa
tgagcctgaattaagttgcacagtgcaaaggtggtgaacgaggcatctgc
ctgttcatgagcacagtccatcttaaaaagtgaagagatagtctttgcct
aaaaaatttgttttggaaattcttgttttctataagatctggggagacca
agtctcttggccatatcaagcatcactagactgctaactcagagagccca
gggagcctacccaggggagctcttcttgcttggatggatgagcaccaggc
catatgaatgctgcatacagtctcttggcacttctacagtatagtagaat
cctcagtggaaaccttacttccttggctgagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129197006_129198039
seq2: B6Ng01-034H12.g_69_1101

seq1  GAATTCTTAGGGGAAGAGGCTATTGCTACCCTGAAATAATTTCTAATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGGGAAGAGGCTATTGCTACCCTGAAATAATTTCTAATCCC  50

seq1  TGGAAGTCAAGGGGTGGCAGATAGTGACACATTCGCAAGTGTGTCATCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCAAGGGGTGGCAGATAGTGACACATTCGCAAGTGTGTCATCGT  100

seq1  GGTGGAAATGGGCATTATTTCCCCCTGGACAATTGTGCAGATGGTGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAATGGGCATTATTTCCCCCTGGACAATTGTGCAGATGGTGTCAA  150

seq1  TATTAAAAATATTGGGTTTTCCTGGGTTAGCTGTACATTTTAAGTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAATATTGGGTTTTCCTGGGTTAGCTGTACATTTTAAGTCAGGA  200

seq1  TGTGCGGAACAAAGGTAGGCACGTAGATGCACACCCAGAAGTGTGTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGAACAAAGGTAGGCACGTAGATGCACACCCAGAAGTGTGTCACC  250

seq1  TCTCTCGCCTCCTTGTGCTTAAGCTGAGGGAGCTTTGCAGTTGGAGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGCCTCCTTGTGCTTAAGCTGAGGGAGCTTTGCAGTTGGAGTTTG  300

seq1  GTAACTGGATGGTGCTTCTGTGCTCTCCATCAACTGTGTTAGCAGGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGGATGGTGCTTCTGTGCTCTCCATCAACTGTGTTAGCAGGGGCT  350

seq1  TCTGGAGAGACACGCACTTCCTTGTGTGGGTCAGGGCACACACAGTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAGACACGCACTTCCTTGTGTGGGTCAGGGCACACACAGTATGC  400

seq1  AGGTATCAGTGTAGACTTATCATAGGGTCAGGGAACTCTGGAAGCAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCAGTGTAGACTTATCATAGGGTCAGGGAACTCTGGAAGCAAGCC  450

seq1  TATGCAGTCTGATAATGCCAGGGTGCTTATTTTTTTCTTTTATTGGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTCTGATAATGCCAGGGTGCTTATTTTTTTCTTTTATTGGATAT  500

seq1  TTTCTTTATTTACATTTCAAATGTTATCCCTTTTCCAGGTCTCCCCTCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATTTACATTTCAAATGTTATCCCTTTTCCAGGTCTCCCCTCCG  550

seq1  GAAACCCCCTATCCTCTCCCCCTCCCCTGCCTCTATGAGGATGCTCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCCTATCCTCTCCCCCTCCCCTGCCTCTATGAGGATGCTCCCCC  600

seq1  ACTCACCCACCCACTCCTGCTTTCCTGCCCTGCCAGGGTACTTATAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCCACCCACTCCTGCTTTCCTGCCCTGCCAGGGTACTTATAATAC  650

seq1  CATAGCCAGTCTCATGTTGAAACCATATCAGTGCTAGGTGATCAGCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCAGTCTCATGTTGAAACCATATCAGTGCTAGGTGATCAGCAGAA  700

seq1  TGAGCCTGAATTAAGTTGCACAGTGCAAAGGTGGTGAACGAGGCATCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGAATTAAGTTGCACAGTGCAAAGGTGGTGAACGAGGCATCTGC  750

seq1  CTGTTCATGAGCACAGTCCATCTTAAAAAGTGAAGAGATAGTCTTTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATGAGCACAGTCCATCTTAAAAAGTGAAGAGATAGTCTTTGCCT  800

seq1  AAAAAA-TTGTTTTGGAAAATTCTTG-TTTCTATAAGATCTGGGGAGACC  848
      |||||| ||||||||| ||||||||| |||||||||||||||||||||||
seq2  AAAAAATTTGTTTTGG-AAATTCTTGTTTTCTATAAGATCTGGGGAGACC  849

seq1  AAGTCTCTTGGCCATATCAAGCATCACTAGACTGCTAACTCAGAGAGCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTTGGCCATATCAAGCATCACTAGACTGCTAACTCAGAGAGCCC  899

seq1  AGGGAGCCTACCCAGGGGAGCTCTTCTTGCTTGGATGGAATGAGCAACCA  948
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  AGGGAGCCTACCCAGGGGAGCTCTTCTTGCTTGGATGG-ATGAGC-ACCA  947

seq1  GGCCATATGAATGCTGCATACAGTCTCTTGGGCACATCTACAGTATAGTA  998
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  GGCCATATGAATGCTGCATACAGTCTCTT-GGCACTTCTACAGTATAGTA  996

seq1  GAATCCTCAGTGGAAACCTAAC-TCCTTTGCTGAGCC  1034
      ||||||||||||||||||| || ||||| ||||||||
seq2  GAATCCTCAGTGGAAACCTTACTTCCTTGGCTGAGCC  1033