BAC Information

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BAC

Clone NameB6Ng01-034J13
Chromosome2 (Build37)17 (Build37)
Map Location 115,747,849 - 115,748,64829,269,775 - 29,269,947
singlet/doubletsingletsinglet
Overlap geneMrg1
Upstream geneLOC100043222, LOC100043232, LOC100043236, BC052040
Downstream geneG630016G05Rik, 2810405F15Rik, LOC433464, Tmco5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034J13.bB6Ng01-034J13.g
ACCDH863301DH863302
length801430
definitionDH863301|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J13, 5' end.DH863302|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,747,849 - 115,748,648)(29,269,775 - 29,269,947)
sequence
gaattctcactccattctacctttgagagattggtcaacataactatttt
tcttagtcagtaaccacagtagaagtttggactcttggctgatatgttat
cacaactattttgaaagccaaggtataaaagggattggatgcagagttct
tagtctgggtggggttgggattctttaattttttacagattagtgctctg
ggctatcaaggtcatgtagagtgacttgcctaggttacctgtcccttccc
ctaggcatacatctgacatctcaggggggaaggagtcagttttatgacat
gcttcctatggaatttttccatgtcaacttcaagtacagcaactagagaa
caaagccatgggtttcggtttttaattcttttcttcctaccacagttcat
tcacactgataatgaacaacactcctattaaacccctctctcttttcctc
tctcatcgtgaaacccaggaatgttattttacaatcatacatttccttca
agagattctgtgctggagggtgcataattatgaaacgcatctgttacata
aggtcctgttcagaattcactggttttcttaaacggggaaggtaaacttt
ttatccctgtgtcagagttgtttcatagactagaaagccttttgtcataa
ctatttcccaccagcatcactgaagagttatcaggggccagggagatggc
tcagtgtagaagcacctcccacttctttttgcagaggacagaattctatt
cccagaacccatgttgggaagctcccagctgcctataattcagatccagg
g
gaattcagtatattgaaagagagagagagagagagagagagagagagaga
gagagagagagaggagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaagaaagagagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagagagggagagagagggagagaaagaaagagagaaagagaaaga
aagaaagagagtgagaaagaaagaaataagaaagaaagagggagagagaa
agaaagaaagatagagaaagaatgaaaggagaaagaagaaagaaagagag
agagaaagaaagagagaaagagaaaggaaggaagaaagaaagaaatagga
aagaaagaaagagagagaaaggaagaagaaagagagaaagaaagaaagaa
aagaaataaagatagaaagaaagatagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115747849_115748648
seq2: B6Ng01-034J13.b_44_844

seq1  GAATTCTCACTCCATTCTACCTTTGAGAGATTGGTCAACATAACTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTCCATTCTACCTTTGAGAGATTGGTCAACATAACTATTTT  50

seq1  TCTTAGTCAGTAACCACAGTAGAAGTTTGGACTCTTGGCTGATATGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCAGTAACCACAGTAGAAGTTTGGACTCTTGGCTGATATGTTAT  100

seq1  CACAACTATTTTGAAAGCCAAGGTATAAAAGGGATTGGATGCAGAGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTATTTTGAAAGCCAAGGTATAAAAGGGATTGGATGCAGAGTTCT  150

seq1  TAGTCTGGGTGGGGTTGGGATTCTTTAATTTTTTACAGATTAGTGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGGGTGGGGTTGGGATTCTTTAATTTTTTACAGATTAGTGCTCTG  200

seq1  GGCTATCAAGGTCATGTAGAGTGACTTGCCTAGGTTACCTGTCCCTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCAAGGTCATGTAGAGTGACTTGCCTAGGTTACCTGTCCCTTCCC  250

seq1  CTAGGCATACATCTGACATCTCAGGGGGGAAGGAGTCAGTTTTATGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATACATCTGACATCTCAGGGGGGAAGGAGTCAGTTTTATGACAT  300

seq1  GCTTCCTATGGAATTTTTCCATGTCAACTTCAAGTACAGCAACTAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTATGGAATTTTTCCATGTCAACTTCAAGTACAGCAACTAGAGAA  350

seq1  CAAAGCCATGGGTTTCGGTTTTTAATTCTTTTCTTCCTACCACAGTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATGGGTTTCGGTTTTTAATTCTTTTCTTCCTACCACAGTTCAT  400

seq1  TCACACTGATAATGAACAACACTCCTATTAAACCCCTCTCTCTTTTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGATAATGAACAACACTCCTATTAAACCCCTCTCTCTTTTCCTC  450

seq1  TCTCATCGTGAAACCCAGGAATGTTATTTTACAATCATACATTTCCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCGTGAAACCCAGGAATGTTATTTTACAATCATACATTTCCTTCA  500

seq1  AGAGATTCTGTGCTGGAGGGTGCATAATTATGAAACGCATCTGTTACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCTGTGCTGGAGGGTGCATAATTATGAAACGCATCTGTTACATA  550

seq1  AGGTCCTGTTCAGAATTCACTGGTTTTCTTAAAC-GGGAAGGTAAAC-TT  598
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  AGGTCCTGTTCAGAATTCACTGGTTTTCTTAAACGGGGAAGGTAAACTTT  600

seq1  TTATCCCTGTGTCAGAGTTG-TTCATAGACTAGAAAGCCTTTTGTCATAA  647
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATCCCTGTGTCAGAGTTGTTTCATAGACTAGAAAGCCTTTTGTCATAA  650

seq1  CTATTTCCCACCAGCATCACTGAAGAGTTATCAGGGGGCCAGGGAGATGG  697
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTATTTCCCACCAGCATCACTGAAGAGTTATCA-GGGGCCAGGGAGATGG  699

seq1  CTCAGTGTAGAAGCACCTCCCACTTC-TTTTGCAGAGGACAGAAATTCTA  746
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  CTCAGTGTAGAAGCACCTCCCACTTCTTTTTGCAGAGGACAG-AATTCTA  748

seq1  TTCCCAGAACCCATGTTGGGAAGCTCACAGCTGCCTATAATTCCAGATCC  796
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  TTCCCAGAACCCATGTTGGGAAGCTCCCAGCTGCCTATAATT-CAGATCC  797

seq1  AGGG  800
      ||||
seq2  AGGG  801

seq1: chr17_29269775_29269947
seq2: B6Ng01-034J13.g_133_498 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TTTCTATCTTTCTTTCTATCTTTATTTCTTTTCTTTCTTTCTTTCTCTCT  50

seq1  --------------------------------------------------  0
                                                        
seq2  TTCTTCTTCCTTTCTCTCTCTTTCTTTCTTTCCTATTTCTTTCTTTCTTC  100

seq1  --------------------------------------------------  0
                                                        
seq2  CTTCCTTTCTCTTTCTCTCTTTCTTTCTCTCTCTCTTTCTTTCTTCTTTC  150

seq1  -----------------TTTCTTTCTTTCTTTCTTTCT--TTCTTTCTTT  31
                       | ||||||||||||||| |||   |||||||||
seq2  TCCTTTCATTCTTTCTCTATCTTTCTTTCTTTCTCTCTCCCTCTTTCTTT  200

seq1  C---TTTCTTTCTTTCTCTCTTTCTTTCTCTCTT--TCTTTCTCTCTTTC  76
      |   |||||||||||||| || ||||||| ||||  ||||||||||||||
seq2  CTTATTTCTTTCTTTCTCACTCTCTTTCTTTCTTTCTCTTTCTCTCTTTC  250

seq1  TCTCTTTCTCTCTCTCTTC--CTCTTTCTTTCTTTCTCTCTTTCTTTCTC  124
      | ||| || |||||||| |  |||||||||||||||| ||||||||||| 
seq2  TTTCTCTCCCTCTCTCTCCCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTT  300

seq1  TCTTTCTCTCTTTCTCTCTCTC-TTCCTCTTTCTTTCTTTCTTTCTTTCT  173
      ||||||| ||||||| |||||| ||| |||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTCTCTTTCTTCTTTCTTTCTTTCTTTCTTTCT  350

seq1  ----------------  173
                      
seq2  TTCTTTCTTTCTTTCT  366