BAC Information

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BAC

Clone NameB6Ng01-034P06
Chromosome2 (Build37)
Map Location 143,981,696 - 144,136,324
singlet/doubletdoublet
Overlap geneEG433481, Snx5, 8430406I07Rik, Ovol2
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160
Downstream genePpia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034P06.bB6Ng01-034P06.g
ACCDH863554DH863555
length1,030364
definitionDH863554|Mus musculus domesticus DNA, BAC clone: B6Ng01-034P06, 5' end.DH863555|Mus musculus domesticus DNA, BAC clone: B6Ng01-034P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,981,696 - 143,982,603)(144,135,961 - 144,136,324)
sequence
gaattcaacttagtgctattttcacatcgttcagtcaaacttagccagag
ttccaacgccctacttaaaattcaactagaaagttacctaccaagtacta
attagcattataaagtcagagtctgcagctccaggcctttcagttgttta
ctagaaaggacagtcttaagccagatacagtttaccataagaaaggttaa
agaatcccagtgaagcaagttttttctttagccctagattccaggcagaa
ctattgagcatagataattttcccccctcaggccagctttttcctttttt
ttattttgttaataatagggaggagatgtagtctcccctcccccagcctg
aaacctgcttgctcggggtggagcttcctgctcattcgttctgccacgcc
cactgctggaacctgcggagccacacccgtgcacctttctactggaccag
agattattcggcgggaatcgggtcccctcccccttccttcataactggtg
tcgcaacaataaaatttgagctttgatcagtatgaaattgccttagctcc
gtttcttcttttgccccgtctagattcctctcttacagctcgagcggcct
tctcagtcgaaccgttcacgttgcgagctgctggcggccgcaacatgaaa
gtatgaatttggttttgttttttgtttttttaatgaaagcaaaggaaatg
acatttgtcaaaggaaaaagaaaacatgaaagttttttttaaaaaactta
aaaaataaaatactcccatacatgcatacaatggccttctcagacttttc
ttcccatatactaccaccagcacaccagcaccacccaacacagcaccact
acattcacccagcacacatcagcatcataccagcaccaccaccagcacca
ccacagcacagcacagcatcatgcttaggttgctatctggccttgttctc
agtcgaggaaaaagtgagagttgaagatgcgagcttgtagacgtgactct
tcccatggcttgagccaatggtggcagccc
caatttgaggtgagggctagggaggggctgcccacaggacagggggcttt
cttaccttatcttccatcaggggctatattgagagagaccagaaggcaaa
caaaccccagcctgactaaagcagagaggacaatggtgtctttgtttggg
gccaaggagaaagattgcctggattgggaaaaatgcagatcagaagttta
aggcagggctgctagcctaagaaccctggaatccactccccacagcccag
ctcacctgtggtgtcgcctcatccgtggtttcatttagattttaacttac
atatttgtttttacctaaaaagataataatatatttacgtggggggtggg
gcgggatggtggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143981696_143982603
seq2: B6Ng01-034P06.b_195_1077

seq1  TTACTAGAAAGGACAGTCTTAAGCCAGATACAGTTTACCATAAGAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAAAGGACAGTCTTAAGCCAGATACAGTTTACCATAAGAAAGGT  50

seq1  TAAAGAATCCCAGTGAAGCAAGTTTTTTCTTTAGCCCTAGATTCCAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATCCCAGTGAAGCAAGTTTTTTCTTTAGCCCTAGATTCCAGGCA  100

seq1  GAACTATTGAGCATAGATAATTTTCCCCCCTCAGGCCAGCTTTTTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTGAGCATAGATAATTTTCCCCCCTCAGGCCAGCTTTTTCCTTT  150

seq1  TTTTTATTTTGTTAATAATAGGGAGGAGATGTAGTCTCCCCTCCCCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTGTTAATAATAGGGAGGAGATGTAGTCTCCCCTCCCCCAGC  200

seq1  CTGAAACCTGCTTGCTCGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCTGCTTGCTCGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCAC  250

seq1  GCCCACTGCTGGAACCTGCGGAGCCACACCCGTGCACCTTTCTACTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTGCTGGAACCTGCGGAGCCACACCCGTGCACCTTTCTACTGGAC  300

seq1  CAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCCTTCCTTCATAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCCTTCCTTCATAACTG  350

seq1  GTGTCGCAACAATAAAATTTGAGCTTTGATCAGTATGAAATTGCCTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGCAACAATAAAATTTGAGCTTTGATCAGTATGAAATTGCCTTAGC  400

seq1  TCCGTTTCTTCTTTTGCCCCGTCTAGATTCCTCTCTTACAGCTCGAGCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTTCTTCTTTTGCCCCGTCTAGATTCCTCTCTTACAGCTCGAGCGG  450

seq1  CCTTCTCAGTCGAACCGTTCACGTTGCGAGCTGCTGGCGGCCGCAACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAGTCGAACCGTTCACGTTGCGAGCTGCTGGCGGCCGCAACATG  500

seq1  AAAGTATGAATTTGGTTTTGTTTTTTGTTTTTTTAATGAAAGCAAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATGAATTTGGTTTTGTTTTTTGTTTTTTTAATGAAAGCAAAGGAA  550

seq1  ATGACATTTGTCAAAGGAAAAAGAAAACATGAAAGTTTTTTTTAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGACATTTGTCAAAGGAAAAAGAAAACATGAAAGTTTTTTTT-AAAAAA  599

seq1  CTTAAAAAAATAAAAATACTCCCATACATGCATACAATGGCCTTCTCAGA  650
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAA--TAAAATACTCCCATACATGCATACAATGGCCTTCTCAGA  647

seq1  CTTTTCTTCCCATATACTACCACCAGCACCACCAGCACCACCCAACACCA  700
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  CTTTTCTTCCCATATACTACCACCAGCA-CACCAGCACCACCCAACA-CA  695

seq1  GCACCACCACATTCACCCAGCACCAACATCAGCATCCAATACCAGCACCA  750
      ||||||| |||||||||||||||  |||||||||||  ||||||||||||
seq2  GCACCACTACATTCACCCAGCAC--ACATCAGCATC--ATACCAGCACCA  741

seq1  CCACCAGCACCCAACCACCAGCACCAGCACCAGCATCATGCCTAGGGTTT  800
      |||||||||||  |||| ||||| ||||| ||||||||||| ||||  ||
seq2  CCACCAGCACC--ACCA-CAGCA-CAGCA-CAGCATCATGCTTAGG--TT  784

seq1  GCTATCTGGCCTTGTTTCTCAGTTCGAGGAAACAGTGAGAGTTTGAAGAT  850
      |||||||||||||| ||||||| ||||||||| |||||||| ||||||||
seq2  GCTATCTGGCCTTG-TTCTCAG-TCGAGGAAAAAGTGAGAG-TTGAAGAT  831

seq1  GCAGAGCTGTGTAGACGTGACTCTTCCCATTGGCCTTTGAGCCCAATGTG  900
      || ||||| |||||||||||||||||||| ||||  ||||| ||||||  
seq2  GC-GAGCT-TGTAGACGTGACTCTTCCCA-TGGC--TTGAG-CCAATGGT  875

seq1  TGCAGCCC  908
       |||||||
seq2  GGCAGCCC  883

seq1: chr2_144135961_144136324
seq2: B6Ng01-034P06.g_71_434 (reverse)

seq1  TTCCACCATCCCGCCCCACCCCCCACGTAAATATATTATTATCTTTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCATCCCGCCCCACCCCCCACGTAAATATATTATTATCTTTTTAG  50

seq1  GTAAAAACAAATATGTAAGTTAAAATCTAAATGAAACCACGGATGAGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAACAAATATGTAAGTTAAAATCTAAATGAAACCACGGATGAGGCG  100

seq1  ACACCACAGGTGAGCTGGGCTGTGGGGAGTGGATTCCAGGGTTCTTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACAGGTGAGCTGGGCTGTGGGGAGTGGATTCCAGGGTTCTTAGGC  150

seq1  TAGCAGCCCTGCCTTAAACTTCTGATCTGCATTTTTCCCAATCCAGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCCTGCCTTAAACTTCTGATCTGCATTTTTCCCAATCCAGGCAA  200

seq1  TCTTTCTCCTTGGCCCCAAACAAAGACACCATTGTCCTCTCTGCTTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCTTGGCCCCAAACAAAGACACCATTGTCCTCTCTGCTTTAGT  250

seq1  CAGGCTGGGGTTTGTTTGCCTTCTGGTCTCTCTCAATATAGCCCCTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGGGTTTGTTTGCCTTCTGGTCTCTCTCAATATAGCCCCTGATG  300

seq1  GAAGATAAGGTAAGAAAGCCCCCTGTCCTGTGGGCAGCCCCTCCCTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAGGTAAGAAAGCCCCCTGTCCTGTGGGCAGCCCCTCCCTAGCC  350

seq1  CTCACCTCAAATTG  364
      ||||||||||||||
seq2  CTCACCTCAAATTG  364