BAC Information

Click to search

BAC

Clone NameB6Ng01-035C03
Chromosome2 (Build37)
Map Location 48,527,068 - 48,648,206
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383691, LOC100041457
Downstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035C03.bB6Ng01-035C03.g
ACCDH863687DH863688
length708780
definitionDH863687|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C03, 5' end.DH863688|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,527,068 - 48,527,786)(48,647,411 - 48,648,206)
sequence
gaattcttcaggagaatctttgggcaaaaataatagcaaaaaaaaaaaaa
aaaaagattctgaatggcttaagcagtaacaattcttttcctatacaaat
aagttctcctgaggggaggggattactaacagggtcactcggttctatta
aatgcccaggtgttttgtccctcctcatgcctgctatgggggcaccagca
atctgaatcataaaaccaatttttactaccaaaaataagtatcttttcct
ctcccctctgtcccatttagtaacatgaaggcactttatgatgattgtga
aggcagcctgctcaagtcatcatatatatcattggccaaaatggggccac
acttctggtgcctgatctcacccttggcaaaagaaggaagtttccatttt
gcatagctgctcatgtgggaacagtgtgtggactgggaaagggcccttcc
ataaggaatgagtccctctccatgccagtgtgaaaagaaaaccccaccaa
cccttgttactggacaaagtgctccttcaaaagccgcaccctccttatgt
accagatagcatctccgaagaactgaaactggttgccgtggcgttaagtg
gaggttttctaacctccctgaaatttcagcagttttccagataaaattaa
catcccaaccaaaataacaaatcgaaaggtctttctaatcctaacatttt
gagtgcca
gaattctcactggatgaactctgaatcagataaagtgaagatgtctggtg
aatggaacttttcctctttgttgtcaagcagctcaaatgatcacaattca
catcagtttgtctgccataacttcagactggctttgtatctagggtctct
tagaataacaccaagtaccagggtactctgactgccttcaagagatggtg
gtgagcacgactaccttccaagtgccatggtgtaaagctagtgcttttga
aggctgccctgaatgcaaggcaaggcctatgagaatcaaacaaataatgt
caaagatttgtgttcttaccaaaacacaaattgaggggttttccttaata
gatcctccttaaacggtggtcctttgtttccagttttatgaaaatgttga
tttggaccatttttactggtgctcttactttttagaaggttggttttcag
atatcattactttcccattctagaaaggaattttgatttggtctcctcat
tactgtagagatgatcttcatggataagaaaggaaagccactgcctcctg
ctccagcactggtgactcttcacagacccagtgttgagaccaagaagcca
gacccaaagaaatatgcattctgtttcaatccttgtgggctcctgaaaca
gctaagactcaagtacttgcttctttgctcagaggagtgctgagctgtct
gtcagcatgcatccctcattacattcctggaaaatgcatctatggacttt
tgaggtttgacatgtaaacatgaaatcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_48527068_48527786
seq2: B6Ng01-035C03.b_41_748

seq1  GAATTCTTCCAGGAGAATCTTTGGGCAAAAATAATAGCAAAAAAAAAAAA  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTT-CAGGAGAATCTTTGGGCAAAAATAATAGCAAAAAAAAAAAA  49

seq1  AAAAAAGATTCTGAATGGCTTAAGCAGTAACAATTCTTTTCCTATACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGATTCTGAATGGCTTAAGCAGTAACAATTCTTTTCCTATACAAA  99

seq1  TAAGTTCTCCTGAGGGGAGGGGATTACTAACAGGGTCACTCGGTTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTCCTGAGGGGAGGGGATTACTAACAGGGTCACTCGGTTCTATT  149

seq1  AAATGCCCAGGTGTTTTGTCCCTCCTCATGCCTGCTATGGGGGCACCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCAGGTGTTTTGTCCCTCCTCATGCCTGCTATGGGGGCACCAGC  199

seq1  AATCTGAATCATAAAACCAATTTTTACTACCAAAAATAAGTATCTTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAATCATAAAACCAATTTTTACTACCAAAAATAAGTATCTTTTCC  249

seq1  TCTCCCCTCTGTCCCATTTAGTAACATGAAGGCACTTTATGATGATTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTCTGTCCCATTTAGTAACATGAAGGCACTTTATGATGATTGTG  299

seq1  AAGGCAGCCTGCTCAAGTCATCATATATATCATTGGCCAAAATGGTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGGCAGCCTGCTCAAGTCATCATATATATCATTGGCCAAAATGGGGCCA  349

seq1  CACTTCTGGTGCCTGATCTCACCCTTGGCAAAAGAAGGAAGTTT-CAGTT  399
      |||||||||||||||||||||||||||||||||||||||||||| || ||
seq2  CACTTCTGGTGCCTGATCTCACCCTTGGCAAAAGAAGGAAGTTTCCATTT  399

seq1  TGCATAGCTGCTCATGTGGCAACAGTGTGTGGACTGGGAAA-GGCCCTT-  447
      ||||||||||||||||||| ||||||||||||||||||||| ||||||| 
seq2  TGCATAGCTGCTCATGTGGGAACAGTGTGTGGACTGGGAAAGGGCCCTTC  449

seq1  CATAAGGAATGAGTCCCTCTCCATGCCAGTGTG-AAAGAAAACCCAAC--  494
      ||||||||||||||||||||||||||||||||| ||||||||||| ||  
seq2  CATAAGGAATGAGTCCCTCTCCATGCCAGTGTGAAAAGAAAACCCCACCA  499

seq1  AACCTTGTTACTGGACAGAGTGCTCC-TCAAAAGCCGCACCCTCCTTATA  543
      | ||||||||||||||| |||||||| |||||||||||||||||||||| 
seq2  ACCCTTGTTACTGGACAAAGTGCTCCTTCAAAAGCCGCACCCTCCTTATG  549

seq1  TACCAGAGAGCATCTTCAGAAGAACTGAATCTGGCTTGCCAGTGCGTTTA  593
      ||||||| |||||| || ||||||||||| |||| ||||| |||   |||
seq2  TACCAGATAGCATC-TCCGAAGAACTGAAACTGG-TTGCC-GTGGCGTTA  596

seq1  AGTGATGATTATCTAAACCACCCTGAAATTCTCAGCATGTTTTCCAGATA  643
      ||||  | || ||| |||| |||||||||| |||||| ||||||||||||
seq2  AGTGGAGGTTTTCT-AACCTCCCTGAAATT-TCAGCA-GTTTTCCAGATA  643

seq1  TAAGTTGAACATCCCGAACCCAAAATAGACAAAATCTGAAATGTTCATTC  693
       ||  | ||||||||  | |||||||| || ||||| |||| | || |||
seq2  AAA--TTAACATCCC--AACCAAAATA-AC-AAATC-GAAA-GGTCTTTC  685

seq1  CTAAATCCTAAACATTTTGAGTGCCA  719
         |||||| ||||||||||||||||
seq2  --TAATCCT-AACATTTTGAGTGCCA  708

seq1: chr2_48647411_48648206
seq2: B6Ng01-035C03.g_65_844 (reverse)

seq1  GAAGATTTTAAATTGTTTTACATGTACAAACACTCAAAAAAGTTCATAAG  50
      |||||||| |   || ||||||||| ||||| |||  |||||| ||| ||
seq2  GAAGATTTCA---TG-TTTACATGT-CAAAC-CTC--AAAAGTCCAT-AG  41

seq1  ATGCATTTCTCCAGGAATTGTAATGAGTGATGCCATGCTGACCAGACAGC  100
      |||||||| |||||||| ||||||||| |||| |||||||| ||||||||
seq2  ATGCATTT-TCCAGGAA-TGTAATGAGGGATG-CATGCTGA-CAGACAGC  87

seq1  TCAGCACTCCCTCTGAGCAAAGAAGCAAGTACCCTGAGTCTTAGCTGTTT  150
      |||||||| |||||||||||||||||||||| | ||||||||||||| ||
seq2  TCAGCACT-CCTCTGAGCAAAGAAGCAAGTA-CTTGAGTCTTAGCTG-TT  134

seq1  TCAGAAGCCCACAAGGATTGAAACCAGAATGCATATTTTCTTTTGGGTCT  200
      |||| |||||||||||||||||| ||||||||||||||   |||||||||
seq2  TCAGGAGCCCACAAGGATTGAAA-CAGAATGCATATTT--CTTTGGGTCT  181

seq1  GGCTTCTTTGTCTCAACACTGTGTCTGTG-AGAGTCACCAGTGCTGGAGC  249
      |||||||| |||||||||||| ||||||| ||||||||||||||||||||
seq2  GGCTTCTTGGTCTCAACACTGGGTCTGTGAAGAGTCACCAGTGCTGGAGC  231

seq1  AGGAGGCAGTGGCTTTCCTTTCTTATCCATGAAGATCATCTCTACAGTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGTGGCTTTCCTTTCTTATCCATGAAGATCATCTCTACAGTAA  281

seq1  TGAGGAGACCAAATCAAAATTCC-TTCTAGAATGGGAAAGTAATGATATC  348
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAGGAGACCAAATCAAAATTCCTTTCTAGAATGGGAAAGTAATGATATC  331

seq1  TGAAAACCAACCTTCT-AAAAGTAAGAGCACCAGTAAAAATGGTCCAAAT  397
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGAAAACCAACCTTCTAAAAAGTAAGAGCACCAGTAAAAATGGTCCAAAT  381

seq1  CAACATTTTCATAAAACTGGAAACAAAGGACCACCGTTTAAGGAGGATCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTTCATAAAACTGGAAACAAAGGACCACCGTTTAAGGAGGATCT  431

seq1  ATTAAGGAAAACCCCTCAATTTGTGTTTTGGTAAGAACACAAATCTTTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGAAAACCCCTCAATTTGTGTTTTGGTAAGAACACAAATCTTTGA  481

seq1  CATTATTTGTTTGATTCTCATAGGCCTTGCCTTGCATTCAGGGCAGCCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGTTTGATTCTCATAGGCCTTGCCTTGCATTCAGGGCAGCCTT  531

seq1  CAAAAGCACTAGCTTTACACCATGGCACTTGGAAGGTAGTCGTGCTCACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCACTAGCTTTACACCATGGCACTTGGAAGGTAGTCGTGCTCACC  581

seq1  ACCATCTCTTGAAGGCAGTCAGAGTACCCTGGTACTTGGTGTTATTCTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTTGAAGGCAGTCAGAGTACCCTGGTACTTGGTGTTATTCTAA  631

seq1  GAGACCCTAGATACAAAGCCAGTCTGAAGTTATGGCAGACAAACTGATGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTAGATACAAAGCCAGTCTGAAGTTATGGCAGACAAACTGATGT  681

seq1  GAATTGTGATCATTTGAGCTGCTTGACAACAAAGAGGAAAAGTTCCATTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTGATCATTTGAGCTGCTTGACAACAAAGAGGAAAAGTTCCATTC  731

seq1  ACCAGACATCTTCACTTTATCTGATTCAGAGTTCATCCAGTGAGAATTC  796
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACATCTTCACTTTATCTGATTCAGAGTTCATCCAGTGAGAATTC  780