BAC Information

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BAC

Clone NameB6Ng01-035D13
Chromosome2 (Build37)
Map Location 71,190,550 - 71,322,845
singlet/doubletdoublet
Overlap geneSlc25a12, Hat1, LOC100040177, Metapl1
Upstream geneMyo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1, Mettl8, 4833418A01Rik, Cybrd1, Dync1i2, LOC667528
Downstream geneLOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035D13.bB6Ng01-035D13.g
ACCDH863751DH863752
length961759
definitionDH863751|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D13, 5' end.DH863752|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,321,867 - 71,322,845)(71,190,550 - 71,191,329)
sequence
gaattcattcatcagtattcattttagtatgcatatctaagtggcaacag
ttactgttaatggtttaacaatataatactaacatactaaaaaaaataat
ggttcctaagactcatcaaataattggtcagcccttacctattaattatc
cttttgttttttaaaaaattcaacacaagccaggcagtgctcaccaatac
ctttaatcccagcactcaggaggcagaggcaggtgaatttctgagttcga
ggccagcctggtctacagagcaagttccaggatagtcagggctacacaga
gaaaccctgtctcaaaaacaaaaacaaaagaattcggcacagaatttata
gtaaaacaagatccataaggtccactgcatttgcttgacttgtttcacct
gctgttttaaacaaattctcttttttctttctagtaatttgcttgtttgg
gaaacttccttctttgtcccttatatttccaccattcgggaacctccaga
acttctgacttttggttgtgagcctgagcctgtaagagctcagccctgta
gctctaacttttattatcatgtaaaaacattaattacccgacttaacaaa
tcgcttctccattctcttgtcctcacacttttcactttgggggtaggaca
gccaggctgggttgattaaaggtaacaagacaggattgcaatttaaaggg
ggggaggaaccccaacccccaatgggatttgtcttgaagaatgaaaccca
aacccaaaagaaaacaggtgaaatagccattgaatttgcggccctggtga
tcaacccttttgccccctacatctggcagcccttagttccccagggcacg
cttggtgcctagggcactgctcccatgtctgaccagccgggtacacaagc
cactagctataaagagacgcagtaacatcaggctggcgggcacagcgtct
gaagacacaca
gaattcagttgttggagctagaaagatggctcagcagtgagagtactcac
ttccctttagggtttagtttccagcagccatatcagggagcacaaaacca
cctatacctccagctccagcagacctgatgccctcttccggcctctgcta
gctactgtattcacatgcacatacccacatacatatatgtatatatatat
atatacacatacatacatatatacatatatgtaatatatacatatataat
ttaaaataaaaatatttttaaaaactgtgaagaattttgaatagataacc
agaatatgtatatattttaattgttttgttttattttttatttttgttgt
ttttgagacaacaaaactcccttgttgctctggctgtcctggaactcact
atgtagaccaggctgtccttgaactcagaaattaatgtaacaagatcaaa
ctttttaaaatttattttatttttactatatgtaagtacactgtagctgt
cttcagacactccagaagagggagtcagatctcattacggatggttgtga
gccaccatgtggttgctgggatttgaactcaggacctttggaagacagcc
ggtgctcttacccactgagccatctcaccagccccaactttaaaaaaaat
acccttatcaaactgaggtccattctagaaaactactttttagccagaat
ctgggtatcaatctgttgtgtcattttagtcatcatagtccgtgctgggt
accataagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_71321867_71322845
seq2: B6Ng01-035D13.b_47_1007 (reverse)

seq1  TGTGTGTCTTGTCAGACAGCCTGTGCCTTTCGCAGGCCTGATGGTTACCT  50
      |||||||||  ||||||   |||||||   |||  ||||||| |||| ||
seq2  TGTGTGTCT--TCAGAC--GCTGTGCC---CGCCAGCCTGAT-GTTA-CT  41

seq1  GCTGTCTCTTTTTATAGCCTCTGTGTGCTTTGTTGTTACCCGGCTGGTCA  100
      || |||||  ||||||||      |||  ||||   ||||||||||||||
seq2  GC-GTCTC--TTTATAGC----TAGTGGCTTGT--GTACCCGGCTGGTCA  82

seq1  GACATGTGTAGCAGTGCCCTAGGGCACCAAGCGTGCCCTGGGGGAGCTAA  150
      |||||| | |||||||||||| ||||||||||||||||| ||||| ||||
seq2  GACATG-GGAGCAGTGCCCTA-GGCACCAAGCGTGCCCT-GGGGAACTAA  129

seq1  GTGCTGCCAGATGTAGGGGGC-AAAGGGTTGATTCACAGGGCCGCAATTT  199
      | ||||||||||||||||||| |||||||||||   ||||||||||| ||
seq2  GGGCTGCCAGATGTAGGGGGCAAAAGGGTTGATCACCAGGGCCGCAAATT  179

seq1  CAATGGCTAATTTCACCTGTTTTCTTTTGGGTTTGGGTTTCATTCTTCAA  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCT-ATTTCACCTGTTTTCTTTTGGGTTTGGGTTTCATTCTTCAA  228

seq1  GACAAAT-CCATTTGGGGTTGGGGTTCCTTCCCCCCTTTAAATTGCAATC  298
      ||||||| ||||| ||||||||||||||| ||||||||||||||||||||
seq2  GACAAATCCCATTGGGGGTTGGGGTTCCTCCCCCCCTTTAAATTGCAATC  278

seq1  CTGTCTTGTTACCTATAATC-ACCCAGCCTGGCTGTCCTACCCCCAAAGT  347
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  CTGTCTTGTTACCTTTAATCAACCCAGCCTGGCTGTCCTACCCCCAAAGT  328

seq1  G-AAAGTGTGAGGACAAGAGAATGGAGAAGCGATTTGTTAAGTCGGGTAA  396
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGTGAGGACAAGAGAATGGAGAAGCGATTTGTTAAGTCGGGTAA  378

seq1  TTAATGTTTTTACATGATAATAAAAGTTAGAGCTACAGGGCTGAGCTCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTTTTACATGATAATAAAAGTTAGAGCTACAGGGCTGAGCTCTT  428

seq1  ACAGGCTCAGGCTCACAACCAAAAGTCAGAAGTTCTGGAGGTTCCCGAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCAGGCTCACAACCAAAAGTCAGAAGTTCTGGAGGTTCCCGAAT  478

seq1  GGTGGAAATATAAGGGACAAAGAAGGAAGTTTCCCAAACAAGCAAATTAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAATATAAGGGACAAAGAAGGAAGTTTCCCAAACAAGCAAATTAC  528

seq1  TAGAAAGAAAAAAGAGAATTTGTTTAAAACAGCAGGTGAAACAAGTCAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAAAAAAGAGAATTTGTTTAAAACAGCAGGTGAAACAAGTCAAG  578

seq1  CAAATGCAGTGGACCTTATGGATCTTGTTTTACTATAAATTCTGTGCCGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCAGTGGACCTTATGGATCTTGTTTTACTATAAATTCTGTGCCGA  628

seq1  ATTCTTTTGTTTTTGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTGTTTTTGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGACT  678

seq1  ATCCTGGAACTTGCTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGAACTTGCTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCA  728

seq1  CCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTATTGGTGAGCACTGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTATTGGTGAGCACTGC  778

seq1  CTGGCTTGTGTTGAATTTTTTAAAAAACAAAAGGATAATTAATAGGTAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGTGTTGAATTTTTTAAAAAACAAAAGGATAATTAATAGGTAAG  828

seq1  GGCTGACCAATTATTTGATGAGTCTTAGGAACCATTATTTTTTTTAGTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCAATTATTTGATGAGTCTTAGGAACCATTATTTTTTTTAGTAT  878

seq1  GTTAGTATTATATTGTTAAACCATTAACAGTAACTGTTGCCACTTAGATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTATTATATTGTTAAACCATTAACAGTAACTGTTGCCACTTAGATA  928

seq1  TGCATACTAAAATGAATACTGATGAATGAATTC  979
      |||||||||||||||||||||||||||||||||
seq2  TGCATACTAAAATGAATACTGATGAATGAATTC  961

seq1: chr2_71190550_71191329
seq2: B6Ng01-035D13.g_66_824

seq1  GAATTCAGTTGTTGGAGCTAGAAAGATGGCTCAGCAGTGAGAGTACTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGTTGGAGCTAGAAAGATGGCTCAGCAGTGAGAGTACTCAC  50

seq1  TTCCCTTTAGGGTTTAGTTTCCAGCAGCCATATCAGGGAGCACAAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTAGGGTTTAGTTTCCAGCAGCCATATCAGGGAGCACAAAACCA  100

seq1  CCTATACCTCCAGCTCCAGCAGACCTGATGCCCTCTTCCGGCCTCTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACCTCCAGCTCCAGCAGACCTGATGCCCTCTTCCGGCCTCTGCTA  150

seq1  GCTACTGTATTCACATGCACATACCCACATACATATATGTATATATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGTATTCACATGCACATACCCACATACATATATGTATATATATAT  200

seq1  ATATACACATACATACATATATACATATATGTAATATATACATATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACATACATACATATATACATATATGTAATATATACATATATAAT  250

seq1  TTAAAATAAAAATATTTTTAAAAACTGTGAAGAATTTTGAATAGATAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAAAATATTTTTAAAAACTGTGAAGAATTTTGAATAGATAACC  300

seq1  AGAATATGTATATATTTTAATTGTTTTGTTTTATTTTTTATTTTTGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGTATATATTTTAATTGTTTTGTTTTATTTTTTATTTTTGTTGT  350

seq1  TTTTGAGACAACAAAACTCCCTTGTTGCTCTGGCTGTCCTGGAACTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAACAAAACTCCCTTGTTGCTCTGGCTGTCCTGGAACTCACT  400

seq1  ATGTAGACCAGGCTGTCCTTGAACTCAGAAATTAATGTAACAAGATCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACCAGGCTGTCCTTGAACTCAGAAATTAATGTAACAAGATCAAA  450

seq1  CTTTTTAAAATTTATTTTATTTTTACTATATGTAAGTACACTGTAGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAATTTATTTTATTTTTACTATATGTAAGTACACTGTAGCTGT  500

seq1  CTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTACGGATGGTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTACGGATGGTTGTGA  550

seq1  GCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGT  600
      |||||||||||||||||||||||||||||||||||||| |||||| ||| 
seq2  GCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGA-CAG-  598

seq1  CGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCAAACTTTAAAAAA  650
      | ||||||||||||||||||||||||||||||||||| ||||||  ||||
seq2  CCGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCC-AACTTT--AAAA  645

seq1  AAAATACACATAACCAAAACTGAGGTCACATATCTAGAAAAACTACTTTT  700
      ||||||| | || |  ||||||||||| ||| ||||| ||||||||||||
seq2  AAAATACCCTTATC--AAACTGAGGTC-CAT-TCTAG-AAAACTACTTTT  690

seq1  TAAGCCAGAAATCTGTGGTAATCAAATCTGTTTGTGTCATTTTTATGTTC  750
      | |||||| |||||| ||| ||| |||||| |||||||||||   |  ||
seq2  T-AGCCAG-AATCTG-GGT-ATC-AATCTG-TTGTGTCATTT---TAGTC  731

seq1  ATCATAAGTCCCGTGCTGGGCACCATAAGC  780
      ||||| ||| |||||||||| |||||||||
seq2  ATCAT-AGT-CCGTGCTGGGTACCATAAGC  759