BAC Information

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BAC

Clone NameB6Ng01-035G12
Chromosome2 (Build37)
Map Location 45,606,226 - 45,699,234
singlet/doubletdoublet
Overlap geneLOC100041337, LOC666604
Upstream geneGtdc1, Zeb2, LOC100042661
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035G12.bB6Ng01-035G12.g
ACCDH863877DH863878
length1,0651,021
definitionDH863877|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G12, 5' end.DH863878|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,698,137 - 45,699,234)(45,606,226 - 45,607,268)
sequence
gaattcttttttcgttctggctgatgtaatcttctccatttgctgtctgc
ataaaacaggagctatggttgcaacaggaaaagactgaaacaatatttct
gcatataatatatttcttgaatttatttgcacatatttttaagttaaaat
acatgatagggttaagcatatatatttacttataaatgagatcttaaaac
atgtgtttccaggagtctgtaattagatatgttttaaggacagaaattta
ttttccttttaaattatactgattgttctgggtatccgaaactttgaatg
gaggtgctagtaaagacacttatttaaattctactagtttaactctcaca
ctgttttcatagaggtgtcagtagcaaaaagaagacatggaagtttaaat
taaggcctgagttaccatctctactcaagtggattttacctactacacat
atatatatatatatatatatatatatatatatatatatatatatacatac
atacatatatattattggagcttgtaatacatcagagaatatttcaggtc
ttatggtagcattctatgttatgaacatgcagctctctgtgaatcgtgat
gtgaaacttagcattcctgggtaagctaagaacaattatatgttcttagt
aagtatgaataaaatatgatacctgtctcttcactgtgaggctattgttt
tgattctaatccctccaataataatgtttatgggtaccttcctaaaaaat
tgctcaaatccagactcaaatccagttctagagattcttataagaaatga
atgagatgagaacaaactcaatttaaatattcactataactttcctacgc
cattgccctgcatatcataaatcacatttgagtagacagctagcagacct
acaaatattaatatgaatatgagcttacgatgtttctagtcttagaatat
tttattagatgataataaatggtacctatcatagtcatactttaagagcc
agaacattgcttctcattgtgcatgaacactaggttctaaaaccaggatg
ttactatatggacag
gaattctgtagttgctgtcatcaactatttgtagcctgctaaaggtggct
gacagagacctgtgtaatgcagaaagtcctggcaagggctccaggttcca
gaggataaatttaggtaagtgaagaatgccttgaggaaatggagcatcta
agtgtttcttgggagactgaaaggtctccagtggtgatgagtgggttcag
aatgaattgtccatgctacaagacaaagaattctgcatggacctggagta
cccgtgtctcttgagcatcaagtgcctgagtcagatgacacaaagctagc
ttctaggtgataaggagcagggttctgtgactcttcccaagattcgtcct
ttcctatttactgccacttctgtagtagagtctcaccatgttttgtgatt
tttttagtagtatcattggtcatctcaaatttttgattagaaagacccac
atttggttttccaggcaagctttaattcatgactatgaccctatgagtag
ttattaatagtttttaattgcctatctcagagttaacatccaaaccccat
ttttttgtattgccttctgaaatttattttaccattgccctttccatctc
aattcatgggtaatctatttcttaataatatattatttactcagattctc
catgatgcccagtacaggatctctgatatctatatctgttattgataccc
cactgggattatttaagtggtctcaaaattagtccacagcttcctattct
gagccccaaaagcccagggctgccatcttaatccttaagaaattgtgtac
tttaaaggtccaggtcccttaataagaagagttcagtgaagtggcctcta
tcgcactcattactggtgacttatttctttagtatttattatgaatttgt
cactcatgtcactagctctttgttgctaacaataacagctgcacactcaa
ggtggtgcttgtttgcttgttcactgtgggacattgactctggatatttc
acattgaatgtgcatttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45698137_45699234
seq2: B6Ng01-035G12.b_45_1109 (reverse)

seq1  CTGTCCATAATATGTAACATCACTGTGTTTTCTAGGAACCTAAGTGTTCA  50
      |||||||| ||| |||||||| ||| |||||    |||||| ||||||||
seq2  CTGTCCAT-ATA-GTAACATC-CTG-GTTTT---AGAACCT-AGTGTTCA  42

seq1  TGCAACAATGAGAAGCAATGGTTCTGTGCTCTTTAAAGTATGACCTATGG  100
      ||| ||||||||||||||| |||||| |||| ||||||||||| |||| |
seq2  TGC-ACAATGAGAAGCAAT-GTTCTG-GCTC-TTAAAGTATGA-CTAT-G  86

seq1  ATAGGGTAACCATTTTATTTATCATCTAAATAAAAATATTTCTAAGAACT  150
      |||||   |||||||   |||||||||||   |||||| ||||||| |||
seq2  ATAGG--TACCATTT--ATTATCATCTAA--TAAAATA-TTCTAAG-ACT  128

seq1  AGAAACATCGTAAGCTCATATTTCATATTAATATTTGTAGGTCTGCTTAG  200
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  AGAAACATCGTAAGCTCATA-TTCATATTAATATTTGTAGGTCTGC-TAG  176

seq1  CTGTCTACTCAAATTGTGATTTATGATATGCAGGGCAATGGCGTAGGAAT  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  CTGTCTACTCAAA-TGTGATTTATGATATGCAGGGCAATGGCGTAGGAAA  225

seq1  GTTATAAGTGATTATTTTAAAATTTGAGTTTGTTTCTCATCTCATTCATT  300
      ||||| ||||| |||||   || ||||||||| |||||||||||||||||
seq2  GTTAT-AGTGAATATTT---AAATTGAGTTTG-TTCTCATCTCATTCATT  270

seq1  TTCTTTATAAGAATCTCTAGAACTGGATTTGAGTTCTGGATTTGAGCAAT  350
      |   ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  T--CTTATAAGAATCTCTAGAACTGGATTTGAG-TCTGGATTTGAGCAAT  317

seq1  TGTTTAGGAAGGTACCAATAAACATTATTATTGGAGGGATTAGAATCAAA  400
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTTAGGAAGGTACCCATAAACATTATTATTGGAGGGATTAGAATCAAA  367

seq1  ACAATAGCCTCACAGTGAAGAGACAGGTATCATATTTTATTCATACTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGCCTCACAGTGAAGAGACAGGTATCATATTTTATTCATACTTAC  417

seq1  TAAGAACATATAATTGTTCTTAGCTTACCCAGGAATGCTAAGTTTCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATATAATTGTTCTTAGCTTACCCAGGAATGCTAAGTTTCACAT  467

seq1  CACGATTCACAGAGAGCTGCATGTTCATAACATAGAATGCTACCATAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATTCACAGAGAGCTGCATGTTCATAACATAGAATGCTACCATAAGA  517

seq1  CCTGAAATATTCTCTGATGTATTACAAGCTCCAATAATATATATGTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATATTCTCTGATGTATTACAAGCTCCAATAATATATATGTATGT  567

seq1  ATGTATATATATATATATATATATATATATATATATATATATATATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATATATATATATATATATATATATATATATATATATATATAT  617

seq1  GTGTAGTAGGTAAAATCCACTTGAGTAGAGATGGTAACTCAGGCCTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTAGGTAAAATCCACTTGAGTAGAGATGGTAACTCAGGCCTTAAT  667

seq1  TTAAACTTCCATGTCTTCTTTTTGCTACTGACACCTCTATGAAAACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTCCATGTCTTCTTTTTGCTACTGACACCTCTATGAAAACAGTG  717

seq1  TGAGAGTTAAACTAGTAGAATTTAAATAAGTGTCTTTACTAGCACCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTAAACTAGTAGAATTTAAATAAGTGTCTTTACTAGCACCTCCA  767

seq1  TTCAAAGTTTCGGATACCCAGAACAATCAGTATAATTTAAAAGGAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTTTCGGATACCCAGAACAATCAGTATAATTTAAAAGGAAAATA  817

seq1  AATTTCTGTCCTTAAAACATATCTAATTACAGACTCCTGGAAACACATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTCCTTAAAACATATCTAATTACAGACTCCTGGAAACACATGT  867

seq1  TTTAAGATCTCATTTATAAGTAAATATATATGCTTAACCCTATCATGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATCTCATTTATAAGTAAATATATATGCTTAACCCTATCATGTAT  917

seq1  TTTAACTTAAAAATATGTGCAAATAAATTCAAGAAATATATTATATGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTAAAAATATGTGCAAATAAATTCAAGAAATATATTATATGCAG  967

seq1  AAATATTGTTTCAGTCTTTTCCTGTTGCAACCATAGCTCCTGTTTTATGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGTTTCAGTCTTTTCCTGTTGCAACCATAGCTCCTGTTTTATGC  1017

seq1  AGACAGCAAATGGAGAAGATTACATCAGCCAGAACGAAAAAAGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAAATGGAGAAGATTACATCAGCCAGAACGAAAAAAGAATTC  1065

seq1: chr2_45606226_45607268
seq2: B6Ng01-035G12.g_67_1087

seq1  GAATTCTGTAGTTGCTGTCATCAACTATTTGTAGCCTGCTAAAGGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGTTGCTGTCATCAACTATTTGTAGCCTGCTAAAGGTGGCT  50

seq1  GACAGAGACCTGTGTAATGCAGAAAGTCCTGGCAAGGGCTCCAGGTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACCTGTGTAATGCAGAAAGTCCTGGCAAGGGCTCCAGGTTCCA  100

seq1  GAGGATAAATTTAGGTAAGTGAAGAATGCCTTGAGGAAATGGAGCATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAAATTTAGGTAAGTGAAGAATGCCTTGAGGAAATGGAGCATCTA  150

seq1  AGTGTTTCTTGGGAGACTGAAAGGTCTCCAGTGGTGATGAGTGGGTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCTTGGGAGACTGAAAGGTCTCCAGTGGTGATGAGTGGGTTCAG  200

seq1  AATGAATTGTCCATGCTACAAGACAAAGAATTCTGCATGGACCTGGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTGTCCATGCTACAAGACAAAGAATTCTGCATGGACCTGGAGTA  250

seq1  CCCGTGTCTCTTGAGCATCAAGTGCCTGAGTCAGATGACACAAAGCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGTCTCTTGAGCATCAAGTGCCTGAGTCAGATGACACAAAGCTAGC  300

seq1  TTCTAGGTGATAAGGAGCAGGGTTCTGTGACTCTTCCCAAGATTCGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTGATAAGGAGCAGGGTTCTGTGACTCTTCCCAAGATTCGTCCT  350

seq1  TTCCTATTTACTGCCACTTCTGTAGTAGAGTCTCACCATGTTTTGTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTTACTGCCACTTCTGTAGTAGAGTCTCACCATGTTTTGTGATT  400

seq1  TTTTTAGTAGTATCATTGGTCATCTCAAATTTTTGATTAGAAAGACCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTAGTATCATTGGTCATCTCAAATTTTTGATTAGAAAGACCCAC  450

seq1  ATTTGGTTTTCCAGGCAAGCTTTAATTCATGACTATGACCCTATGAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTTTCCAGGCAAGCTTTAATTCATGACTATGACCCTATGAGTAG  500

seq1  TTATTAATAGTTTTTAATTGCCTATCTCAGAGTTAACATCCAAACCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATAGTTTTTAATTGCCTATCTCAGAGTTAACATCCAAACCCCAT  550

seq1  TTTTTTGTATTGCCTTCTGAAATTTATTTTACCATTGCCCTTTCCATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTATTGCCTTCTGAAATTTATTTTACCATTGCCCTTTCCATCTC  600

seq1  AATTCAT-GGTAATCTATTTCTTAATAATATATTATTTACTCAGATTCTC  649
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGGGTAATCTATTTCTTAATAATATATTATTTACTCAGATTCTC  650

seq1  CATGATGCCCAGTACAGGATCTCTGATATCTATATCTGTTATTGATACCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGCCCAGTACAGGATCTCTGATATCTATATCTGTTATTGATACCC  700

seq1  CACTTGGATTATTTAAGTGGTCTCAAAATTAGTCCACAGCTTCCTATTCT  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGATTATTTAAGTGGTCTCAAAATTAGTCCACAGCTTCCTATTCT  750

seq1  GAGCCCCAAAAGCCCCAGGGCTGCCATCTTAATCCTAAGAAAATTGTGTA  799
      |||||||||||| ||||||||||||||||||||||| |  ||||||||||
seq2  GAGCCCCAAAAG-CCCAGGGCTGCCATCTTAATCCTTAAGAAATTGTGTA  799

seq1  CTTTAAAGGTCCAAGTCCCTTTATAAG-AGAGTTTCAGTGAGTTGGCCTC  848
      ||||||||||||| ||||||| ||||| |||| ||||||||  |||||||
seq2  CTTTAAAGGTCCAGGTCCCTTAATAAGAAGAG-TTCAGTGAAGTGGCCTC  848

seq1  TATCGCACTCATTACCTGTGACCTTATTTCTTTAGTTATTTTATTATTGA  898
      |||||||||||||||  |||| ||||||||||||||   ||||||| |||
seq2  TATCGCACTCATTACTGGTGA-CTTATTTCTTTAGT--ATTTATTA-TGA  894

seq1  TTTTGTCACTCCATTGTCACTAAGCTCTTTGTTTGCTAACAAATAACAGC  948
       ||||||||||   ||||||| ||||||||| |||||||| |||||||||
seq2  ATTTGTCACTC--ATGTCACT-AGCTCTTTG-TTGCTAAC-AATAACAGC  939

seq1  TGCACACTCCAGGGTGGTGCCTTTGTTCTGCCTGTTTCCACTGTGGGGAC  998
      |||||||| || ||||||||  ||||| ||| ||||  |||||| |||||
seq2  TGCACACT-CAAGGTGGTGC--TTGTT-TGCTTGTT--CACTGT-GGGAC  982

seq1  ATTGTACTCTTGGATATTTTCACATTGAATGTTGTCATTTTCCTG  1043
      |||| |||| |||||| |||||||||||||||   || |||||||
seq2  ATTG-ACTC-TGGATA-TTTCACATTGAATGT--GCA-TTTCCTG  1021