BAC Information

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BAC

Clone NameB6Ng01-035H12
Chromosome2 (Build37)
Map Location 53,927,891 - 54,082,605
singlet/doubletdoublet
Overlap geneRprm
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
Downstream geneLOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035H12.bB6Ng01-035H12.g
ACCDH863923DH863924
length1,0641,018
definitionDH863923|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H12, 5' end.DH863924|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,081,499 - 54,082,605)(53,927,891 - 53,928,927)
sequence
gaattcactatacttactaccagtagaagctacctatattgaactcagct
atccattaccatatccacatagacatatttactgcctttccaaggtattg
ttttgctcaaatgcataaagttatgttttagtgttcttttttctaggcaa
actaggcaaactgcattatctttcctgtacagactgtacattccaaccat
aacttagcccttggattttccattacattacttaagttcatagaaatttg
gaataataattggacacattttctcaagaggtttgaatgattcttggtgg
agaccaagaactgtacctttcagaagacaatagaagcctggatttcaata
ttgtttcgaatattgacttttcatgccttgcactaaaaacgtactacaaa
agctttaatttctcaaaaccaaaatcagaattatttatttttatctaaca
gacttctcttgaagttaggaaacacttcagtgaggagaaaataattcgta
gacacttaacataattttcaataataatagcacaaatgaaaatctgattt
ttaaaattaattaactcataaattttggagaactgaagctaggcctcata
cacacacgctagcactctgcaacagaaccttattcccacctcagattcta
gaaagggagctatgaagaagtgcatttaaacattagactgagaccctcaa
ttctcgttttagacagttataagctatgaaataaaatatgaagctctgaa
ctatttattggggcatatttaattatttaaacttgtactgcactgttctt
ctctacattagagacagtaattggaaacagaaggaatttaaataaatact
agttgttactgctagtctctatttaagctctttcatttggatgtgtgcat
tttgatgtgatatacataagtgggtgtgcttcaaagatcagagatggggg
tggtgatgtacataatcagtgtagtgctgatctccagcacgctaaaatgc
aatcacatgaatacgaaagcgagaagtctggagtttcttcaagaatccac
cagccacatatgct
gaattcactcttgcacctgcgtacaaggcttgtttactagttaggcacag
cggaggcccgcgccatcttataatggcgattgctcgcggcacacacggct
ctcctcagagattactggcagcatgcacgcgattgctcgcggcacggctc
tccacacatatctaagtaaaaaacagactttttattaagtataacttaat
aaaactcctgttcttaagaataaaaaagatagaaagaaaaaaggcttaaa
ggttagaatccacaagagtccagttccagtaggctttgggtcccaatgag
gaggtgaggaaacagcgatggaaagagactaacacaatctaagggtgaat
cctgatagctggtgtgtttattgaaaaaaagtgtatgtgaagcgggtgag
gggagagctacaacttttaaactctatatttgcatagttacttattcacg
ggcaatgttgaaagcagacttgatgattccaagaagtgtacgagcttatc
acagatggtttttaacctgttttagccctgatttcaacatccagaatgaa
agcagtaatcaactttattacaatatttttctttaaaggaaaagcaatgc
agctaagtccctattgatttttaaggttcagcaatccctccaggtgcccc
ctttatccttcctcctgaatgctctcagccctttatggtcagaagggtac
caaacagtaagaaacaaacctataaggagcattttcactcctcaaggtgc
ctggtgcagtggttgtaccatgtagccttcctatgtgtcgtagtcttaca
tatgggcctgttctcatacactccccaaaggggaggtcagacatctaatt
ttccatatgccatatcatcctgattccttcaggtttgtttctgtatatgg
cagaggggatcagccagtctactctacagaatctgcttcttatggggcat
acgatctggcatcatgctgatgtcagtcacatactctcagattgctgagg
tactattctatactatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54081499_54082605
seq2: B6Ng01-035H12.b_46_1109 (reverse)

seq1  AGCATATGTGTGCTGGTGGGGGAATTCTGTGAAAGAGAAACTCCAGACTC  50
      |||||||||| ||||||||    ||||| |||   |||||||||||||| 
seq2  AGCATATGTG-GCTGGTGG----ATTCT-TGA---AGAAACTCCAGACT-  40

seq1  TCTGCTTTTCTGTATTTCATTTGTTGATTGCATTTTTAGCGTGCTGGGAA  100
      |||   |||| ||| |||||    |||||||| ||||||||||||     
seq2  TCTCGCTTTC-GTA-TTCAT---GTGATTGCA-TTTTAGCGTGCT-----  79

seq1  GGAAATCAGGCACTAAACACTGATTATGTAACATCACCCACCCCCAATTC  150
      ||| |||| |||||  ||||||||||||| |||||| |||||||||  ||
seq2  GGAGATCA-GCACT--ACACTGATTATGT-ACATCA-CCACCCCCA--TC  122

seq1  TCTGGAATCCTTTTGAAAGCACACCCACTTATGTATAATTCCACAATCAA  200
      ||||  |||  |||| |||||||||||||||||||||    ||| |||||
seq2  TCTG--ATC--TTTG-AAGCACACCCACTTATGTATA---TCAC-ATCAA  163

seq1  AATGCAACCACATTCCAAATGGAAAAGAGCTTAAATAGAGACTAGCAGTT  250
      ||||||  |||| ||||||||  ||||||||||||||||||||||||| |
seq2  AATGCA--CACA-TCCAAATG--AAAGAGCTTAAATAGAGACTAGCAG-T  207

seq1  AACAACTAGTATTTATTTAAATTCCCTTCTGTTTCCAATTACTGTCTCTA  300
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACAACTAGTATTTATTTAAATT-CCTTCTGTTTCCAATTACTGTCTCTA  256

seq1  ATGTAGAGAAGAACAGTGCAGTACAAGTTTAAATAATTAAATATGCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGAAGAACAGTGCAGTACAAGTTTAAATAATTAAATATGCCCCA  306

seq1  ATAAATAGTTCAGAGCTTCATATTTTATTTCATAGCTTATAACTGTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGTTCAGAGCTTCATATTTTATTTCATAGCTTATAACTGTCTAA  356

seq1  AACGAGAATTGAGGGTCTCAGTCTAATGTTTAAATGCACTTCTTCATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGAATTGAGGGTCTCAGTCTAATGTTTAAATGCACTTCTTCATAGC  406

seq1  TCCC-TTCTAGAATCTGAGGTGGGAATAAGGTTCTGTTGCAGAGTGCTAG  499
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTAGAATCTGAGGTGGGAATAAGGTTCTGTTGCAGAGTGCTAG  456

seq1  CGTGTGTGTATGAGGCCTAGCTTCAGTTCTCCAAAATTTATGAGTTAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTATGAGGCCTAGCTTCAGTTCTCCAAAATTTATGAGTTAATT  506

seq1  AATTTTAAAAATCAGATTTTCATTTGTGCTATTATTATTGAAAATTATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAAATCAGATTTTCATTTGTGCTATTATTATTGAAAATTATGT  556

seq1  TAAGTGTCTACGAATTATTTTCTCCTCACTGAAGTGTTTCCTAACTTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCTACGAATTATTTTCTCCTCACTGAAGTGTTTCCTAACTTCAA  606

seq1  GAGAAGTCTGTTAGATAAAAATAAATAATTCTGATTTTGGTTTTGAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCTGTTAGATAAAAATAAATAATTCTGATTTTGGTTTTGAGAAA  656

seq1  TTAAAGCTTTTGTAGTACGTTTTTAGTGCAAGGCATGAAAAGTCAATATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTTTTGTAGTACGTTTTTAGTGCAAGGCATGAAAAGTCAATATT  706

seq1  CGAAACAATATTGAAATCCAGGCTTCTATTGTCTTCTGAAAGGTACAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACAATATTGAAATCCAGGCTTCTATTGTCTTCTGAAAGGTACAGTT  756

seq1  CTTGGTCTCCACCAAGAATCATTCAAACCTCTTGAGAAAATGTGTCCAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTCCACCAAGAATCATTCAAACCTCTTGAGAAAATGTGTCCAAT  806

seq1  TATTATTCCAAATTTCTATGAACTTAAGTAATGTAATGGAAAATCCAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCCAAATTTCTATGAACTTAAGTAATGTAATGGAAAATCCAAGG  856

seq1  GCTAAGTTATGGTTGGAATGTACAGTCTGTACAGGAAAGATAATGCAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTTATGGTTGGAATGTACAGTCTGTACAGGAAAGATAATGCAGTT  906

seq1  TGCCTAGTTTGCCTAGAAAAAAGAACACTAAAACATAACTTTATGCATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTTTGCCTAGAAAAAAGAACACTAAAACATAACTTTATGCATTT  956

seq1  GAGCAAAACAATACCTTGGAAAGGCAGTAAATATGTCTATGTGGATATGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAACAATACCTTGGAAAGGCAGTAAATATGTCTATGTGGATATGG  1006

seq1  TAATGGATAGCTGAGTTCAATATAGGTAGCTTCTACTGGTAGTAAGTATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGATAGCTGAGTTCAATATAGGTAGCTTCTACTGGTAGTAAGTATA  1056

seq1  GTGAATTC  1107
      ||||||||
seq2  GTGAATTC  1064

seq1: chr2_53927891_53928927
seq2: B6Ng01-035H12.g_69_1086

seq1  GAATTCACTCTTGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAG  50

seq1  CGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCT  100

seq1  CTCCTCAGAGATTACTGGCAGCATGCACGCGATTGCTCGCGGCACGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGAGATTACTGGCAGCATGCACGCGATTGCTCGCGGCACGGCTC  150

seq1  TCCACACATATCTAAGTAAAAAACAGACTTTTTATTAAGTATAACTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACATATCTAAGTAAAAAACAGACTTTTTATTAAGTATAACTTAAT  200

seq1  AAAACTCCTGTTCTTAAGAATAAAAAAGATAGAAAGAAAAAAGGCTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCTGTTCTTAAGAATAAAAAAGATAGAAAGAAAAAAGGCTTAAA  250

seq1  GGTTAGAATCCACAAGAGTCCAGTTCCAGTAGGCTTTGGGTCCCAATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAATCCACAAGAGTCCAGTTCCAGTAGGCTTTGGGTCCCAATGAG  300

seq1  GAGGTGAGGAAACAGCGATGGAAAGAGACTAACACAATCTAAGGGTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGGAAACAGCGATGGAAAGAGACTAACACAATCTAAGGGTGAAT  350

seq1  CCTGATAGCTGGTGTGTTTATTGAAAAAAAGTGTATGTGAAGCGGGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATAGCTGGTGTGTTTATTGAAAAAAAGTGTATGTGAAGCGGGTGAG  400

seq1  GGGAGAGCTACAACTTTTAAACTCTATATTTGCATAGTTACTTATTCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGCTACAACTTTTAAACTCTATATTTGCATAGTTACTTATTCACG  450

seq1  GGCAATGTTGAAAGCAGACTTGATGATTCCAAGAAGTGTACGAGCTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGTTGAAAGCAGACTTGATGATTCCAAGAAGTGTACGAGCTTATC  500

seq1  ACAGATGGTTTTTAACCTGTTTTAGCCCTGATTTCAACATCCAGAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGTTTTTAACCTGTTTTAGCCCTGATTTCAACATCCAGAATGAA  550

seq1  AGCAGTAATCAACTTTATTACAATATTTTTCTTTAAAGGAAAAGCAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAATCAACTTTATTACAATATTTTTCTTTAAAGGAAAAGCAATGC  600

seq1  AGCTAAGTCCCTATTGATTTTTAAGGTTCAGCAATCCCTCCAGGTGCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTCCCTATTGATTTTTAAGGTTCAGCAATCCCTCCAGGTGCCCC  650

seq1  CTTTATCCTTCCTCCTGAATGCTCTCAG-CCTTTATGGTCAGAA-GGTAC  698
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  CTTTATCCTTCCTCCTGAATGCTCTCAGCCCTTTATGGTCAGAAGGGTAC  700

seq1  CAAACAGTAAGAAACAAACCTATAA-GAGCAATTTTCACTCCTCAAGGTG  747
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  CAAACAGTAAGAAACAAACCTATAAGGAGC-ATTTTCACTCCTCAAGGTG  749

seq1  CCTGGTGCAGTGGTTGTACCATGTAGCCTTCCTATGTGTCGTAGTCTTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGCAGTGGTTGTACCATGTAGCCTTCCTATGTGTCGTAGTCTTAC  799

seq1  AATATGGGCCTGTTCTCATACACTCCCCAAAGGGGAGGTCCAGACATCTT  847
       |||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  -ATATGGGCCTGTTCTCATACACTCCCCAAAGGGGAGGT-CAGACATC-T  846

seq1  AATTTTTCCAATATGCCATATCATCCTGATTCCTTCAAGGTATGTTTCTG  897
      ||||||  | |||||||||||||||||||||||||| |||| ||||||||
seq2  AATTTT--CCATATGCCATATCATCCTGATTCCTTC-AGGTTTGTTTCTG  893

seq1  TATATGGCAGAGGGGGATCAAGCCAGTCTAACTCCTTAACAGAATCTGCT  947
      ||||||||||| ||||||| ||||||||||    ||  ||||||||||||
seq2  TATATGGCAGA-GGGGATC-AGCCAGTCTA----CTCTACAGAATCTGCT  937

seq1  TCTTATGGGGCATAACAGATCTTGCCATCCATGCTGTATGTCAGTCACAT  997
      ||||||||||||||   |||| || ||| ||||||| |||||||||||||
seq2  TCTTATGGGGCATA--CGATC-TGGCAT-CATGCTG-ATGTCAGTCACAT  982

seq1  ACTCTCAGAATATGCTGTAGGTACTATTCTATACTTATTA  1037
      |||||||||   ||||| |||||||||||||||| |||||
seq2  ACTCTCAGA--TTGCTG-AGGTACTATTCTATAC-TATTA  1018