BAC Information

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BAC

Clone NameB6Ng01-035K11
Chromosome2 (Build37)19 (Build37)
Map Location 142,776,219 - 142,776,83814,166,902 - 14,167,959
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035K11.bB6Ng01-035K11.g
ACCDH864063DH864064
length7061,011
definitionDH864063|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K11, 5' end.DH864064|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,219 - 142,776,838)(14,166,902 - 14,167,959)
sequence
gaattcttctacatgataaccaccagttgtgccagcaccatttgttgaaa
atgctgtcttttttccactggatggttttacctcccttgtcaaagatcaa
gtgaccataggtgtgtgagttcatttctgggtcttcaattctatttcatt
ggtctacctgtctgtcgctgtaccagtaccatgaagtttttatcacaatt
gctctgtagtacagcttgaagtcaggcatgatggttcccccagaggttct
tttactgttgagaataatttttgctatcctagtttttttgttattccaga
tgaatttgcaaattgcccttttaactcggtgaagaattgagttggaattt
tgatgggggttgcattgaatctgtagattgcttttggcaagatagccatt
tttactatattaatcttgccaatccatgagcatgagaaatctttccatct
tctgagatcttcaatttctttcttcagagacttaaagttcttatcataca
gatctttcacttccttagttagagtcactctaaggtattttatattattt
gtgactattgtaaagggtgttgtttccctaatttcgttctcatcctgttt
atcctttgtgtagagaaaaggtgactgatttgtttcgggtaattttatat
ccagctactgctttgaaactggtttatcaggtttaggagttttctggtgg
aatttt
gaattctcttcctgtgactaggtgaagatttttggaatctgtggatgaaa
tcgcacagtcaatgcaaagtgaatcagtggtctgaacagcaggtatgaag
gcagatggcatcaagaccagcctgggaaaggcccatttttcagccttctc
cactttctcacagacacagaatacaaattgcctggttaacttggtttggg
gaatagtgatcagaaaacagactaagcatcttgcagcttttcatcttcag
ggaaacaagcattctggtggcgaagggagttgggtttccacagaaggaag
ggtctaatgccttcttcattttcaaaagcaggaagaggtggaacaggcct
ggtgagccctctttcaaaataactgactttttctcattcaaatttgtcaa
ggctgccctggttacttggaacgcttgtaagtttagaaggtaaatgtcct
aaactgacagctgacctctgatcacagcaatttcttcaatatgacttttc
gtttaacatcttcctggcttagctgtcactctacacattctggaatttac
atttagcccaaacagacatagtataatttgtgtttcagaggaggcaagaa
tgaagtgattactataaatcaatacttaactctgaaagaaaagtaagttt
tttttatttagaggtaggattcactatggtgactcggctgtgtgcacttg
acagaaatttgagtgtgcatggaaataatatatcttatttcaacttaacc
acacacaaaaagcaaagaagcacatggtattttcattggatggagtctaa
aagctctttgtctacatagtaggtggatctccttatagaagttttttttt
ttatggatccttatatttagtcatcctcataccaccagggactatcattc
tctacagactttaagttccagctagatttgcatacttgattgataagcta
gatatattacttcacctatgaacaagggtaaaatgctgcaacacaaggac
aaacgagactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776219_142776838
seq2: B6Ng01-035K11.b_46_661 (reverse)

seq1  TTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAAC  50
      |||||||| |||||| ||||||||| |||||| |||||||||||||||||
seq2  TTTCTCTACACAAAGGATAAACAGGATGAGAACGAAATTAGGGAAACAAC  50

seq1  ACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAA  100
      ||||||  ||||||||||||||||||||||||| ||  | ||||||||||
seq2  ACCCTTTACAATAGTCACAAATAATATAAAATACCTTAGAGTGACTCTAA  100

seq1  CTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAA  150
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  CTAAGGAAGTGAAAGATCTGTATGATAAGAACTTTAAGTCTCTGAAGAAA  150

seq1  GAAATTAAAGAAGATCTCAGAAGATGGAAGGATCTCCCATGCTCATGGAT  200
      ||||||   |||||||||||||||||||| ||| || |||||||||||||
seq2  GAAATT---GAAGATCTCAGAAGATGGAAAGATTTCTCATGCTCATGGAT  197

seq1  TGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACA  250
      ||||| ||| || || ||||||||||||||||||||||||||||||||||
seq2  TGGCAAGATTAATATAGTAAAAATGGCTATCTTGCCAAAAGCAATCTACA  247

seq1  GATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTA  300
      |||||||||||| ||||||||||||||||||||||||||||| ||| |||
seq2  GATTCAATGCAACCCCCATCAAAATTCCAACTCAATTCTTCACCGAGTTA  297

seq1  GAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGC  350
       |||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAGG-GCAATTTGCAAATTCATCTGGAATAACAAAAAAACTAGGATAGC  346

seq1  AAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTG  400
      ||||| | |||||||   ||||||||||||||| |||| || ||||||||
seq2  AAAAATTATTCTCAACAGTAAAAGAACCTCTGGGGGAACCATCATGCCTG  396

seq1  ACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGG  450
      || | ||||| ||||||||||||||||||||||||||| |||||||||||
seq2  ACTTCAAGCTGTACTACAGAGCAATTGTGATAAAAACTTCATGGTACTGG  446

seq1  TATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAAT  500
      || || |||||||| ||||||||||| |||||||||||||||||||||||
seq2  TACAGCGACAGACAGGTAGACCAATGAAATAGAATTGAAGACCCAGAAAT  496

seq1  GAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCA  550
      |||| ||||||||||||||||||||||||| |||||||||| ||||||||
seq2  GAACTCACACACCTATGGTCACTTGATCTTTGACAAGGGAGGTAAAACCA  546

seq1  TCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGG  600
      ||||| |||| |||||||||||||||||||| ||||||||||||||||||
seq2  TCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGG  596

seq1  TTGTTATCATGTAGAAGAAT  620
      | ||||||||||||||||||
seq2  TGGTTATCATGTAGAAGAAT  616

seq1: chr19_14166902_14167959
seq2: B6Ng01-035K11.g_65_1075 (reverse)

seq1  AAGTCTTTCTGTGTTTGTCCTTTGGTGTTTGCAAGGCATTTTATAACACT  50
      ||||||      ||||||||||  ||| |||||  |||||||   || ||
seq2  AAGTCT-----CGTTTGTCCTT--GTG-TTGCA--GCATTTT---ACCCT  37

seq1  ATGTTCATTAGTGTTAGAAGATAAATAAT-TATCTAGCTTTATTCAAATC  99
       |||||||  |||         || |||| |||||||| ||||   ||||
seq2  -TGTTCATAGGTG---------AAGTAATATATCTAGC-TTAT--CAATC  74

seq1  AAAGTATGGCACAAATCTAGGCTGAGAAACTTAAATGTCTGTAAGAGAAG  149
       |||||||   |||||||| |||  | |||||||| |||||| |||||| 
seq2  -AAGTATG---CAAATCTA-GCT--GGAACTTAAA-GTCTGT-AGAGAA-  114

seq1  TGATGAGTTCGCTGTGTGGTATGAAGATGACTAAATATAGAGAATCCATT  199
      |||| || || ||| ||||||||| |||||||||||||| || ||||| |
seq2  TGAT-AG-TCCCTG-GTGGTATGAGGATGACTAAATATA-AGGATCCA-T  159

seq1  AAAAAAAAAAACTTCTATAAAGGAGATACCACTAACTATGTAGACAAAGG  249
      |||||||||||||||||| |||||||| ||||  |||||||||||||| |
seq2  AAAAAAAAAAACTTCTAT-AAGGAGAT-CCACCTACTATGTAGACAAA-G  206

seq1  AGTCTATAAGACTCAATCCAAAATGAAAATACCATGTGCTATCTTTGCTT  299
      || || | |||||| ||||  ||||||||||||||||||| ||||||| |
seq2  AG-CTTTTAGACTCCATCC--AATGAAAATACCATGTGCT-TCTTTGC-T  251

seq1  TTTTGTGTGTGGTTAAGTTGAAATAAGATATATTATTTCCATGCACACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTGTGGTTAAGTTGAAATAAGATATATTATTTCCATGCACACTC  301

seq1  AAATATCTGTCAAGTGCACACAGCCGAGTCACCATAGTGAATCCTACCTC  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGTCAAGTGCACACAGCCGAGTCACCATAGTGAATCCTACCTC  351

seq1  TAAATTAGAAAAACTTACTTTTCTTTCAGAGTTAAGTATTGATTTATAGT  449
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAAAAACTTACTTTTCTTTCAGAGTTAAGTATTGATTTATAGT  401

seq1  AATCACTTCATTCTTGCCTCCTCTGAAACACAAATTATACTATGTCTGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTCATTCTTGCCTCCTCTGAAACACAAATTATACTATGTCTGTT  451

seq1  T-GGCTAAATGTAAATTCCAGAATGTGTAGAGTGACAGCTAAGCCAGGAA  548
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAAATGTAAATTCCAGAATGTGTAGAGTGACAGCTAAGCCAGGAA  501

seq1  GATGTTAAACGAAAAGTCATATTGAAGAAATTGCTGTGATCAGAGGTCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAAACGAAAAGTCATATTGAAGAAATTGCTGTGATCAGAGGTCAG  551

seq1  CTGTCAGTTTAGGACATTTACCTTCTAAACTTACAAGCGTTCCAAGTAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGTTTAGGACATTTACCTTCTAAACTTACAAGCGTTCCAAGTAAC  601

seq1  CAGGGCAGCCTTGACAAATTTGAATGAGAAAAAGTCAGTTATTTTGAAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGCCTTGACAAATTTGAATGAGAAAAAGTCAGTTATTTTGAAAG  651

seq1  AGGGCTCACCAGGCCTGTTCCACCTCTTCCTGCTTTTGAAAATGAAGAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCACCAGGCCTGTTCCACCTCTTCCTGCTTTTGAAAATGAAGAAG  701

seq1  GCATTAGACCCTTCCTTCTGTGGAAACCCAACTCCCTTCGCCACCAGAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGACCCTTCCTTCTGTGGAAACCCAACTCCCTTCGCCACCAGAAT  751

seq1  GCTTGTTTCCCTGAAGATGAAAAGCTGCAAGATGCTTAGTCTGTTTTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTCCCTGAAGATGAAAAGCTGCAAGATGCTTAGTCTGTTTTCTG  801

seq1  ATCACTATTCCCCAAACCAAGTTAACCAGGCAATTTGTATTCTGTGTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATTCCCCAAACCAAGTTAACCAGGCAATTTGTATTCTGTGTCTG  851

seq1  TGAGAAAGTGGAGAAGGCTGAAAAATGGGCCTTTCCCAGGCTGGTCTTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGTGGAGAAGGCTGAAAAATGGGCCTTTCCCAGGCTGGTCTTGA  901

seq1  TGCCATCTGCCTTCATACCTGCTGTTCAGACCACTGATTCACTTTGCATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTGCCTTCATACCTGCTGTTCAGACCACTGATTCACTTTGCATT  951

seq1  GACTGTGCGATTTCATCCACAGATTCCAAAAATCTTCACCTAGTCACAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCGATTTCATCCACAGATTCCAAAAATCTTCACCTAGTCACAGG  1001

seq1  AAGAGAATTC  1058
      ||||||||||
seq2  AAGAGAATTC  1011