BAC Information

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BAC

Clone NameB6Ng01-036J17
Chromosome2 (Build37)
Map Location 168,983,512 - 169,123,834
singlet/doubletdoublet
Overlap genenone
Upstream geneAdnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036J17.bB6Ng01-036J17.g
ACCDH864728DH864729
length1,087650
definitionDH864728|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J17, 5' end.DH864729|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,983,512 - 168,984,616)(169,123,186 - 169,123,834)
sequence
gaattcttggtccctaactgaaggaggcaactttgaacttgggaggcttt
gccatgtaaagatgcttgctggcaagactcgagttggatccctgagacca
ccatggtagaaggaggcgcccattcttgcaagttgtactctgacctccgc
atgtgccccatcctccccccataaatcattttaatgttttggagacagag
aaggggactgtttgcctgcctgcttagtggagtccgggtagccctgtctc
caggttctctgctagctcgactgtgtggttgatggtgaggccatccaact
cccgaggttccaagacttctgaatgcagaaagcagagccccggaagggca
agtaggggagaatttaattcaggaagcgcgtggctgcttggcagcagcat
taacaaggcttcagctcccagagcatccctggctgggattgggcgggatt
cagaaacctagctcacatctctcggcgctgtccgcggggaaatcatgctt
gtgcctgttggaatggccctggatgggcagaaatcattgctggctctctc
atggcgttgctatgtgggactgcaccatcccagacaaggaacggaaggaa
ggagggggctaagcaaacagaggggaaagacaagcaaaaaacgcagcaaa
gtgaaaaaaatatccataaactagttgtgtgtgtgcgcgcgcgtgacttt
tttttttctcctccttttcttttttgtctctccggttgctctgatggcac
aaaggaaatagacagaataaaatcacatctcaggaacaccaacataaatt
cccccttgctttgacaagtaccgtaattttcctcagagatgttcttcacg
tctgggagagttacgaggcatttcattcccatctgacaaatttacaagaa
acataagagaagggattaggaagccggcaaacttcttaaattttcctcgg
gttggttttcccttcatctctttggcttcctgaggaccgatatgctgagt
gactcccctggttgggaccccaaaccataacctgaaagaaaaagacagaa
tgtgctttcagccagtatttgtatttcatttaagggg
gaattcactgaaaggaaaagataatgaggtcaaagccagaggtggggacg
ggaggaaacagcgaggcttcatttggaaccagtggagggaactcaaagaa
taggatcccaatgaaaggctcaacgcaagcgcagggactaggcgcggggg
ttgcggaggagacaaaaggacgcaggcattaataaagcagaagagaaaat
gaaaacacgacacaaagccccgtggttccacatacaagccagggtacata
caaacgccaataaaagcagagaaaggaggaacaaagggcgtcatagcaac
cccggagagtgccgttgtgctacaagctgcagcgcacatggtcatccatc
aaaggctctccacacccaaacacacgtccatgccggccgggatggctatg
cctccctagccagaggaatccaggccctggcaacacacacttatctccct
ctctttacccttccctccctctcttcaaactcaagccagttttgcacaaa
gcttccctgtttcctgacagctgcccctgaaaggcagagaaatccaacct
ggacccagagtcgcatatcccagattatacttccccaaattattccagat
caggacaaagtatagcttttcccttatgccctgagagagagagagagaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_168983512_168984616
seq2: B6Ng01-036J17.b_44_1130

seq1  GAATTCTTGGTCCCTAACTGAAGGAGGCAACTTTGAACTTGGGAGGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTCCCTAACTGAAGGAGGCAACTTTGAACTTGGGAGGCTTT  50

seq1  GCCATGTAAAGATGCTTGCTGGCAAGACTCGAGTTGGATCCCTGAGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTAAAGATGCTTGCTGGCAAGACTCGAGTTGGATCCCTGAGACCA  100

seq1  CCATGGTAGAAGGAGGCGCCCATTCTTGCAAGTTGTACTCTGACCTCCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTAGAAGGAGGCGCCCATTCTTGCAAGTTGTACTCTGACCTCCGC  150

seq1  ATGTGCCCCATCCTCCCCCCATAAATCATTTTAATGTTTTGGAGACAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCCATCCTCCCCCCATAAATCATTTTAATGTTTTGGAGACAGAG  200

seq1  AAGGGGACTGTTTGCCTGCCTGCTTAGTGGAGTCCGGGTAGCCCTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACTGTTTGCCTGCCTGCTTAGTGGAGTCCGGGTAGCCCTGTCTC  250

seq1  CAGGTTCTCTGCTAGCTCGACTGTGTGGTTGATGGTGAGGCCATCCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCTCTGCTAGCTCGACTGTGTGGTTGATGGTGAGGCCATCCAACT  300

seq1  CCCGAGGTTCCAAGACTTCTGAATGCAGAAAGCAGAGCCCCGGAAGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGTTCCAAGACTTCTGAATGCAGAAAGCAGAGCCCCGGAAGGGCA  350

seq1  AGTAGGGGAGAATTTAATTCAGGAAGCGCGTGGCTGCTTGGCAGCAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGGAGAATTTAATTCAGGAAGCGCGTGGCTGCTTGGCAGCAGCAT  400

seq1  TAACAAGGCTTCAGCTCCCAGAGCATCCCTGGCTGGGATTGGGCGGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGGCTTCAGCTCCCAGAGCATCCCTGGCTGGGATTGGGCGGGATT  450

seq1  CAGAAACCTAGCTCACATCTCTCGGCGCTGTCCGCGGGGAAATCATGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCTAGCTCACATCTCTCGGCGCTGTCCGCGGGGAAATCATGCTT  500

seq1  GTGCCTGTTGGAATGGCCCTGGATGGGCAGAAATCATTGCTGGCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGTTGGAATGGCCCTGGATGGGCAGAAATCATTGCTGGCTCTCTC  550

seq1  ATGGCGTTGCTATGTGGGACTGCACCATCCCAGACAAGGAACGGAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGTTGCTATGTGGGACTGCACCATCCCAGACAAGGAACGGAAGGAA  600

seq1  GGAGGGGGCTAAGCAAACAGAGGGGAAAGACAAGCAAAAAACGCAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGCTAAGCAAACAGAGGGGAAAGACAAGCAAAAAACGCAGCAAA  650

seq1  GTGAAAAAAATATCCATAAACTAGTTGTGTGTGTGCGCGCGCGTGACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAAATATCCATAAACTAGTTGTGTGTGTGCGCGCGCGTGACTTT  700

seq1  TTTTTTTCTCCTCCTTTTCTTTTTTGTCTCTCCGGTTGCTCTGATGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCCTCCTTTTCTTTTTTGTCTCTCCGGTTGCTCTGATGGCAC  750

seq1  AAAGGAAATAGACAGAATAAAATCACATCTCAGGAACACCAACATAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATAGACAGAATAAAATCACATCTCAGGAACACCAACATAAATT  800

seq1  CCCCCTTGCTTTGACAAGTA-CGTAATTTTCTTCAGAGATGTTCTTCACG  849
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  CCCCCTTGCTTTGACAAGTACCGTAATTTTCCTCAGAGATGTTCTTCACG  850

seq1  TCT-GGAGAGTTACGAGGCAATTTCATTCCCATCTGACAAATTTACAAAG  898
      ||| ||||||||||||||| |||||||||||||||||||||||||| |||
seq2  TCTGGGAGAGTTACGAGGC-ATTTCATTCCCATCTGACAAATTTAC-AAG  898

seq1  AAACATTAGAGAGAAGGGGATTAGGAAAGCCGGCAAGCTTCATAGACTTT  948
      |||||| ||||   | ||||||||| |||||||||| |||| || | |||
seq2  AAACATAAGAG---AAGGGATTAGG-AAGCCGGCAAACTTCTTA-AATTT  943

seq1  TCCTCGGGCTGTGTTTCCCTTCCATCTCTCTGGGCTTCCGTGAGGACCGA  998
      |||||||| ||  |||||||| ||||||| | ||||||| ||||||||||
seq2  TCCTCGGGTTGGTTTTCCCTT-CATCTCT-TTGGCTTCC-TGAGGACCGA  990

seq1  TCATGCATGAGTGACTCCCGTGGTGTGGACCCCAGAACCGAGACACTTGG  1048
      | |||| |||||||||||| ||||  |||||||| |||| | |  ||  |
seq2  T-ATGC-TGAGTGACTCCCCTGGTTGGGACCCCA-AACC-ATAACCT--G  1034

seq1  AAAGAAGAAGACAAGAAATGTGCTTTCAGCCAGCTAATTGTATTTACATT  1098
      |||||| ||||||   ||||||||||||||||| || |||||||| ||||
seq2  AAAGAAAAAGACA--GAATGTGCTTTCAGCCAG-TATTTGTATTT-CATT  1080

seq1  TTAGGGG  1105
      | |||||
seq2  TAAGGGG  1087

seq1: chr2_169123186_169123834
seq2: B6Ng01-036J17.g_68_717 (reverse)

seq1  TCTCTCTCTCTCTCTCTCAGGGCATAAGGG-AAAGCTATACTTTGTCCTG  49
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCAGGGCATAAGGGAAAAGCTATACTTTGTCCTG  50

seq1  ATCTGGAATAATTTGGGGAAGTATAATCTGGGATATGCGACTCTGGGTCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAATAATTTGGGGAAGTATAATCTGGGATATGCGACTCTGGGTCC  100

seq1  AGGTTGGATTTCTCTGCCTTTCAGGGGCAGCTGTCAGGAAACAGGGAAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGATTTCTCTGCCTTTCAGGGGCAGCTGTCAGGAAACAGGGAAGC  150

seq1  TTTGTGCAAAACTGGCTTGAGTTTGAAGAGAGGGAGGGAAGGGTAAAGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCAAAACTGGCTTGAGTTTGAAGAGAGGGAGGGAAGGGTAAAGAG  200

seq1  AGGGAGATAAGTGTGTGTTGCCAGGGCCTGGATTCCTCTGGCTAGGGAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATAAGTGTGTGTTGCCAGGGCCTGGATTCCTCTGGCTAGGGAGG  250

seq1  CATAGCCATCCCGGCCGGCATGGACGTGTGTTTGGGTGTGGAGAGCCTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCATCCCGGCCGGCATGGACGTGTGTTTGGGTGTGGAGAGCCTTT  300

seq1  GATGGATGACCATGTGCGCTGCAGCTTGTAGCACAACGGCACTCTCCGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGACCATGTGCGCTGCAGCTTGTAGCACAACGGCACTCTCCGGG  350

seq1  GTTGCTATGACGCCCTTTGTTCCTCCTTTCTCTGCTTTTATTGGCGTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTATGACGCCCTTTGTTCCTCCTTTCTCTGCTTTTATTGGCGTTTG  400

seq1  TATGTACCCTGGCTTGTATGTGGAACCACGGGGCTTTGTGTCGTGTTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACCCTGGCTTGTATGTGGAACCACGGGGCTTTGTGTCGTGTTTTC  450

seq1  ATTTTCTCTTCTGCTTTATTAATGCCTGCGTCCTTTTGTCTCCTCCGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTTCTGCTTTATTAATGCCTGCGTCCTTTTGTCTCCTCCGCAA  500

seq1  CCCCCGCGCCTAGTCCCTGCGCTTGCGTTGAGCCTTTCATTGGGATCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGCGCCTAGTCCCTGCGCTTGCGTTGAGCCTTTCATTGGGATCCTA  550

seq1  TTCTTTGAGTTCCCTCCACTGGTTCCAAATGAAGCCTCGCTGTTTCCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAGTTCCCTCCACTGGTTCCAAATGAAGCCTCGCTGTTTCCTCC  600

seq1  CGTCCCCACCTCTGGCTTTGACCTCATTATCTTTTCCTTTCAGTGAATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCCACCTCTGGCTTTGACCTCATTATCTTTTCCTTTCAGTGAATTC  650