BAC Information

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BAC

Clone NameB6Ng01-038C06
Chromosome2 (Build37)2 (Build37)
Map Location 142,776,676 - 142,777,69855,105,503 - 55,106,086
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038C06.bB6Ng01-038C06.g
ACCDH865798DH865799
length1,004670
definitionDH865798|Mus musculus domesticus DNA, BAC clone: B6Ng01-038C06, 5' end.DH865799|Mus musculus domesticus DNA, BAC clone: B6Ng01-038C06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,676 - 142,777,698)(55,105,503 - 55,106,086)
sequence
gaattgtttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgtggtctcttt
gtcttattgacggtgtcttttgccttgcagaaactttggagtttcattag
gtcccatttgtcaattctcgatcttacagcacaagccattgctgttctgt
tcaggaatttttcccctgtgcccatatcttcaaggcttttccccactttc
tcctctataagtttcagtgtctctggttttatgtgaagttctttgatcca
tttagatttgaccttagtacaaggagataagtatggatcgattcgcattc
ttctgcacgataacaaccagttgtgccagcagcaattgttgaaaatgctg
tctttcttccactggatggttttagctcccttgtcgaagatcaagtgacc
ataggtgtgtgggttcatttctgggtcttcaattctattccattggtcta
cttgtctgtctctataccagtaccatgcagtttttaccacaattgctctg
tagtaaagctttaggtcaggcatggtgattccaccagaggttcttttatc
catgagaagagtttttgctatcctaggttttttgttattccagatgaatt
tgcaaattgctccttctaattcgttgaagaattgagttggaattttgatg
gggattgcattgaatctgtagattgcttttggcaagatagccatttttac
aatgttgatcctgccaatccatgagcatgggagatctttccatcttctga
gatcttctttaatttctttcttcagagacgtgaagttttctcatacagat
ctttcacttccttagttagagtcacgccaagatattttatattatttgtg
actattgagaaggtgtgtttccctaatttcttctcagcctgtttattctt
gtgt
gaattcatttctgagcccatgaagttcagtgcaggtcagcaaaggcaata
gaagccatagaataagaaggagccagaagattagaacaacctttcagagt
tagtttgaggccaagcagagcaattctgtaagaagctgaaagaagccaga
ttgaattagttagcttaaggaggagtttgagttaaaacagctgagttgaa
ccagccagccaaatccagaaagaaccagaaaagatgagccttatcagtac
taagcttccaagatgacaattactgcaggcaaataaaagttatttttaca
aaaagctagtaatccctcatttggacaccatgaagtggtgagtgtaatat
tgcaatgatatctaaaaggacaggcaggcctctgtgactcagcttgactc
actgattttgagacagcctactcaactgtgccagcatcctcctgctcata
tctcaacacctgacctgccatttcctgctcctggcttacttaagtgtatt
acttaccctgtaagttctgcttctttcctctcaaatctgaccagcagcta
ggtccatgttcagtttcaacataactctgtcccagcaatggtgtgactag
ttacctgttctatgctgactcatatattttatatatatatatatgtgtgt
gtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776676_142777698
seq2: B6Ng01-038C06.b_47_605 (reverse)

seq1  ACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCA  50

seq1  CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAG  100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTG  100

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAGAAAGACAGCATTTTCAACAATTGCTGCTGGCACAACTGGTTGTTAT  150

seq1  CATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  200
      | || ||||||||| |||||||||||||||||||||||||||||||||||
seq2  CGTGCAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  200

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  250
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AAATCTAAATGGATCAAAGAACTTCACATAAAACCAGAGACACTGAAACT  250

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACA  300
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  300

seq1  AATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  350

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGT  400

seq1  CAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATC  450
      |||||||||||| |||||    ||||||||||||||||||||||||||||
seq2  CAATAAGACAAAGAGACC----ACAGATTGGGAAAGGATCTTTACCTATC  446

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  496

seq1  GTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAA--  548
      ||||||||||||||||||||||||||||||||||||||||||||| ||  
seq2  GTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  546

seq1  -AACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCAC  597
       ||| | | | |                                      
seq2  GAACAAACAATTC-------------------------------------  559

seq1  AACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCC  647
                                                        
seq2  --------------------------------------------------  559

seq1  TTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAG  697
                                                        
seq2  --------------------------------------------------  559

seq1  AGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATG  747
                                                        
seq2  --------------------------------------------------  559

seq1  GGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAG  797
                                                        
seq2  --------------------------------------------------  559

seq1  ATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGG  847
                                                        
seq2  --------------------------------------------------  559

seq1  CAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGG  897
                                                        
seq2  --------------------------------------------------  559

seq1  ATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAA  947
                                                        
seq2  --------------------------------------------------  559

seq1  AGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAAT  997
                                                        
seq2  --------------------------------------------------  559

seq1  GGGGCTCAGAACTGAACAAAGAATTC  1023
                                
seq2  --------------------------  559

seq1: chr2_55105503_55106086
seq2: B6Ng01-038C06.g_153_736 (reverse)

seq1  ACACACACACACACACACACACACACATATATATATATATAAAATATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACATATATATATATATAAAATATATG  50

seq1  AGTCAGCATAGAACAGGTAACTAGTCACACCATTGCTGGGACAGAGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCATAGAACAGGTAACTAGTCACACCATTGCTGGGACAGAGTTAT  100

seq1  GTTGAAACTGAACATGGACCTAGCTGCTGGTCAGATTTGAGAGGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAACTGAACATGGACCTAGCTGCTGGTCAGATTTGAGAGGAAAGAA  150

seq1  GCAGAACTTACAGGGTAAGTAATACACTTAAGTAAGCCAGGAGCAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTTACAGGGTAAGTAATACACTTAAGTAAGCCAGGAGCAGGAAA  200

seq1  TGGCAGGTCAGGTGTTGAGATATGAGCAGGAGGATGCTGGCACAGTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTCAGGTGTTGAGATATGAGCAGGAGGATGCTGGCACAGTTGAG  250

seq1  TAGGCTGTCTCAAAATCAGTGAGTCAAGCTGAGTCACAGAGGCCTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGTCTCAAAATCAGTGAGTCAAGCTGAGTCACAGAGGCCTGCCTG  300

seq1  TCCTTTTAGATATCATTGCAATATTACACTCACCACTTCATGGTGTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTAGATATCATTGCAATATTACACTCACCACTTCATGGTGTCCAA  350

seq1  ATGAGGGATTACTAGCTTTTTGTAAAAATAACTTTTATTTGCCTGCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGATTACTAGCTTTTTGTAAAAATAACTTTTATTTGCCTGCAGTA  400

seq1  ATTGTCATCTTGGAAGCTTAGTACTGATAAGGCTCATCTTTTCTGGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCATCTTGGAAGCTTAGTACTGATAAGGCTCATCTTTTCTGGTTCT  450

seq1  TTCTGGATTTGGCTGGCTGGTTCAACTCAGCTGTTTTAACTCAAACTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATTTGGCTGGCTGGTTCAACTCAGCTGTTTTAACTCAAACTCCT  500

seq1  CCTTAAGCTAACTAATTCAATCTGGCTTCTTTCAGCTTCTTACAGAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGCTAACTAATTCAATCTGGCTTCTTTCAGCTTCTTACAGAATTG  550

seq1  CTCTGCTTGGCCTCAAACTAACTCTGAAAGGTTG  584
      ||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTGGCCTCAAACTAACTCTGAAAGGTTG  584