BAC Information

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BAC

Clone NameB6Ng01-038G15
Chromosome2 (Build37)1 (Build37)
Map Location 21,838,548 - 21,839,477174,664,311 - 174,664,862
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
Downstream geneLOC637235, Myo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038G15.bB6Ng01-038G15.g
ACCDH865979DH865980
length926941
definitionDH865979|Mus musculus domesticus DNA, BAC clone: B6Ng01-038G15, 5' end.DH865980|Mus musculus domesticus DNA, BAC clone: B6Ng01-038G15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,838,548 - 21,839,477)(174,664,311 - 174,664,862)
sequence
gaattcttgcagcatccaatactcacacaaaaaaaaatctcatcttgaac
ttcctcatcctccctggatctgtggatttcttggactgttctcaccgtag
tactgaactagaccatgttctaggataacatggctctgtcatggatctca
gcaagcacccagatagttcttggagcaaagattgtgggtgaacaaggcta
aatctaaatcatcatgctgcagcgttaaaagctgtccttcccctctaccc
cctcattcttactcccccaattcccacccccctctacccccctcagctag
caaggaatacctgttttattaggcgaaggaaattcatgtgaaataaacca
ttcaaagctatcggagtttggtgtcgtgtacaatacatgacctgaggttt
gtatgcacataaaaactgttcggtagtgggctatttttcttttgaaattt
gccactttgtatggtgaccttttccttaggtgacagttggaggaactttt
agttctaaatgtagtgattaggttgtgaagttggcatatcaaaattataa
tattggatttctatttttaagtgactgtaaaaagactctattccaacaag
aggcgaaacaaattggcattctttataaaataaatgtgggttgtaatgac
cttccttgacagaacaaaatgtggatgaaggagatgggggagaggctgtt
agaacgtgaggacgcaagagtaatgttcagtcaatttgggagattctgaa
agacaaggaggcatctgcatcttccccccccccccacccgcccaccgacc
cgacgcatggattttaggatctcttatctccaggaggtctgaagacatca
ccaaaacactgagggcctagagtggaacagaacacatcaaataaccttgt
atttagtagctatgagttggagcaaa
gaattcacccctgagtttgattatttcctgccgtctactcctcttgggtg
aatttgcttcctttttttctagggcttttagatgtgttgtcaagctgcta
gtatgtgctgtctcccgtttcttcttggaggcactcagagctatgagttt
ccctcttagaaatgcattcattgtgtcccatcggtttgggtacgttgtgg
cttcattttcattaaactctaaaaagtctttaatttctttctttattcct
tccttgaccaaggtatcattgagaagagtgttattcagtttccacgtgaa
tgttggctttccattatttatgttgttattgaagatcagtcttaggccat
ggtggtctgataggatacatgggacaatttcaatatttttgtatctattg
aggcctgttttgtgaccaattatatggtcaattttggagaaggtcccgtg
aggtgctgagaagaaggtatatccttttgttttaggataaaatgttctgt
agatatctgtcaggtccatttgtttcataacttctgttagtttcactgtg
tccctgtttagtttctgtttccacgatctgtcctttgaagaaagtggtgt
gttgaagtctcccactattattgtgtgaggtgcaatgtatgctttgagct
ttactaaagtgtctctaatgaatgtggctgcccttgcatttggagcgtag
atattcagaattgagagttcctcttggaggattttacctttgatgagtat
gaagtgtccctccttgtcttttttgataactttgggttggaagtcgattt
tatccgatattaaaatggctactccagcttgtttcttcagtccatttgct
tggaaaattgttttccagcctttcactctgaggtagtgtctgtctttttc
cctgagatgggtttcctgtaagcagcagatgttgggtcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_21838548_21839477
seq2: B6Ng01-038G15.b_45_970

seq1  GAATTCTTGCAGCATCCAATACTCACACAAAAAAAAATCTCATCTTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCAGCATCCAATACTCACACAAAAAAAAATCTCATCTTGAAC  50

seq1  TTCCTCATCCTCCCTGGATCTGTGGATTTCTTGGACTGTTCTCACCGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATCCTCCCTGGATCTGTGGATTTCTTGGACTGTTCTCACCGTAG  100

seq1  TACTGAACTAGACCATGTTCTAGGATAACATGGCTCTGTCATGGATCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACTAGACCATGTTCTAGGATAACATGGCTCTGTCATGGATCTCA  150

seq1  GCAAGCACCCAGATAGTTCTTGGAGCAAAGATTGTGGGTGAACAAGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACCCAGATAGTTCTTGGAGCAAAGATTGTGGGTGAACAAGGCTA  200

seq1  AATCTAAATCATCATGCTGCAGCGTTAAAAGCTGTCCTTCCCCTCTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAATCATCATGCTGCAGCGTTAAAAGCTGTCCTTCCCCTCTACCC  250

seq1  CCTCATTCTTACTCCCCCAATTCCCACCCCCCTCTACCCCCCTCAGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCTTACTCCCCCAATTCCCACCCCCCTCTACCCCCCTCAGCTAG  300

seq1  CAAGGAATACCTGTTTTATTAGGCGAAGGAAATTCATGTGAAATAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATACCTGTTTTATTAGGCGAAGGAAATTCATGTGAAATAAACCA  350

seq1  TTCAAAGCTATCGGAGTTTGGTGTCGTGTACAATACATGACCTGAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCTATCGGAGTTTGGTGTCGTGTACAATACATGACCTGAGGTTT  400

seq1  GTATGCACATAAAAACTGTTCGGTAGTGGGCTATTTTTCTTTTGAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCACATAAAAACTGTTCGGTAGTGGGCTATTTTTCTTTTGAAATTT  450

seq1  GCCACTTTGTATGGTGACCTTTTCCTTAGGTGACAGTTGGAGGAACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTTGTATGGTGACCTTTTCCTTAGGTGACAGTTGGAGGAACTTTT  500

seq1  AGTTCTAAATGTAGTGATTAGGTTGTGAAGTTGGCATATCAAAATTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAAATGTAGTGATTAGGTTGTGAAGTTGGCATATCAAAATTATAA  550

seq1  TATTGGATTTCTATTTTTAAGTGACTGTAAAAAGACTCTATTCCAACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATTTCTATTTTTAAGTGACTGTAAAAAGACTCTATTCCAACAAG  600

seq1  AGGCGAAACAAATTGGCATTCTTTATAAAATAAATGTGGGTTGTAATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAAACAAATTGGCATTCTTTATAAAATAAATGTGGGTTGTAATGAC  650

seq1  CTTCCTTGACAGAACAAAATGTGGATGAAGGAGATGGGGGAGAGGCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGACAGAACAAAATGTGGATGAAGGAGATGGGGGAGAGGCTGTT  700

seq1  AGAACGTGAGGACGCAAGAGTAATGTTCAGTCAATTTGGGAGATTCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTGAGGACGCAAGAGTAATGTTCAGTCAATTTGGGAGATTCTGAA  750

seq1  AGACAAGGAGGCATCTGCATCTTCCCCCCCCCCCCACCCGCCCACCGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGAGGCATCTGCATCTTCCCCCCCCCCCCACCCGCCCACCGACC  800

seq1  CGACGCATGGATTTTAGGATCTCTCTATCTCCAGGAGGTCTGAAGACATC  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CGACGCATGGATTTTAGGATCTCT-TATCTCCAGGAGGTCTGAAGACATC  849

seq1  ACCAAAACACTGAGGGCCTAGGAGTGGAAACAGAACACAACAAATAACCT  900
      |||||||||||||||||||| |||||| ||||||||||| ||||||||||
seq2  ACCAAAACACTGAGGGCCTA-GAGTGG-AACAGAACACATCAAATAACCT  897

seq1  TGTATTTAGTAGCTAATGAGTTGGAGCAAA  930
      |||||||||||||| |||||||||||||||
seq2  TGTATTTAGTAGCT-ATGAGTTGGAGCAAA  926

seq1: chr1_174664311_174664862
seq2: B6Ng01-038G15.g_68_619 (reverse)

seq1  AGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGA  50

seq1  TATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAG  100

seq1  CACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACA  150

seq1  GGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGA  200

seq1  CCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGC  250

seq1  CAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTC  300

seq1  AAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAA  350

seq1  TGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAA  400
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  TGAAGCCACAACGTACCCAAACCGATGGGACACAATGAATGCATTTCTAA  400

seq1  GAGGGAAACTCATAGCGCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCA  450
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCA  450

seq1  CATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGC  500

seq1  AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTG  550

seq1  AA  552
      ||
seq2  AA  552