BAC Information

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BAC

Clone NameB6Ng01-038P04
Chromosome2 (Build37)
Map Location 55,963,387 - 55,964,565
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt13, LOC666936, Kcnj3
Downstream geneLOC227920, Nr4a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038P04.bB6Ng01-038P04.g
ACCDH866360DH866361
length1,143910
definitionDH866360|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P04, 5' end.DH866361|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaataaataatattttctgaataatcaactttttaattggtgatt
ttacttgtcagttgttaagttagaatttcattaattggaatcacagagat
tcaattcataggctcctcagggttacttatagtatggatattttttagat
ttttatatgttgtttttacattttgatgtcaacaaattctctgcaaattg
taatgtgcaaattaatttttagcaatttaataacaagttttcaattaatt
taaatttatagtatcttccttttatttatttgaataaaacaaaggaaaaa
ttatttggatcatttcagaatggaaacaaaagttgtcttcaaagatacta
cggtgtgaaaatgttgctaggtgaagcttcataataaaacatctcaatac
aatatttaacatcagattttacatttattagcaaactttcctttttgcca
ctatgaaaataaatcacgcatatacatgcacagacaccttacaatacagc
attttataaagttaaaaaaaaatacagctactcatttctacatctaaacg
ttttgtattaactttttatatcatttctgttttttgttttttggaatttt
atcaaattttaaattgtatgttttaactctacttctgtataattttatat
acattttattgcattagaggtgaaaaattaatcaaattcattttactacc
taggttttttcctccctatttgttacttttcctgcgaatactatttggag
cattatttgcagatgtgaacgccgtgcacttccatgggatctctgtgttg
ctagccagaaaatgtggtcctctctatttgtcaacacctgtttgttgact
cccaacctttgggagcttccagagatataattacttaggtttcacattta
caacatttgttattctccttaaaatttgagcagtctttaaaacctgtggt
tttcatttgagtatacatcaaagatgataaaacacatttatacacattta
tcataatttgtaccatggcaaatagtgttcattgaaacaaaacaaaataa
aaataacacaacaacaacaacaaaccagagcatggtgcttgttttaacgt
ctgttatcagtacaatcaatgaatcctaagctgcagtaataaa

gaattcactcttgcacctgcgtacaaggcttgtttactagttaggcacag
cggaggcccgcgccatcttataatggcgattgctctcggcacacacggct
ctcctcagagattactggcggcacacatgcgattgctcgcagcacgtacc
ggctttccacaatatatatatatatatatatatatatatatatatatata
tatatatatatatatatactcaaaatttctactagagaactcctacacct
taaaaactacttcagcaatgtggctgaatataaaattaattcacactaat
caatagccttcctctatacaaaggataaattgtctgaaaaagaaattagg
gaaccaacatgcctcacaatagttacaaataatataaaatatcttggcat
gattctagccaagcaagtgaaagttctgtatgtcaagaatgtcaagtctc
tgaagaaagatattaagaagacctcagaagatggaaagacgtctcatatt
tgtggatcactgaaattaaaatagtaaaaaaattctgtcttaccagaagc
aatctaaagattcaatgcaatccccttcaaaattccaactgaattcttca
cagagatagaaagagcaacactcaacttcttatggaataataaaaaaccc
aggataatgacaacaactcccaacaatagaagaacttctaggagaatcac
catcctgacctcaagctgtagtgataaaaaatttcatattttttggtata
gagatagagaggtgaatcaattgatagagttgaagacccagaaagaaatc
cacacacccatgggtcacttttatttttaacaaagaggcaaagccatggc
aggcacaaaacaagacagcattttaaacaaatggtgtgggtctaaccttg
cagtcctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55963387_55964565
seq2: B6Ng01-038P04.b_49_1191 (reverse)

seq1  TTTATTTACTGCAGCTTATGAATCATTTGAATTTGTTACTTGAATAACAG  50
      |||| ||||||||||||| || ||| ||||  ||| ||||   |||||||
seq2  TTTA-TTACTGCAGCTTAGGATTCA-TTGA--TTG-TACT--GATAACAG  43

seq1  ACGTTTAAAGACAAGCACCATGCTTCCTGGTTTTGTTTGTTTGTTTGTTT  100
      |||||  || ||||||||||||||  |||         |||||||  | |
seq2  ACGTT--AAAACAAGCACCATGCT--CTG---------GTTTGTTGTTGT  80

seq1  TGTTGT-TTATTTTTTTATTTTTTGTTTTTGTTTTCAAATTGAACACTAT  149
      |||||| |||||||    | |||||||||   ||||||  ||||||||||
seq2  TGTTGTGTTATTTT----TATTTTGTTTT--GTTTCAA--TGAACACTAT  122

seq1  TTGCCATGGTTACAAATTATGATTAAATGTTGTATAAATGTGTTTTATTC  199
      ||||||||| |||||||||||| |||||| ||||||||||||||||| ||
seq2  TTGCCATGG-TACAAATTATGA-TAAATG-TGTATAAATGTGTTTTA-TC  168

seq1  ATCTTTTGATTGTTATACTCAAATGAAAACCACAGGTTTTTAAAGGACTG  249
      ||| ||||||   |||||||||||||||||||||||||||  || |||||
seq2  ATC-TTTGAT--GTATACTCAAATGAAAACCACAGGTTTT--AAAGACTG  213

seq1  CTCAAATTTTAAGGAGAATAACAAATGTTGTAAATGTGAAACCTAAGTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTTTAAGGAGAATAACAAATGTTGTAAATGTGAAACCTAAGTAA  263

seq1  TTATATCTCTGGAAGCTCCCAAAGGTTGGGAGTCAACAAACAGGTGTTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTCTGGAAGCTCCCAAAGGTTGGGAGTCAACAAACAGGTGTTGA  313

seq1  CAAATAGAGAGGACCACATTTTCTGGCTAGCAACACAGAGATCCCATGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAGAGGACCACATTTTCTGGCTAGCAACACAGAGATCCCATGGA  363

seq1  AGTGCACGGCGTTCACATCTGCAAATAATGCTCCAAATAGTATTCGCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACGGCGTTCACATCTGCAAATAATGCTCCAAATAGTATTCGCAGG  413

seq1  AAAAGTAACAAATAGGGAGGAAAAAACCTAGGTAGTAAAATGAATTTGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAACAAATAGGGAGGAAAAAACCTAGGTAGTAAAATGAATTTGAT  463

seq1  TAATTTTTCACCTCTAATGCAATAAAATGTATATAAAATTATACAGAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCACCTCTAATGCAATAAAATGTATATAAAATTATACAGAAGT  513

seq1  AGAGTTAAAACATACAATTTAAAATTTGATAAAATTCCAAAAAACAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAAAACATACAATTTAAAATTTGATAAAATTCCAAAAAACAAAAA  563

seq1  ACAGAAATGATATAAAAAGTTAATACAAAACGTTTAGATGTAGAAATGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGATATAAAAAGTTAATACAAAACGTTTAGATGTAGAAATGAG  613

seq1  TAGCTGTATTTTTTTTTAACTTTATAAAATGCTGTATTGTAAGGTGTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTATTTTTTTTTAACTTTATAAAATGCTGTATTGTAAGGTGTCTG  663

seq1  TGCATGTATATGCGTGATTTATTTTCATAGTGGCAAAAAGGAAAGTTTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATATGCGTGATTTATTTTCATAGTGGCAAAAAGGAAAGTTTGC  713

seq1  TAATAAATGTAAAATCTGATGTTAAATATTGTATTGAGATGTTTTATTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGTAAAATCTGATGTTAAATATTGTATTGAGATGTTTTATTAT  763

seq1  GAAGCTTCACCTAGCAACATTTTCACACCGTAGTATCTTTGAAGACAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTCACCTAGCAACATTTTCACACCGTAGTATCTTTGAAGACAACT  813

seq1  TTTGTTTCCATTCTGAAATGATCCAAATAATTTTTCCTTTGTTTTATTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCATTCTGAAATGATCCAAATAATTTTTCCTTTGTTTTATTCA  863

seq1  AATAAATAAAAGGAAGATACTATAAATTTAAATTAATTGAAAACTTGTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAAAGGAAGATACTATAAATTTAAATTAATTGAAAACTTGTTA  913

seq1  TTAAATTGCTAAAAATTAATTTGCACATTACAATTTGCAGAGAATTTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGCTAAAAATTAATTTGCACATTACAATTTGCAGAGAATTTGTT  963

seq1  GACATCAAAATGTAAAAACAACATATAAAAATCTAAAAAATATCCATACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAAAATGTAAAAACAACATATAAAAATCTAAAAAATATCCATACT  1013

seq1  ATAAGTAACCCTGAGGAGCCTATGAATTGAATCTCTGTGATTCCAATTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAACCCTGAGGAGCCTATGAATTGAATCTCTGTGATTCCAATTAA  1063

seq1  TGAAATTCTAACTTAACAACTGACAAGTAAAATCACCAATTAAAAAGTTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCTAACTTAACAACTGACAAGTAAAATCACCAATTAAAAAGTTG  1113

seq1  ATTATTCAGAAAATATTATTTATTGAATTC  1179
      ||||||||||||||||||||||||||||||
seq2  ATTATTCAGAAAATATTATTTATTGAATTC  1143


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