BAC Information

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BAC

Clone NameB6Ng01-038P08
Chromosome2 (Build37)
Map Location 179,634,981 - 179,806,888
singlet/doubletdoublet
Overlap geneTaf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5
Upstream geneLOC665264, LOC100043168, LOC100039413, Cdh4
Downstream geneHrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038P08.bB6Ng01-038P08.g
ACCDH866368DH866369
length1,2391,027
definitionDH866368|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P08, 5' end.DH866369|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,634,981 - 179,636,240)(179,805,859 - 179,806,888)
sequence
gaattccactcaagcctgaacgccctgagcatctgttgccctcacttaga
gctcagcttgcaccaggagtcctccttccattacctaattcctcacagcc
tgctcctgggcccccattttctcctcagcccatacctgcacttttctccc
ctcacaacttccttcttgtcactgccttgtcccaggcagagatgtgaaag
catctatgttcccaggaaggatttcctgggcagctcagggagaattctga
ccaccattagaatttgaggcttccccttactgggaccagcacatcacatc
aatcacatccctactattaggacttagatggctgacatgccctagagcag
ggatatggtctagtaccagtctgtcagcttcctgccagctggggctatca
ctcttggtcggcagagagcaacttcaggagccacgtccaggccttgttct
ctgtggctttcagggctttccagcatgatgttgatatatgatgatgccct
acccatcctcacagactccagtcccatccaaggactctagaaactgacac
agatgcacacacacagatacacacacacagagacacagacacacacacac
acacagacacacacacacacagagacacacacaccaggaggaagggagca
aagacagagacaaatccacccacatcaggctctttggtgagccccacaga
atcagccatgggaagctggaggctgagggagaagcacatggcctccccgt
gacccttggtggccaggcaaggatagggccaacagaggtttctgacagct
tccagctctaaatgacacccacagaattcactagagccaccagtccaggg
tctgtttccacacagtatagagaccttagcaaacatacctcacacaccct
ttaccagaaagacaaagtgtcacgccagggacacagcaagcaccaacata
gaagcacacagtgattcagccagacaccaacctgccgggcctgctcttaa
actggcacagacagagctgtaagatttagtctagtcattttttgtcatag
caacacagagacaccaccagcacaggaggccagaataccatctacattca
gcctcatctcttggagacaaataccaataagtatcctccctgaagagcaa
gtgtccaaggctttgcagagaggggccttgacacttcttgacttgcctac
ataaccttagtccacgttcttgaacatatgctgcactca
gaattccacggtgctaccgtgtgagagggccactgctgctatacaggatg
ctaagctcccggctactgtccacaagaggtgtgtccaggaaccttccgca
ctagtttcacagtgaaccgattgatctgattgtgtagctggcactagaga
catgtgccaagatgtcttcaatgagaaagaagaaagcactgtggaagagg
ggtgtagctcagttggtagaatgcctaccgacctagcatgcacaaagccc
tggggttgacccctggaatcacataatccaggcatgccaccacttactca
ggaggtggaggtaggaaggtcagaagttcaaggtcatcttctactactta
gcaagttcaaggccagccagggagccagacacatgcaaacctgtcttaaa
aaaagagaaagggggaaaaaaaaaagcattcttgaggaatgttttcattt
cttcagtgttattcttttataggctaagcacaattggttaacagtattca
cagttaactaacttaattctaagcattccattttcactttgctaccggat
attaaatcccacgcgggcattactgtttctgctacatacttttacacttc
attacatatgtttgtgatctacttcgttcttcatgtggaaaacatttaga
aactggagtatcattttgtcacctgacaactcacattacatggtttttac
ttaattatatgccattcacgggggtgggggtaagtgttcctgctgtgtgc
ggtggcagatgcactccggaagccagacaggcatctgggtgccaggccag
caagggagagcctgtcttcaaaaacaaaataaagcacgcgttcacaacgc
tgctgtctgggtgcctgccctatggggccttgtgggaagactgactggag
ggacatctgccacttcccacctaatccccgactcagcactcaaggtccag
actggttcacttgcatgcagggaaacttcccgacagttcgaaactgtcca
tgcttgtttctttagatttctgagttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_179634981_179636240
seq2: B6Ng01-038P08.b_45_1283

seq1  GAATTCCACTCAAGCCTGAACGCCCTGAGCATCTGTTGCCCTCACTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCAAGCCTGAACGCCCTGAGCATCTGTTGCCCTCACTTAGA  50

seq1  GCTCAGCTTGCACCAGGAGTCCTCCTTCCATTACCTAATTCCTCACAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTTGCACCAGGAGTCCTCCTTCCATTACCTAATTCCTCACAGCC  100

seq1  TGCTCCTGGGCCCCCATTTTCTCCTCAGCCCATACCTGCACTTTTCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGGGCCCCCATTTTCTCCTCAGCCCATACCTGCACTTTTCTCCC  150

seq1  CTCACAACTTCCTTCTTGTCACTGCCTTGTCCCAGGCAGAGATGTGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACTTCCTTCTTGTCACTGCCTTGTCCCAGGCAGAGATGTGAAAG  200

seq1  CATCTATGTTCCCAGGAAGGATTTCCTGGGCAGCTCAGGGAGAATTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATGTTCCCAGGAAGGATTTCCTGGGCAGCTCAGGGAGAATTCTGA  250

seq1  CCACCATTAGAATTTGAGGCTTCCCCTTACTGGGACCAGCACATCACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATTAGAATTTGAGGCTTCCCCTTACTGGGACCAGCACATCACATC  300

seq1  AATCACATCCCTACTATTAGGACTTAGATGGCTGACATGCCCTAGAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATCCCTACTATTAGGACTTAGATGGCTGACATGCCCTAGAGCAG  350

seq1  GGATATGGTCTAGTACCAGTCTGTCAGCTTCCTGCCAGCTGGGGCTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGGTCTAGTACCAGTCTGTCAGCTTCCTGCCAGCTGGGGCTATCA  400

seq1  CTCTTGGTCGGCAGAGAGCAACTTCAGGAGCCACGTCCAGGCCTTGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTCGGCAGAGAGCAACTTCAGGAGCCACGTCCAGGCCTTGTTCT  450

seq1  CTGTGGCTTTCAGGGCTTTCCAGCATGATGTTGATATATGATGATGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTTTCAGGGCTTTCCAGCATGATGTTGATATATGATGATGCCCT  500

seq1  ACCCATCCTCACAGACTCCAGTCCCATCCAAGGACTCTAGAAACTGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCCTCACAGACTCCAGTCCCATCCAAGGACTCTAGAAACTGACAC  550

seq1  AGATGCACACACACAGATACACACACACAGAGACACAGACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACACACACAGATACACACACACAGAGACACAGACACACACACAC  600

seq1  ACACAGACACACACACACACAGAGACACACACACCAGGAGGAAGGGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACACACACACACAGAGACACACACACCAGGAGGAAGGGAGCA  650

seq1  AAGACAGAGACAAATCCACCCACATCAGGCTCTTTGGTGAGCCCCACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGACAAATCCACCCACATCAGGCTCTTTGGTGAGCCCCACAGA  700

seq1  ATCAGCCATGGGAAGCTGGAGGCTGAGGGAGAAGCACATGGCCTCCCCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCATGGGAAGCTGGAGGCTGAGGGAGAAGCACATGGCCTCCCCGT  750

seq1  GACCCTTGGTGGCCAGGCAAGGATAGGGCCAACAGAGGTTTCTGACAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTGGTGGCCAGGCAAGGATAGGGCCAACAGAGGTTTCTGACAGCT  800

seq1  TCCAGCTCTAAATGACACCCACAGAATTCACTAGAGCCACCAGTCCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCTAAATGACACCCACAGAATTCACTAGAGCCACCAGTCCAGGG  850

seq1  TCTGTTCCCACACAGTATAGAGACCTTAGCAAACATACCTCACACACCCT  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCACACAGTATAGAGACCTTAGCAAACATACCTCACACACCCT  900

seq1  TTACCAGAAAGACAAAGTGTCACGCCAAGGGACACAGCAGGCACCAACAT  950
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  TTACCAGAAAGACAAAGTGTCACGCC-AGGGACACAGCAAGCACCAACAT  949

seq1  AGAAGCACACAGTGATTCAGCCAGACACCAACCTGCCGGGCCTGCTCTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAAGCACACAGTGATTCAGCCAGACACCAACCTGCCGGGCCTGCTCTT-  998

seq1  AAACTGGCAACAGACAGAGCTGTAAGAATTTAGTTCTAGTCA-TTTTTGT  1049
      |||||||| ||||||||||||||||| |||||| |||||||| |||||||
seq2  AAACTGGC-ACAGACAGAGCTGTAAG-ATTTAG-TCTAGTCATTTTTTGT  1045

seq1  CATAGCAACACAGAGACACCACCAGCACAGGAGGCCAGAATACCATCTAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAACACAGAGACACCACCAGCACAGGAGGCCAGAATACCATCTAC  1095

seq1  ATTCCAAGCCTCATCTCTTTGAGACAAATACCAATAGGTATCCCTCCCTG  1149
      ||||  ||||||||||||| |||||||||||||||| |||| ||||||| 
seq2  ATTC--AGCCTCATCTCTTGGAGACAAATACCAATAAGTAT-CCTCCCT-  1141

seq1  GAAGAAGCCAAGTGTCCCAGGCCTTGCAGATGAGGTGCCTTGACTACCTC  1199
      |||||   ||||||||| |||| ||||||| |||| ||||||||   || 
seq2  GAAGA--GCAAGTGTCCAAGGCTTTGCAGA-GAGGGGCCTTGAC--ACTT  1186

seq1  CATGACATGCCTACATAGTCTTAGTCCCCAGCTGTCCATGAGCCACTAGT  1249
      | |||| ||||||||||  |||||||| |    || | ||| |    |  
seq2  CTTGACTTGCCTACATAACCTTAGTCCAC----GTTCTTGAAC----ATA  1228

seq1  GGCTGCACTCA  1260
       ||||||||||
seq2  TGCTGCACTCA  1239

seq1: chr2_179805859_179806888
seq2: B6Ng01-038P08.g_67_1093 (reverse)

seq1  CTACTCAGAAATCTAAAG-GACCAGCATGGAACAGTTTCGGAGCTGTCGG  49
      | ||||||||||||||||  || ||||||| |||||||| || |||||||
seq2  CAACTCAGAAATCTAAAGAAACAAGCATGG-ACAGTTTC-GAACTGTCGG  48

seq1  GAGGTTTCCCTGCCTGCATGTGAACCAGTCTGGGACCTTGAGTGCTGGGT  99
      || |||||||||| |||| |||||||||||| ||||||||||||||| ||
seq2  GAAGTTTCCCTGCATGCAAGTGAACCAGTCT-GGACCTTGAGTGCTGAGT  97

seq1  CGGGGATTGGGTGGGAGGTGGCAGCTGTCCCTCCAGTCAGTCTGTCCCAC  149
      |||||||| ||||||| ||||||| |||||||||||||||||| ||||||
seq2  CGGGGATTAGGTGGGAAGTGGCAGATGTCCCTCCAGTCAGTCT-TCCCAC  146

seq1  AAGGCCCCATAGGGCAGGCACCCAGACAGCAGCGTTGTTGAACGCGTGCT  199
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGGCCCCATAGGGCAGGCACCCAGACAGCAGCGTTG-TGAACGCGTGCT  195

seq1  TTATTTTGTTTTTG-AGACAGGCTCTCCCTTGCTGGCCTGGCACCCAGAT  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTTTTTGAAGACAGGCTCTCCCTTGCTGGCCTGGCACCCAGAT  245

seq1  GCCTGTCTGGCTTCCGGAGTGCATCTGCCACCGCACACAGCAGGAACACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTGGCTTCCGGAGTGCATCTGCCACCGCACACAGCAGGAACACT  295

seq1  TACCCCCACCCCCGTGAATGGCATATAATTAAGTAAAAACCATGTAATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCACCCCCGTGAATGGCATATAATTAAGTAAAAACCATGTAATGT  345

seq1  GAGTTGTCAGGTGACAAAATGATACTCCAGTTTCTAAATGTTTTCCACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTCAGGTGACAAAATGATACTCCAGTTTCTAAATGTTTTCCACAT  395

seq1  GAAGAACGAAGTAGATCACAAACATATGTAATGAAGTGTAAAAGTATGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACGAAGTAGATCACAAACATATGTAATGAAGTGTAAAAGTATGTA  445

seq1  GCAGAAACAGTAATGCCCGCGTGGGATTTAATATCCGGTAGCAAAGTGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACAGTAATGCCCGCGTGGGATTTAATATCCGGTAGCAAAGTGAA  495

seq1  AATGGAATGCTTAGAATTAAGTTAGTTAACTGTGAATACTGTTAACCAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATGCTTAGAATTAAGTTAGTTAACTGTGAATACTGTTAACCAAT  545

seq1  TGTGCTTAGCCTATAAAAGAATAACACTGAAGAAATGAAAACATTCCTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTAGCCTATAAAAGAATAACACTGAAGAAATGAAAACATTCCTCA  595

seq1  AGAATGCTTTTTTTTTTCCCCCTTTCTCTTTTTTTAAGACAGGTTTGCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTTTTTTTTTTCCCCCTTTCTCTTTTTTTAAGACAGGTTTGCAT  645

seq1  GTGTCTGGCTCCCTGGCTGGCCTTGAACTTGCTAAGTAGTAGAAGATGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGCTCCCTGGCTGGCCTTGAACTTGCTAAGTAGTAGAAGATGAC  695

seq1  CTTGAACTTCTGACCTTCCTACCTCCACCTCCTGAGTAAGTGGTGGCATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTTCTGACCTTCCTACCTCCACCTCCTGAGTAAGTGGTGGCATG  745

seq1  CCTGGATTATGTGATTCCAGGGGTCAACCCCAGGGCTTTGTGCATGCTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTATGTGATTCCAGGGGTCAACCCCAGGGCTTTGTGCATGCTAG  795

seq1  GTCGGTAGGCATTCTACCAACTGAGCTACACCCCTCTTCCACAGTGCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTAGGCATTCTACCAACTGAGCTACACCCCTCTTCCACAGTGCTTT  845

seq1  CTTCTTTCTCATTGAAGACATCTTGGCACATGTCTCTAGTGCCAGCTACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTCATTGAAGACATCTTGGCACATGTCTCTAGTGCCAGCTACA  895

seq1  CAATCAGATCAATCGGTTCACTGTGAAACTAGTGCGGAAGGTTCCTGGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGATCAATCGGTTCACTGTGAAACTAGTGCGGAAGGTTCCTGGAC  945

seq1  ACACCTCTTGTGGACAGTAGCCGGGAGCTTAGCATCCTGTATAGCAGCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCTTGTGGACAGTAGCCGGGAGCTTAGCATCCTGTATAGCAGCAG  995

seq1  TGGCCCTCTCACACGGTAGCACCGTGGAATTC  1030
      ||||||||||||||||||||||||||||||||
seq2  TGGCCCTCTCACACGGTAGCACCGTGGAATTC  1027