BAC Information

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BAC

Clone NameB6Ng01-039A12
Chromosome2 (Build37)
Map Location 90,788,059 - 90,827,964
singlet/doubletdoublet
Overlap geneCugbp1
Upstream geneOlfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1
Downstream geneLOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039A12.bB6Ng01-039A12.g
ACCDH866420DH866421
length1,2021,103
definitionDH866420|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A12, 5' end.DH866421|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,826,762 - 90,827,964)(90,788,059 - 90,789,186)
sequence
gaattcaaagagcaatgatccaccatcatttctggaaggaaatccaactt
aaacgcagccatcacctcactctccccttcagaagccaatgataataact
tgctgcacttgtctgatccacaaatatacacagctttagcttcctgggcc
ccacaaaaaacacaaagtggaaacggagctcagggaaaccagcagtaagt
gccacagaaagaggcaggtctggggaaggggctgggaaagggagtattgg
actgaaatggggatgcgaccatgtgaagggaggctcagctcagcacacaa
tgaaagtgctgatgcaccaggcttgttttgtgtgattttccctggcgaag
cagtactaagtgcactgtcagataaatagtgtgtcagattcatgaagata
gtgtagccaacaaagcagaagaaacacaaacttgtttcacatcatccaaa
gtcctccctataaatcagatttaaggccccacagatctaaaattacctga
aggaaaaagcaaataggcaaaacaaaacaacagcaacaacaacaacaaaa
agtaaccaagaagcctacctcacctcatgtggtgaaaacacttttaaaga
gctaattgttggccttgggtttaaacttagtctccatgtgtttgaagact
gcaataaacagggttcaaattaatcccataacagtcacaaaagaaggaac
aatttgctattactcacacctgtcctgtgtgatttgaacagaaagaagta
agaccaagagaagcaggctgttggagaaactggccatctaaaccctgcta
ctgaccaactacttctgccacactggccctgttctttttagacgtgctaa
ggataaagcaataaatcagtcgctcatcagacaggccttttaaaccctgg
gttagtatcactcactaggtggacacaggcaaaatatgtttactcttctg
aatctttactagaaattaaagggacagtatattatatatttatatatata
ataatagtaatattctgcacacacacacaaccccttaaccatgtagtcct
ggctggtctaggaacttgatctgtagacaaggcctggcctcaaactcaga
gctccactgcttctgccctggaagagattgggattaaacatgggtgccca
ctaatctacggaccttcttaatgaaacaaaaaaccaagcagtaggtgatc
at
gaattccttaaacaacattttcttttctccttttttctttatttccccca
atcctttattttttttaattttttttaaagatttatttatttattatatg
taagtacactgtagttgtcttaagacacaccagaagagagtttcagatct
cgttacagatggtagtgagccaccatgtggttgctgggatttgaactcgg
gacctttggaagagcagtcagtgctcttaactgctgagccatctcaccag
cccccccccccccccaatgaaattttattcgtgtgtatatgtgtctttgt
ctgccagtattagcaggggccagagagggcattggatctactgagctgac
tgacatggaatttgaactagcatcatctagaaaagcaaccagtgctctta
actgctgagccatctctcctgagacatcccttgtttcggaggcagtctct
cattcatgtagcctaagtccaattttgtatgtagccaatgatgactttga
actctttttctttttttttaagatttatttattgttatatgtagatatac
tgtagctgtcttcagacaccccagaagagggcatcagatctcattataga
tggttgtgagccaccatgtggttgctgggatttgaactcaggtcctttag
aagagcagtcaatattcctaaccgctgagccatctctccggcccccgcct
ttgaactcttgatctttatgcctgagcttttcaaatgttgacacatatgc
ttgataaccttttcttggctttttaaaaactttattttgtgtgtgcctac
atttgtttgcagctgggcgtggtggcacacacctttaatcccagctttaa
tccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagc
cagggctacacagagaaaccctgtctcgaaaacaaaacaaaacaaaacaa
acccatttgtttgcagtgtgccatgtctggacaagagacctacgccactg
tgtagtggttttctctcatcttacatgagttggagtcaattcagctcatt
agactggtggtggcagctagtcttctacctttaaagttgggtagggtaag
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_90826762_90827964
seq2: B6Ng01-039A12.b_44_1245 (reverse)

seq1  ATGATCA-CTACTGGCTTTTGTTTTTTTGTTTCATTAGAAAGGTCAGTAG  49
      ||||||| ||||||    ||| |||||||||||||||  |||||| ||||
seq2  ATGATCACCTACTG---CTTGGTTTTTTGTTTCATTAAGAAGGTCCGTAG  47

seq1  ATTAGTGGG-GCACATGTTTAATCCCAAT-ACTTTCAAGGCAGAAGCAGG  97
      |||||||||  | ||||||||||||||||  ||| || |||||||||| |
seq2  ATTAGTGGGCACCCATGTTTAATCCCAATCTCTTCCAGGGCAGAAGCA-G  96

seq1  TGGAGCTCTGAGTTTTGAGGCCAGG-CTAGTCTACAGATCAAGTT-CTAG  145
      |||||||||||| |||||||||||| || |||||||||||||||| ||||
seq2  TGGAGCTCTGAG-TTTGAGGCCAGGCCTTGTCTACAGATCAAGTTCCTAG  145

seq1  GACAGCCAGGGCTACATGG-TAAGGGG-TGTGTGTGTGTGCAGAATATTA  193
        |||||||| |||||||| ||||||| ||||||||||||||||||||||
seq2  ACCAGCCAGGACTACATGGTTAAGGGGTTGTGTGTGTGTGCAGAATATTA  195

seq1  CTATTATTATATAATAT-AATATATAATATTACTGTTCCTTTTAATTTCT  242
      |||||||||||| |||| ||||||||||| ||||| ||| ||||||||||
seq2  CTATTATTATAT-ATATAAATATATAATA-TACTG-TCCCTTTAATTTCT  242

seq1  AGTAAAGATTCAGAAGAGTAAACATATTTTGCCTGTGTCCACCTAGTGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGATTCAGAAGAGTAAACATATTTTGCCTGTGTCCACCTAGTGAG  292

seq1  TGATACTAACCCAGGGTTTTAAAAGGCCTGTCTGATGAGCGACTGATTTA  342
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGATACTAACCCAGGG-TTTAAAAGGCCTGTCTGATGAGCGACTGATTTA  341

seq1  TTGCTTTATCCTTAGCACGTCTAAAAAGAACAGGGCCAGTGTGGCAGAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATCCTTAGCACGTCTAAAAAGAACAGGGCCAGTGTGGCAGAAG  391

seq1  TAGTTGGTCAGTAGCAGGGTTTAGATGGCCAGTTTCTCCAACAGCCTGCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGTCAGTAGCAGGGTTTAGATGGCCAGTTTCTCCAACAGCCTGCT  441

seq1  TCTCTTGGTCTTACTTCTTTCTGTTCAAATCACACAGGACAGGTGTGAGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGTCTTACTTCTTTCTGTTCAAATCACACAGGACAGGTGTGAGT  491

seq1  AATAGCAAATTGTTCCTTCTTTTGTGACTGTTATGGGATTAATTTGAACC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAATTGTTCCTTCTTTTGTGACTGTTATGGGATTAATTTGAACC  541

seq1  CTGTTTATTGCAGTCTTCAAACACATGGAGACTAAGTTTAAACCCAAGGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATTGCAGTCTTCAAACACATGGAGACTAAGTTTAAACCCAAGGC  591

seq1  CAACAATTAGCTCTTTAAAAGTGTTTTCACCACATGAGGTGAGGTAGGCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTAGCTCTTTAAAAGTGTTTTCACCACATGAGGTGAGGTAGGCT  641

seq1  TCTTGGTTACTTTTTGTTGTTGTTGTTGCTGTTGTTTTGTTTTGCCTATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTACTTTTTGTTGTTGTTGTTGCTGTTGTTTTGTTTTGCCTATT  691

seq1  TGCTTTTTCCTTCAGGTAATTTTAGATCTGTGGGGCCTTAAATCTGATTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTCCTTCAGGTAATTTTAGATCTGTGGGGCCTTAAATCTGATTT  741

seq1  ATAGGGAGGACTTTGGATGATGTGAAACAAGTTTGTGTTTCTTCTGCTTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAGGACTTTGGATGATGTGAAACAAGTTTGTGTTTCTTCTGCTTT  791

seq1  GTTGGCTACACTATCTTCATGAATCTGACACACTATTTATCTGACAGTGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTACACTATCTTCATGAATCTGACACACTATTTATCTGACAGTGC  841

seq1  ACTTAGTACTGCTTCGCCAGGGAAAATCACACAAAACAAGCCTGGTGCAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTACTGCTTCGCCAGGGAAAATCACACAAAACAAGCCTGGTGCAT  891

seq1  CAGCACTTTCATTGTGTGCTGAGCTGAGCCTCCCTTCACATGGTCGCATC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTTCATTGTGTGCTGAGCTGAGCCTCCCTTCACATGGTCGCATC  941

seq1  CCCATTTCAGTCCAATACTCCCTTTCCCAGCCCCTTCCCCAGACCTGCCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCAGTCCAATACTCCCTTTCCCAGCCCCTTCCCCAGACCTGCCT  991

seq1  CTTTCTGTGGCACTTACTGCTGGTTTCCCTGAGCTCCGTTTCCACTTTGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGGCACTTACTGCTGGTTTCCCTGAGCTCCGTTTCCACTTTGT  1041

seq1  GTTTTTTGTGGGGCCCAGGAAGCTAAAGCTGTGTATATTTGTGGATCAGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTGGGGCCCAGGAAGCTAAAGCTGTGTATATTTGTGGATCAGA  1091

seq1  CAAGTGCAGCAAGTTATTATCATTGGCTTCTGAAGGGGAGAGTGAGGTGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAGCAAGTTATTATCATTGGCTTCTGAAGGGGAGAGTGAGGTGA  1141

seq1  TGGCTGCGTTTAAGTTGGATTTCCTTCCAGAAATGATGGTGGATCATTGC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCGTTTAAGTTGGATTTCCTTCCAGAAATGATGGTGGATCATTGC  1191

seq1  TCTTTGAATTC  1203
      |||||||||||
seq2  TCTTTGAATTC  1202

seq1: chr2_90788059_90789186
seq2: B6Ng01-039A12.g_67_1169

seq1  GAATTCCTTAAACAACATTTTCTTTTCTCCTTTTTTCTTTATTTCCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAACAACATTTTCTTTTCTCCTTTTTTCTTTATTTCCCCCA  50

seq1  ATCCTTTATTTTTTTTAATTTTTTTTAAAGATTTATTTATTTATTATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTATTTTTTTTAATTTTTTTTAAAGATTTATTTATTTATTATATG  100

seq1  TAAGTACACTGTAGTTGTCTTAAGACACACCAGAAGAGAGTTTCAGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACACTGTAGTTGTCTTAAGACACACCAGAAGAGAGTTTCAGATCT  150

seq1  CGTTACAGATGGTAGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACAGATGGTAGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGG  200

seq1  GACCTTTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCACCAG  250

seq1  -CCCCCCCCCCCCCCAATGAAATTTTATTCGTGTGTATATGTGTCTTTGT  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCAATGAAATTTTATTCGTGTGTATATGTGTCTTTGT  300

seq1  CTGCCAGTATTAGCAGGGGCCAGAGAGGGCATTGGATCTACTGAGCTGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTATTAGCAGGGGCCAGAGAGGGCATTGGATCTACTGAGCTGAC  350

seq1  TGACATGGAATTTGAACTAGCATCATCTAGAAAAGCAACCAGTGCTCTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGAATTTGAACTAGCATCATCTAGAAAAGCAACCAGTGCTCTTA  400

seq1  ACTGCTGAGCCATCTCTCCTGAGACATCCCTTGTTTCGGAGGCAGTCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGCCATCTCTCCTGAGACATCCCTTGTTTCGGAGGCAGTCTCT  450

seq1  CATTCATGTAGCCTAAGTCCAATTTTGTATGTAGCCAATGATGACTTTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGTAGCCTAAGTCCAATTTTGTATGTAGCCAATGATGACTTTGA  500

seq1  ACTCTTTTTCTTTTTTTTTAAGATTTATTTATTGTTATATGTAGATATAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTTCTTTTTTTTTAAGATTTATTTATTGTTATATGTAGATATAC  550

seq1  TGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATAGA  600

seq1  TGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGTCCTTTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGTCCTTTAG  650

seq1  AAGAGCAGTCAATATTCCTAACCGCTGAGCCATCTCTCCGGCCCCCGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTCAATATTCCTAACCGCTGAGCCATCTCTCCGGCCCCCGCCT  700

seq1  TTGAACTCTTGATCTTTATGCCTGAGCTTTTCAAATGTTGACACATATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCTTGATCTTTATGCCTGAGCTTTTCAAATGTTGACACATATGC  750

seq1  TTGATAACCTTTTCTTGGCTTTTTAAAAACTTTATTTTGTGTGTGCCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAACCTTTTCTTGGCTTTTTAAAAACTTTATTTTGTGTGTGCCTAC  800

seq1  ATTTGTTTGCAGCTGGGCGTGGTGGCACACACCTTTAATCCCAGCTTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTGCAGCTGGGCGTGGTGGCACACACCTTTAATCCCAGCTTTAA  850

seq1  TCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAG  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAG  899

seq1  CCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAACAAAACAAAAC  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCAGGGCTACACAGAGAAACCCTGTCTCG-AAAACAAAACAAAACAAAAC  948

seq1  AAAACCCATTTGTTTGCAGGTGTGCCATGTCTTGAACAAAGAGAACCTAG  999
       ||||||||||||||||| ||||||||||||| ||   ||||| ||||| 
seq2  -AAACCCATTTGTTTGCA-GTGTGCCATGTCTGGA--CAAGAG-ACCTAC  993

seq1  GGCAACTTGTGGTAGTTGGTTTTCTTCTTCCATCTTTACATGGAGTTTGG  1049
      | ||   ||| |||| |||||||| |||  |||| |||||| |||||  |
seq2  GCCA--CTGT-GTAG-TGGTTTTC-TCT--CATC-TTACAT-GAGTT--G  1032

seq1  AAGTCAAATTCAGCTCATTAGACTTGTGTGGTGGCAGCTAGTTCTTCTAC  1099
       |||| ||||||||||||||||||   |||||||||||||| ||||||||
seq2  GAGTC-AATTCAGCTCATTAGACT--GGTGGTGGCAGCTAG-TCTTCTAC  1078

seq1  CTTTTTAAAAGTTGGGTAGGGTATAGTGG  1128
      ||||   |||||||||||||||| |||||
seq2  CTTT---AAAGTTGGGTAGGGTA-AGTGG  1103