BAC Information

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BAC

Clone NameB6Ng01-039C21
Chromosome2 (Build37)
Map Location 114,599,876 - 114,725,406
singlet/doubletdoublet
Overlap geneLOC100043222
Upstream geneScg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4, LOC100043219
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039C21.bB6Ng01-039C21.g
ACCDH866522DH866523
length1,1461,157
definitionDH866522|Mus musculus domesticus DNA, BAC clone: B6Ng01-039C21, 5' end.DH866523|Mus musculus domesticus DNA, BAC clone: B6Ng01-039C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,724,258 - 114,725,406)(114,599,876 - 114,601,052)
sequence
gaattcatgatttaacctccattcaccacctctcaactaaaaattaattg
ccatcttaggagtcatatttcttttgataaaattaatatattttataatt
ttctctttaagatacttgctttatgaaatgctttttttgatatctaacaa
atcttactgtagattatttttttcttctggaaaagaacaatcatttctgc
cagcagaaagtgactgtgaagatatatctctactcaaacacacttacgga
tgtcactgcctcacccatgcctgcttccatcttttcttcatattctatag
gacaataacagttccttcctggaacaaaaacatggctaagatcatgtcta
ttatttgctgcttgcagatattaattttaagaaacagtaaaagctgacag
tagtacccatatagtagtagtcaatattacaaatatatatcacttgaatg
tggctgctgctattgaaatgaaactttccctagtctggaggaaatataaa
tatcctatagctcaccaaacaaacttctcatttagacatcttggattgta
ttttaatatacctaacagagtctcaacaaatggatgttaggtgggctgtc
tgtaataacgaactccccaacctctagagatgcaggacatctgctcagac
caaatgtgttgttagtgaagctcccacactctggagacatatgtacagaa
ccaatgtgaaaataacaagtttcaagctcttcaaatggttcctagtgagc
cagtaaagaagcattaaccatcacaatgtaggataaatccttctgcaaca
cacacgattcaaaccctttctaacagcatttgatagacaaagacagctaa
tataccttgtcattgtagaaaggggaaatgataaatttttacatagagaa
tgttatggtttcttatataaatccagtggtacattaagatggaagagtag
agaagaaaatcgggtctttgtagtgatttatatttatgatttcttataaa
caagatttcctgtcctttctttttaatgctgaatgataaattggattgtg
gttttcttacttgtccttataaaaaatatgcccagacttcagcagcagca
cggttctcctgtcctatggttagcacgcatgataaccttctttgga
gaattcttgctggcgagatactagctcgggatacatactaataaagtgga
aaaacaatccaaattcagaaaaagagaacaacatggatttgagggttatt
agtgtaaatttgttgtggtggattgatgaaaagtacaaaggaagaatgaa
cattcaaaaacataaaagaatgagataggcaaatacatacgttcctgggg
ctgagaaaggaaaagaaatggcttaataatgaatcagaatcagattaggg
ggaaagtctccaaaatggacattgtcagctctttgtcatactttggcttg
gctttcctgttaacaacccaagagttcattgaaatggtgttgtgcaatct
agtagtgattaacctgacttactggtgacactgttttagaaaaacaggac
tctaggtcaggagcaatggtactctgattgtctaatctctggatcgttac
aaagttgtctcggtttaaatgagcaaaatttagtttaagcctgccctatt
gaatatttaagacatacttatcttgaaaactatttaccagttgcctagtc
agttaactattttttctggctaacactgataactctagtcattatcatct
tgacaaggaagagcaattcagttttggcttgtggtcctatgtaaccaaaa
tagtctacaatgagtactttcttctatttaggaccctggtgtgagatttg
attggcccattggataatttctgatcactctatatctacctgctaataaa
aaatcaacctattatcgatgtttattactatttctacttattatttatgt
atcatcattgtcgtcatcgttgttgttgtcctcagtagtagtagcaggtt
ttccttaggatgggagtccttatctcaaagccctttgacatctaattgct
cccaattgtgttttcgatttcaagcagtagtttgtttctaagaaatcaca
gtttgatagatttttcaagtaactcagcattctataaatgatgtaaggag
cattttttaaaaaatatctttacaaagaatacaagactcgaaaaaaaaca
aacctcctttattggatccactggtatattaacgaattctttgacctcaa
cacaggaaaactgattagtcaataagcgaagaaatccactgagacatgat
cagcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114724258_114725406
seq2: B6Ng01-039C21.b_46_1191 (reverse)

seq1  TCCAAAGAAGTTAATCACTGCGTGCTAAACACTAGGACAGGAGAA-CGTG  49
      |||||||||| | |||| |||||||||| || ||||||||||||| ||||
seq2  TCCAAAGAAGGTTATCA-TGCGTGCTAACCA-TAGGACAGGAGAACCGTG  48

seq1  CTGCTGCTGAAGTCTGGGCATATTTTTTATAAGGACAAGTAAGAAAA-CA  98
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGCTGCTGAAGTCTGGGCATATTTTTTATAAGGACAAGTAAGAAAACCA  98

seq1  CAATCCAATTTATCATTCAGCATTAAAAAAGAAAGGACAGGAAATCTTGT  148
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAATCCAATTTATCATTCAGCATT-AAAAAGAAAGGACAGGAAATCTTGT  147

seq1  TTATAAGAAATCATAAATATAAATCACTACAAAGACCCGATTTTCTTCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAAATCATAAATATAAATCACTACAAAGACCCGATTTTCTTCTC  197

seq1  TACTCTTCCATCTTAATGTACCACTTGGATTTATATAAGAAACCATAACA  248
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACTCTTCCATCTTAATGTACCAC-TGGATTTATATAAGAAACCATAACA  246

seq1  TTCTCTATGTAAAAATTTATCATTTTCCCCTTTCTACAATGACAAGGTAT  298
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCTCTATGTAAAAATTTATCA-TTTCCCCTTTCTACAATGACAAGGTAT  295

seq1  ATTAGCTGTCTTTGTCTATCAAATGCTGTTAGAAAGGGTTTGAATCGTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGTCTTTGTCTATCAAATGCTGTTAGAAAGGGTTTGAATCGTGT  345

seq1  GTGTTGCAGAAGGATTTATCCTACATTGTGATGGTTAATGCTTCTTTACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCAGAAGGATTTATCCTACATTGTGATGGTTAATGCTTCTTTACT  395

seq1  GGCTCACTAGGAACCATTTGAAGAGCTTGAAACTTGTTATTTTCACATTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACTAGGAACCATTTGAAGAGCTTGAAACTTGTTATTTTCACATTG  445

seq1  GTTCTGTACATATGTCTCCAGAGTGTGGGAGCTTCACTAACAACACATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTACATATGTCTCCAGAGTGTGGGAGCTTCACTAACAACACATTT  495

seq1  GGTCTGAGCAGATGTCCTGCATCTCTAGAGGTTGGGGAGTTCGTTATTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGCAGATGTCCTGCATCTCTAGAGGTTGGGGAGTTCGTTATTAC  545

seq1  AGACAGCCCACCTAACATCCATTTGTTGAGACTCTGTTAGGTATATTAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCCACCTAACATCCATTTGTTGAGACTCTGTTAGGTATATTAAA  595

seq1  ATACAATCCAAGATGTCTAAATGAGAAGTTTGTTTGGTGAGCTATAGGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATCCAAGATGTCTAAATGAGAAGTTTGTTTGGTGAGCTATAGGAT  645

seq1  ATTTATATTTCCTCCAGACTAGGGAAAGTTTCATTTCAATAGCAGCAGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTTCCTCCAGACTAGGGAAAGTTTCATTTCAATAGCAGCAGCC  695

seq1  ACATTCAAGTGATATATATTTGTAATATTGACTACTACTATATGGGTACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAAGTGATATATATTTGTAATATTGACTACTACTATATGGGTACT  745

seq1  ACTGTCAGCTTTTACTGTTTCTTAAAATTAATATCTGCAAGCAGCAAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGCTTTTACTGTTTCTTAAAATTAATATCTGCAAGCAGCAAATA  795

seq1  ATAGACATGATCTTAGCCATGTTTTTGTTCCAGGAAGGAACTGTTATTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATGATCTTAGCCATGTTTTTGTTCCAGGAAGGAACTGTTATTGT  845

seq1  CCTATAGAATATGAAGAAAAGATGGAAGCAGGCATGGGTGAGGCAGTGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGAATATGAAGAAAAGATGGAAGCAGGCATGGGTGAGGCAGTGAC  895

seq1  ATCCGTAAGTGTGTTTGAGTAGAGATATATCTTCACAGTCACTTTCTGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTAAGTGTGTTTGAGTAGAGATATATCTTCACAGTCACTTTCTGCT  945

seq1  GGCAGAAATGATTGTTCTTTTCCAGAAGAAAAAAATAATCTACAGTAAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAATGATTGTTCTTTTCCAGAAGAAAAAAATAATCTACAGTAAGA  995

seq1  TTTGTTAGATATCAAAAAAAGCATTTCATAAAGCAAGTATCTTAAAGAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGATATCAAAAAAAGCATTTCATAAAGCAAGTATCTTAAAGAGA  1045

seq1  AAATTATAAAATATATTAATTTTATCAAAAGAAATATGACTCCTAAGATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAAAATATATTAATTTTATCAAAAGAAATATGACTCCTAAGATG  1095

seq1  GCAATTAATTTTTAGTTGAGAGGTGGTGAATGGAGGTTAAATCATGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAATTTTTAGTTGAGAGGTGGTGAATGGAGGTTAAATCATGAATT  1145

seq1  C  1149
      |
seq2  C  1146

seq1: chr2_114599876_114601052
seq2: B6Ng01-039C21.g_64_1220

seq1  GAATTCTTGCTGGCGAGATACTAGCTCGGGATACATACTAATAAAGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGGCGAGATACTAGCTCGGGATACATACTAATAAAGTGGA  50

seq1  AAAACAATCCAAATTCAGAAAAAGAGAACAACATGGATTTGAGGGTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATCCAAATTCAGAAAAAGAGAACAACATGGATTTGAGGGTTATT  100

seq1  AGTGTAAATTTGTTGTGGTGGATTGATGAAAAGTACAAAGGAAGAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAATTTGTTGTGGTGGATTGATGAAAAGTACAAAGGAAGAATGAA  150

seq1  CATTCAAAAACATAAAAGAATGAGATAGGCAAATACATACGTTCCTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAAAACATAAAAGAATGAGATAGGCAAATACATACGTTCCTGGGG  200

seq1  CTGAGAAAGGAAAAGAAATGGCTTAATAATGAATCAGAATCAGATTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGGAAAAGAAATGGCTTAATAATGAATCAGAATCAGATTAGGG  250

seq1  GGAAAGTCTCCAAAATGGACATTGTCAGCTCTTTGTCATACTTTGGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCTCCAAAATGGACATTGTCAGCTCTTTGTCATACTTTGGCTTG  300

seq1  GCTTTCCTGTTAACAACCCAAGAGTTCATTGAAATGGTGTTGTGCAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTGTTAACAACCCAAGAGTTCATTGAAATGGTGTTGTGCAATCT  350

seq1  AGTAGTGATTAACCTGACTTACTGGTGACACTGTTTTAGAAAAACAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGATTAACCTGACTTACTGGTGACACTGTTTTAGAAAAACAGGAC  400

seq1  TCTAGGTCAGGAGCAATGGTACTCTGATTGTCTAATCTCTGGATCGTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTCAGGAGCAATGGTACTCTGATTGTCTAATCTCTGGATCGTTAC  450

seq1  AAAGTTGTCTCGGTTTAAATGAGCAAAATTTAGTTTAAGCCTGCCCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTCTCGGTTTAAATGAGCAAAATTTAGTTTAAGCCTGCCCTATT  500

seq1  GAATATTTAAGACATACTTATCTTGAAAACTATTTACCAGTTGCCTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTAAGACATACTTATCTTGAAAACTATTTACCAGTTGCCTAGTC  550

seq1  AGTTAACTATTTTTTCTGGCTAACACTGATAACTCTAGTCATTATCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTATTTTTTCTGGCTAACACTGATAACTCTAGTCATTATCATCT  600

seq1  TGACAAGGAAGAGCAATTCAGTTTTGGCTTGTGGTCCTATGTAACCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGAAGAGCAATTCAGTTTTGGCTTGTGGTCCTATGTAACCAAAA  650

seq1  TAGTCTACAATGAGTACTTTCTTCTATTTAGGACCCTGGTGTGAGATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACAATGAGTACTTTCTTCTATTTAGGACCCTGGTGTGAGATTTG  700

seq1  ATTGGCCCATTGGATAATTTCTGATCACTCTATATCTACCTGCTAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCCATTGGATAATTTCTGATCACTCTATATCTACCTGCTAATAAA  750

seq1  AAATCAACCTATTATCGATGTTTATTACTATTTCTACTTATTATTTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACCTATTATCGATGTTTATTACTATTTCTACTTATTATTTATGT  800

seq1  ATCATCATTGTCGTCATCGTTGTTGTTGTCCTCAGTAGTAGTAGCAGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATTGTCGTCATCGTTGTTGTTGTCCTCAGTAGTAGTAGCAGGTT  850

seq1  TTCCTTAGGATGGGAGTCCTTATCTCAAAGCCCTTTGACATCTAATTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGGATGGGAGTCCTTATCTCAAAGCCCTTTGACATCTAATTGCT  900

seq1  CCCAATTGTGTTTTCGATTTCAAGCAGTTAGTTTGTTTCTAAGAAATCAC  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCAATTGTGTTTTCGATTTCAAGCAG-TAGTTTGTTTCTAAGAAATCAC  949

seq1  AGTTTTGATAGATTTTTCAAGTAACTCAGCATTCTATAAATGATGTTAGG  1000
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AG-TTTGATAGATTTTTCAAGTAACTCAGCATTCTATAAATGATGTAAGG  998

seq1  AGCATTTTTTAAAAAAATATCTTTACAAAGAATACAAGACCTCGAACAAA  1050
      |||||||||| |||||||||||||||||||||||||||| |||||| |||
seq2  AGCATTTTTT-AAAAAATATCTTTACAAAGAATACAAGA-CTCGAA-AAA  1045

seq1  AAACAAAACCTCCTTTTATTGAATCCACTGGTAAATATTAAACGAATTCT  1100
      |||| |||||||| ||||||| ||||||||||  ||||| ||||||||||
seq2  AAAC-AAACCTCC-TTTATTGGATCCACTGGT--ATATT-AACGAATTCT  1090

seq1  TTGACTACAAACAACAGGAACAACTGAATAAGTCAATAAGGCAGAAGAAA  1150
      |||||  |||   ||||||| ||||| || ||||||||||   |||||||
seq2  TTGACCTCAA--CACAGGAA-AACTG-ATTAGTCAATAAG--CGAAGAAA  1134

seq1  TTCAACATGAGACATGATTAAAGCCTG  1177
      | ||   |||||||||||   ||||||
seq2  TCCA--CTGAGACATGAT--CAGCCTG  1157