BAC Information

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BAC

Clone NameB6Ng01-039C23
Chromosome2 (Build37)13 (Build37)
Map Location 142,634,429 - 142,635,65562,362,176 - 62,362,564
singlet/doubletsingletsinglet
Overlap geneKif16b
Upstream geneLOC668913, LOC668914
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039C23.bB6Ng01-039C23.g
ACCDH866526DH866527
length1,209206
definitionDH866526|Mus musculus domesticus DNA, BAC clone: B6Ng01-039C23, 5' end.DH866527|Mus musculus domesticus DNA, BAC clone: B6Ng01-039C23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,634,429 - 142,635,655)(62,362,176 - 62,362,564)
sequence
gaattcataattgttccagagcttttgacttggcttaatcccacttagcc
ttgacccttgttcagtagctcaactctttaccactaaaacacctcgcttc
tttaactctttggagccattctataagccccccccacacacacacacatg
catgcatgcatacataaatgtaaataaatatatatgacatataaaatata
tgtaatcaaatagttagtactttatatagactacctttgtacacagtcca
tgacactaaggtagtagtggctgctagaccctagtataaggagaaaactt
aagctcacaatgataaggagttaggccaggcttcaataccatattcacag
atcatggtagacattaactaccacccttagccctgcactacagggtagaa
cagtggggagggtaggaattgaactttaactgtgtataacttcaatagta
caagtgtaaagggcctaggaccagtcaagaaggaaagagccccatgtaga
ctgaggaatgtttcaaccttcatgactgccagcggtaccacagtactacc
aaccttattctaaagagacatgtgcctctccttttggctatcaaactgtt
gaaataatgtctccaaataattagaatatccccaggaatttcattctggg
agaaggtggctaggggcaggtgaccacatagaagaggaacttgtttccca
gagtccacacagttctgacaagttgtcttgcaagggactggatctgagac
aaggatgggtcaataataggcaggaccacacttctcccaggacactacgt
aaacctaaccccatgtcaagcgcccagaaaatgaatttgagacagggtgg
cagagaacccctccaacagtctctcttcccaatatggtccctgtatttta
ctatagcttctctctgtagttagtagatagagggtgggtactgcctactg
acttgacatcctaccctagccttgccaacctagtacttgtacacttccct
gagcagagccatcatcacctcagacagttttcatacacgctggaggccaa
ccttgggagcctaaggattgacatcagacctcagttgaattagcagcatt
cgaccaagaaactaggcccaccacctcaaattgatgcccttatctttaga
aagcagttctttaacgagaaaacaggcctttttttatagttataaaccat
ggaccccaa
ctagagatcctctttcctcttcctccagagttccggccctcatactgctt
tttttgtttgtttgttttgttttgagacagggtttctctgtagtcttgac
tgtcctggaactcactttgtagaccaggctggcctcggactcagaaatct
gcctgtctctgcctcccaagtgctgagtttaaaggcatgcaccaccactg
cccggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142634429_142635655
seq2: B6Ng01-039C23.b_40_1248

seq1  GAATTCATAATTGTTCCAGAGCTTTTGACTTGGCTTAATCCCACTTAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTGTTCCAGAGCTTTTGACTTGGCTTAATCCCACTTAGCC  50

seq1  TTGACCCTTGTTCAGTAGCTCAACTCTTTACCACTAAAACACCTCGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCTTGTTCAGTAGCTCAACTCTTTACCACTAAAACACCTCGCTTC  100

seq1  TTTAACTCTTTGGAGCCATTCTATAAGCCCCCCCCACACACACACACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCTTTGGAGCCATTCTATAAGCCCCCCCCACACACACACACATG  150

seq1  CATGCATGCATACATAAATGTAAATAAATATATATGACATATAAAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGCATACATAAATGTAAATAAATATATATGACATATAAAATATA  200

seq1  TGTAATCAAATAGTTAGTACTTTATATAGACTACCTTTGTACACAGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCAAATAGTTAGTACTTTATATAGACTACCTTTGTACACAGTCCA  250

seq1  TGACACTAAGGTAGTAGTGGCTGCTAGACCCTAGTATAAGGAGAAAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTAAGGTAGTAGTGGCTGCTAGACCCTAGTATAAGGAGAAAACTT  300

seq1  AAGCTCACAATGATAAGGAGTTAGGCCAGGCTTCAATACCATATTCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACAATGATAAGGAGTTAGGCCAGGCTTCAATACCATATTCACAG  350

seq1  ATCATGGTAGACATTAACTACCACCCTTAGCCCTGCACTACAGGGTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTAGACATTAACTACCACCCTTAGCCCTGCACTACAGGGTAGAA  400

seq1  CAGTGGGGAGGGTAGGAATTGAACTTTAACTGTGTATAACTTCAATAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGAGGGTAGGAATTGAACTTTAACTGTGTATAACTTCAATAGTA  450

seq1  CAAGTGTAAAGGGCCTAGGACCAGTCAAGAAGGAAAGAGCCCCATGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTAAAGGGCCTAGGACCAGTCAAGAAGGAAAGAGCCCCATGTAGA  500

seq1  CTGAGGAATGTTTCAACCTTCATGACTGCCAGCGGTACCACAGTACTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAATGTTTCAACCTTCATGACTGCCAGCGGTACCACAGTACTACC  550

seq1  AACCTTATTCTAAAGAGACATGTGCCTCTCCTTTTGGCTATCAAACTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTATTCTAAAGAGACATGTGCCTCTCCTTTTGGCTATCAAACTGTT  600

seq1  GAAATAATGTCTCCAAATAATTAGAATATCCCCAGGAATTTCATTCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATGTCTCCAAATAATTAGAATATCCCCAGGAATTTCATTCTGGG  650

seq1  AGAAGGTGGCTAGGGGCAGGTGACCACATAGAAGAGGAACTTGTTTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGGCTAGGGGCAGGTGACCACATAGAAGAGGAACTTGTTTCCCA  700

seq1  GAGTCCACACAGTTCTGACAAGTTGTCTTGCAAGGGACTGGATCTGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCACACAGTTCTGACAAGTTGTCTTGCAAGGGACTGGATCTGAGAC  750

seq1  AAGGATGGGTCAATAATAGGCAGGACCACACTTCTCCCAGGACACTACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGGTCAATAATAGGCAGGACCACACTTCTCCCAGGACACTACGT  800

seq1  AAACCTAACCCCATGTCAAGCGCCCAGAAAATGAATTTGAGACAGGGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAACCCCATGTCAAGCGCCCAGAAAATGAATTTGAGACAGGGTGG  850

seq1  CAGAGAACCCCTCCAACAGTCTCTCTTCCCAATATGGTCCCTGTATTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACCCCTCCAACAGTCTCTCTTCCCAATATGGTCCCTGTATTTTA  900

seq1  CTATAGCTTCTCTCTGTAGTTAGTAGATAGAGGGTGGGTACTGCCTACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTTCTCTCTGTAGTTAGTAGATAGAGGGTGGGTACTGCCTACTG  950

seq1  ACTTGACATCCTACCCTAGCCTTGCCAACCTAGTACTTGTACACTTCCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACATCCTACCCTAGCCTTGCCAACCTAGTACTTGTACACTTCCCT  1000

seq1  GAGCAAGAGCCATCATCACCTCAGAACAGTTTTCAATACACGCTGGAGGG  1050
      |||| ||||||||||||||||||| ||||||||| |||||||||||| ||
seq2  GAGC-AGAGCCATCATCACCTCAG-ACAGTTTTC-ATACACGCTGGA-GG  1046

seq1  CCAACC-TGGGAGCCTAAAGAATTGACATCAATACTCAGTTGATATAAAG  1099
      |||||| ||||||||| ||| ||||||||||   |||||||||  |  ||
seq2  CCAACCTTGGGAGCCT-AAGGATTGACATCAGACCTCAGTTGAATT--AG  1093

seq1  CAGCATTCGAACTCAAAGAAACTAAGCCCACCA-CTCACATTTGAATGCC  1148
      ||||||||||   | ||||||||| |||||||| |||| |||   |||||
seq2  CAGCATTCGA---CCAAGAAACTAGGCCCACCACCTCAAATT--GATGCC  1138

seq1  ATTATCTTTTAAGAGAGCAGTTTCCTTTAACGAGAACACTGCACCTTTTT  1198
       ||||||||  ||| |||||||  |||||||||||| || |  |   |||
seq2  CTTATCTTT--AGAAAGCAGTT--CTTTAACGAGAAAACAGGCC---TTT  1181

seq1  TTTTATAGTTTAATAACTATGGACCCCAA  1227
      |||||||| |||  ||| |||||||||||
seq2  TTTTATAG-TTATAAACCATGGACCCCAA  1209

seq1: chr13_62362176_62362564
seq2: B6Ng01-039C23.g_116_274

seq1  CTGCTTTTTTTGTTTGTTTG-TTTGTTTTGAGACAGGGTTTTTCTGTGTA  49
      |||||||||||||||||||| |||||||||||||||||  ||||| ||||
seq2  CTGCTTTTTTTGTTTGTTTGTTTTGTTTTGAGACAGGG--TTTCTCTGTA  48

seq1  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTC  99
      | | || ||||||||||||||||| |||||||||||||||||| | ||||
seq2  GTCTTGACTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGGACTC  98

seq1  AGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGC  149
      ||||||||||||| ||||||||||||||||||| | |||||||| ||  |
seq2  AGAAATCTGCCTGTCTCTGCCTCCCAAGTGCTGAGTTTAAAGGCATGCAC  148

seq1  CACCAC-GCCCGGCACTCCCCTGCTTTTTAAAATAAGTATATTATTATTA  198
      |||||| ||||                                       
seq2  CACCACTGCCC---------------------------------------  159

seq1  TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT  248
                                                        
seq2  --------------------------------------------------  159

seq1  TGGGGGTTCAAGACAGGGTTTCTCTGTGTTGTCCTGGCTGTCCTGGAACT  298
                                                        
seq2  --------------------------------------------------  159

seq1  CACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGC  348
                                                        
seq2  --------------------------------------------------  159

seq1  CTCTCAAGTGCTGGGATTAAAGGCATGTACCACCACTGCCC  389
                                               
seq2  -----------------------------------------  159