BAC Information

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BAC

Clone NameB6Ng01-039F16
Chromosome2 (Build37)
Map Location 126,758,305 - 126,875,181
singlet/doubletdoublet
Overlap gene2010106G01Rik, Ap4e1
Upstream geneGalk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7
Downstream geneBlvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039F16.bB6Ng01-039F16.g
ACCDH866647DH866648
length766253
definitionDH866647|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F16, 5' end.DH866648|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,874,422 - 126,875,181)(126,758,305 - 126,758,557)
sequence
gaattcttggattaatttctcaactaagggagaagaatgagcttgaggtg
tcaacttggttaccgcagcaaacaaccatgctttcgtttctgaagaaatg
gagtcactcataagtaacttgtagagcctggttataacctcctctggact
ttctttatctaagaggtaggagtactctcctaacacctagagtaaaacaa
aattagtatatatgtaaataccaagtcagacagtatgccaattcagactt
acagctagaatgaacttttatctgtgttatacatattttatgatgaatat
tattaaggaaacataaatcataccaagactgtaccctcaatgcaaaagaa
ctggaactcatcagtaacaatatataaagtaaaataagtttatatgctat
cattcttccgagtttccagatagacgctggtttattttccagtaaaaatg
taaacaggtggatctccaatgttagtaagattttacaaaatgaagatttc
tagcctgtctgcctgcctgcctgcctgccttctttccttccttgaaacag
ggtttctctgtgtaaccctggctgtcctacaactccctctgtagaccaga
ctgacctcgaactctgagatccacctgcctctgtctcccaagtgctgggg
attaaagggcgtgtgtgtccaccaccaccacccagtggtctcctcataaa
acagattttcttatttctctcctcaagtagtataatttcgtattgactgt
gggagaggaaccagag
tttgaattaagaagaaaagatgccagcacagtgaaaaattatagagaggg
ctccaggaccaaggaggaggaagctccccacccactcctacccccgcccg
cgggtttctcccaggggttgggcatttcgctggatttcgggggctggggg
cgggtgaggaatgctgggactcaaggacgaaggcagttaaccgggcccgg
gcagtgggagaatgggaagccagggtagaaggagaggaagggggaggtag
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126874422_126875181
seq2: B6Ng01-039F16.b_48_813 (reverse)

seq1  CTCTGGTTCCTCT-CCACAGTC-ATACGAAATTATACTTCTTGAGGAGAG  48
      ||||||||||||| |||||||| ||||||||||||||| |||||||||||
seq2  CTCTGGTTCCTCTCCCACAGTCAATACGAAATTATACTACTTGAGGAGAG  50

seq1  AAATTAG-AAATCTGTTTTATGA-GAGACCACTGGGTGGTGGTGGTGGAC  96
      |||| || ||||||||||||||| ||||||||||||||||||||||||||
seq2  AAATAAGAAAATCTGTTTTATGAGGAGACCACTGGGTGGTGGTGGTGGAC  100

seq1  ACACACG-CCTTTAAT-CCCAGCACTTGGGAGACAGAGGCAGGTGGATCT  144
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  ACACACGCCCTTTAATCCCCAGCACTTGGGAGACAGAGGCAGGTGGATCT  150

seq1  CAGAGTTCGAGGTCAGTCTGGTCTACAGAGGGAGTTGTAGGACAGCCAGG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCGAGGTCAGTCTGGTCTACAGAGGGAGTTGTAGGACAGCCAGG  200

seq1  GTTACACAGAGAAACCCTGTTTCAAGGAAGGAAAGAAGGCAGGCAGGCAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACAGAGAAACCCTGTTTCAAGGAAGGAAAGAAGGCAGGCAGGCAG  250

seq1  GCAGGCAGACAGGCTAGAAATCTTCATTTTGTAAAATCTTACTAACATTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGACAGGCTAGAAATCTTCATTTTGTAAAATCTTACTAACATTG  300

seq1  GAGATCCACCTGTTTACATTTTTACTGGAAAATAAACCAGCGTCTATCTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCACCTGTTTACATTTTTACTGGAAAATAAACCAGCGTCTATCTG  350

seq1  GAAACTCGGAAGAATGATAGCATATAAACTTATTTTACTTTATATATTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCGGAAGAATGATAGCATATAAACTTATTTTACTTTATATATTGT  400

seq1  TACTGATGAGTTCCAGTTCTTTTGCATTGAGGGTACAGTCTTGGTATGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATGAGTTCCAGTTCTTTTGCATTGAGGGTACAGTCTTGGTATGAT  450

seq1  TTATGTTTCCTTAATAATATTCATCATAAAATATGTATAACACAGATAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTCCTTAATAATATTCATCATAAAATATGTATAACACAGATAAA  500

seq1  AGTTCATTCTAGCTGTAAGTCTGAATTGGCATACTGTCTGACTTGGTATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTCTAGCTGTAAGTCTGAATTGGCATACTGTCTGACTTGGTATT  550

seq1  TACATATATACTAATTTTGTTTTACTCTAGGTGTTAGGAGAGTACTCCTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATACTAATTTTGTTTTACTCTAGGTGTTAGGAGAGTACTCCTA  600

seq1  CCTCTTAGATAAAGAAAGTCCAGAGGAGGTTATAACCAGGCTCTACAAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGATAAAGAAAGTCCAGAGGAGGTTATAACCAGGCTCTACAAGT  650

seq1  TACTTATGAGTGACTCCATTTCTTCAGAAACGAAAGCATGGTTGTTTGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATGAGTGACTCCATTTCTTCAGAAACGAAAGCATGGTTGTTTGCT  700

seq1  GCGGTAACCAAGTTGACACCTCAAGCTCATTCTTCTCCCTTAGTTGAGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTAACCAAGTTGACACCTCAAGCTCATTCTTCTCCCTTAGTTGAGAA  750

seq1  ATTAATCCAAGAATTC  760
      ||||||||||||||||
seq2  ATTAATCCAAGAATTC  766

seq1: chr2_126758305_126758557
seq2: B6Ng01-039F16.g_74_326

seq1  TTTGAATTAAGAAGAAAAGATGCCAGCACAGTGAAAAATTATAGAGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTAAGAAGAAAAGATGCCAGCACAGTGAAAAATTATAGAGAGGG  50

seq1  CTCCAGGACCAAGGAGGAGGAAGCTCCCCACCCACTCCTACCCCCGCCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGACCAAGGAGGAGGAAGCTCCCCACCCACTCCTACCCCCGCCCG  100

seq1  CGGGTTTCTCCCAGGGGTTGGGCATTTCGCTGGATTTCGGGGGCTGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTCTCCCAGGGGTTGGGCATTTCGCTGGATTTCGGGGGCTGGGGG  150

seq1  CGGGTGAGGAATGCTGGGACTCAAGGACGAAGGCAGTTAACCGGGCCCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGAGGAATGCTGGGACTCAAGGACGAAGGCAGTTAACCGGGCCCGG  200

seq1  GCAGTGGGAGAATGGGAAGCCAGGGTAGAAGGAGAGGAAGGGGGAGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGAGAATGGGAAGCCAGGGTAGAAGGAGAGGAAGGGGGAGGTAG  250

seq1  GGA  253
      |||
seq2  GGA  253