BAC Information

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BAC

Clone NameB6Ng01-039G17
Chromosome2 (Build37)
Map Location 128,520,663 - 128,626,430
singlet/doubletdoublet
Overlap geneMertk
Upstream geneMall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1
Downstream geneTmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039G17.bB6Ng01-039G17.g
ACCDH866695DH866696
length1,101434
definitionDH866695|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G17, 5' end.DH866696|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,625,307 - 128,626,430)(128,520,663 - 128,521,102)
sequence
gaattccagttgttatgcttgttcagcaaatgctcttacctactaagcca
tctcagcagccgctggtcaaaaaaaaaaattctgttgctaaaaatagaag
aagcatttggcaattttatcaacttttgcaaataaaatggatttaaagtc
cttttcttatataggcttggcaatcaaaccaatcatcttctctgtaaata
aagttttattagaacacagctatgcctatttgctgtctgtgcttttgcta
tattgtaacactgagtggttgctacaaagggccctcaaagccataggctc
atctatgtgaatgcttagtctgcagttggtgaaactgtttgagaaggact
aggaggtgtggccttgatagaggaggtttcaaaacccacacccttttcag
cctttctctctctgatttatgcttgtgcatggtcatatactcatctctga
aactgtaaacaagcccccgattaaatgctttctttcataagttgttttgg
tcatagtggctctgtacaacaatagaacagtaactaagatacttaccaaa
caagtttgctaacctttgtctaccattaaactgagttgttaccaagagcg
ctgagttatttggaccagtggactaagtaagggagacccagagctagagt
gggacatgaagggcgactgagtggtaagtactgtgtatcgctcccttccc
agcttcccaacagctccgtgtaaattatagtccatgccctggccttacct
ggagcatcaggatgaggtgagggttgggcaagcccaatacacaagcgctc
ctcacgagattctgctgagttctataggggtatgtgcctctcttctgagc
aactccatccccagtatttagtatcactaagactacaattaaggccatgg
gaagaatgacaacaggaaattgctgggctgagaagatcacaccagcattt
cattttgagccttcctgctttgggaaattgatattatatcattggatatg
aaactaagtgagggctgggagatggcccattgttagaacactgcctgtct
cccgaagtgctggttcactctagcccaatagagctcccactatttctgta
g
ctcatcccactcaacgacagcaggaatatgagtgtgggtggtatgattca
ccaaagaaacacctagatgcagttactgaaggactatagtgtggattcta
gatgggtgatagccagcatgatccaggcctcaactggcactagatcccat
gagataaaagctccctgctggaggagccgtgtattatgtcaggaacattt
cctaggcatttgttcatacctgacagtaaagataatggtccatttatgta
atgaacaaatggctctctagcactgaaagtagattaagatcctttcatgc
cacaaggtcatttgcagagtatcctggggtcaatctgatgtctagatttc
agccagtgctgataggcagcccaaactatgtcgcagtggataagggaggc
tagctgatggagatggagggtggaaggtggggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_128625307_128626430
seq2: B6Ng01-039G17.b_40_1140 (reverse)

seq1  CTACAGAAATAGTTGTGAGCTGCTATTTTGGGGCTAGGAGTTGAACTCAG  50
      |||||||||||| || ||||| |||||   |||||| ||| ||||| |||
seq2  CTACAGAAATAG-TGGGAGCT-CTATT---GGGCTA-GAG-TGAAC-CAG  42

seq1  CACCTCTGGGAGAACAGCCAGTGTTCTTAACCACTGAGCCATCTCTCCAG  100
      ||| || ||||| |||| |||||||||  | || || |||||||| ||||
seq2  CACTTC-GGGAG-ACAGGCAGTGTTCT--AACAATGGGCCATCTC-CCAG  87

seq1  CCCCTCACCTTAGTTTTCATATCCAGTGATATTAATATCAATTTCCCAAA  150
       |||||| ||||| ||||||||||| ||||| ||||||||||||||||||
seq2  -CCCTCA-CTTAG-TTTCATATCCAATGATA-TAATATCAATTTCCCAAA  133

seq1  GCAGGGAAGGCTCAAAATGAAATGCTGGTGTGAATCCTTCTCAGCCCAGC  200
      ||| |||||||||||||||||||||||||||||   ||||||||||||||
seq2  GCA-GGAAGGCTCAAAATGAAATGCTGGTGTGA--TCTTCTCAGCCCAGC  180

seq1  AATTTCCTGTTGTCATTTCCTTCCCATGGCCCTTAATTGTAGTCTTAGTG  250
      |||||||||||||||||  |||||||||| ||||||||||||||||||||
seq2  AATTTCCTGTTGTCATT--CTTCCCATGG-CCTTAATTGTAGTCTTAGTG  227

seq1  ATACTAAATACTGGGGATGGAGTTGCTCAGAAGAGAGGCACATACCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAATACTGGGGATGGAGTTGCTCAGAAGAGAGGCACATACCCCTA  277

seq1  TAGAACTCAGCAGAATCTCCTGAGGAGCGCTTGTGTATTGGGCTTGCCCA  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGAACTCAGCAGAATCTCGTGAGGAGCGCTTGTGTATTGGGCTTGCCCA  327

seq1  ACCCTCACCTCATCCTGATGCTCCAGGTAAGGCCAGGGCATGGACTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCACCTCATCCTGATGCTCCAGGTAAGGCCAGGGCATGGACTATAA  377

seq1  TTTACACGGAGCTGTTGGGAAGCTGGGAAGGGAGCGATACACAGTACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACGGAGCTGTTGGGAAGCTGGGAAGGGAGCGATACACAGTACTTA  427

seq1  CCACTCAGTCGCCCTTCATGTCCCACTCTAGCTCTGGGTCTCCCTTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGTCGCCCTTCATGTCCCACTCTAGCTCTGGGTCTCCCTTACTT  477

seq1  AGTCCACTGGTCCAAATAACTCAGCGCTCTTGGTAACAACTCAGTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTGGTCCAAATAACTCAGCGCTCTTGGTAACAACTCAGTTTAAT  527

seq1  GGTAGACAAAGGTTAGCAAACTTGTTTGGTAAGTATCTTAGTTACTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACAAAGGTTAGCAAACTTGTTTGGTAAGTATCTTAGTTACTGTTC  577

seq1  TATTGTTGTACAGAGCCACTATGACCAAAACAACTTATGAAAGAAAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTACAGAGCCACTATGACCAAAACAACTTATGAAAGAAAGCAT  627

seq1  TTAATCGGGGGCTTGTTTACAGTTTCAGAGATGAGTATATGACCATGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCGGGGGCTTGTTTACAGTTTCAGAGATGAGTATATGACCATGCAC  677

seq1  AAGCATAAATCAGAGAGAGAAAGGCTGAAAAGGGTGTGGGTTTTGAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAATCAGAGAGAGAAAGGCTGAAAAGGGTGTGGGTTTTGAAACC  727

seq1  TCCTCTATCAAGGCCACACCTCCTAGTCCTTCTCAAACAGTTTCACCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATCAAGGCCACACCTCCTAGTCCTTCTCAAACAGTTTCACCAAC  777

seq1  TGCAGACTAAGCATTCACATAGATGAGCCTATGGCTTTGAGGGCCCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTAAGCATTCACATAGATGAGCCTATGGCTTTGAGGGCCCTTTG  827

seq1  TAGCAACCACTCAGTGTTACAATATAGCAAAAGCACAGACAGCAAATAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACCACTCAGTGTTACAATATAGCAAAAGCACAGACAGCAAATAGG  877

seq1  CATAGCTGTGTTCTAATAAAACTTTATTTACAGAGAAGATGATTGGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTGTGTTCTAATAAAACTTTATTTACAGAGAAGATGATTGGTTTG  927

seq1  ATTGCCAAGCCTATATAAGAAAAGGACTTTAAATCCATTTTATTTGCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAAGCCTATATAAGAAAAGGACTTTAAATCCATTTTATTTGCAAA  977

seq1  AGTTGATAAAATTGCCAAATGCTTCTTCTATTTTTAGCAACAGAATTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATAAAATTGCCAAATGCTTCTTCTATTTTTAGCAACAGAATTTTT  1027

seq1  TTTTTTGACCAGCGGCTGCTGAGATGGCTTAGTAGGTAAGAGCATTTGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGACCAGCGGCTGCTGAGATGGCTTAGTAGGTAAGAGCATTTGCT  1077

seq1  GAACAAGCATAACAACTGGAATTC  1124
      ||||||||||||||||||||||||
seq2  GAACAAGCATAACAACTGGAATTC  1101

seq1: chr2_128520663_128521102
seq2: B6Ng01-039G17.g_65_504

seq1  GAATTCCTCATCCCACTCAACGACAGCAGGAATATGAGTGTGGGTGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATCCCACTCAACGACAGCAGGAATATGAGTGTGGGTGGTAT  50

seq1  GATTCACCAAAGAAACACCTAGATGCAGTTACTGAAGGACTATAGTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACCAAAGAAACACCTAGATGCAGTTACTGAAGGACTATAGTGTGG  100

seq1  ATTCTAGATGGGTGATAGCCAGCATGATCCAGGCCTCAACTGGCACTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATGGGTGATAGCCAGCATGATCCAGGCCTCAACTGGCACTAGA  150

seq1  TCCCATGAGATAAAAGCTCCCTGCTGGAGGAGCCGTGTATTATGTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGAGATAAAAGCTCCCTGCTGGAGGAGCCGTGTATTATGTCAGGA  200

seq1  ACATTTCCTAGGCATTTGTTCATACCTGACAGTAAAGATAATGGTCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCTAGGCATTTGTTCATACCTGACAGTAAAGATAATGGTCCATT  250

seq1  TATGTAATGAACAAATGGCTCTCTAGCACTGAAAGTAGATTAAGATCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATGAACAAATGGCTCTCTAGCACTGAAAGTAGATTAAGATCCTT  300

seq1  TCATGCCACAAGGTCATTTGCAGAGTATCCTGGGGTCAATCTGATGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCACAAGGTCATTTGCAGAGTATCCTGGGGTCAATCTGATGTCTA  350

seq1  GATTTCAGCCAGTGCTGATAGGCAGCCCAAACTATGTCGCAGTGGATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGCCAGTGCTGATAGGCAGCCCAAACTATGTCGCAGTGGATAAG  400

seq1  GGAGGCTAGCTGATGGAGATGGAGGGTGGAAGGTGGGGTT  440
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTAGCTGATGGAGATGGAGGGTGGAAGGTGGGGTT  440