BAC Information

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BAC

Clone NameB6Ng01-039G18
Chromosome6 (Build37)2 (Build37)
Map Location 68,159,675 - 68,160,982142,776,236 - 142,776,809
singlet/doubletsingletsinglet
Overlap geneIgk, LOC232047
Upstream geneEG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113
Downstream geneEG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039G18.bB6Ng01-039G18.g
ACCDH866697DH866698
length1,274980
definitionDH866697|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G18, 5' end.DH866698|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,159,675 - 68,160,982)(142,776,236 - 142,776,809)
sequence
gaattctgtagcacacctcataggtaaggaatttttttaaattaaatatt
cagaataaacttttcttgattcaaaaaagagtaacttggaaatatgttgt
catagtgttcacattcagaaatataacaatatttcagcaatagagaaaaa
aatgcatgttgttttaattatatccattaatatgaatatatttcatgtac
tgacaccatacatgtaggttttgattaagcattaaaattatgctcacaaa
tatatagtctatcaaaattgcaatgtatttcacagctggcagcaacatct
aggaaaaatattgtagatgatatatcaaatgttttgcatttggatactac
cctgaataatactgaaaaatataattaagttgttaacgatttgttttctt
atgtatatgggtgctttacctgcatgtgccaaacatgtgtgactctaata
cccacagaactcagaagttgttgggtctcctggaactgtagatgtttcaa
tccatcatataagttttatattgagccaacttgtgctgcaagaacaagaa
atgctcttcactcctggcgcatctttccaaacagcccatgaaaattataa
ttttagctagattatgcacttttgtaaagatcacatttaaatttttcccc
tttcctttatccatctttacaactaactcactccaactacatagtaactt
tcacgtatacagaggatgaatttcacagaagtatgacacagaaaatcaca
cacacacacacacacacacacacacagagagagagagagagagagagaga
gagagagagagagagagagaaattaaatgacatgtatttattctctacaa
aaaaaaaaaaagaagagagttcattagagttcattattgcctggtccctg
gtcaggaaatcagctggtggatttaagagccacctggataaacaaagact
agcatagcagatggccttcctggaggtgtcccacctcttttgtatgtcct
gccaaggttgagctctatgagcaaggttcaaaacagaattcatcccagta
atgcttttttttttcagaaggtttcttgcagatggaattgccttggctgt
cattatgaattaattagtaatccctgggcatagacccaccctatcattag
attctcacaattaccaaatggatttctggagaatatgattctatagaatt
ctgatttgataaaaattagaagaaagcttcaaggggcttatgcttgtctg
aaagaagaatgaattagactaaaa
gaattccttgaaccacttagacttgagctttgtaaaggagataaagatgg
atcgatttgctttcttctatatgctaatcgccaattgacccagaaccatt
tgttgaagaggctgtctttttttcctctggatggttttagctccttcgtc
aaagatcaagtgaccataggtgtgtgggttaatttctgggtcttcaattc
tattccattgatctgcctgtctgtcgctgtaccagtaccatgcagttttt
atcacaattgctctgtagtacagcttgagttcaggcatggtgattccacc
agaggttcttttattgttgagaacagtttttgctatcctgggatttttgt
tattccagatgaatttccaaattgctctttctaactctattaagaattga
gtcggaattttgatggggattcattgaatctgtagattgcttttggcagg
atagccatttttactatattaattctgccaatccatgcgcattggagatt
ttcttcaattcctttcttcagagacttgaagatcttatcatacagatctt
tcacttccttagttagaatcataccaaggtactttatattatttgtgatt
attttgaggggtgttgtttccctaatttctttctcagcctgtttatcctt
tttttcttattttttgtttttgtttttgtcttttgtttttggttttttgt
ttttgattttttgtttttggggattggtttttcgagacagggtttctctg
tgtagccctggctgtcctggaactcactctgtagaccaggctgccctcaa
actcagaaatctctctgtctatgccttccaagtgctgggattaaaggcgt
gcgccaccacctcccagctatttatgtatttgtttgttggttatttatta
tttgtctgtttatcctttgggagaagaaggccactgatttgtttcagtta
attttatatccagctccttcactgagttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_68159675_68160982
seq2: B6Ng01-039G18.b_43_1316 (reverse)

seq1  TTTTAGTCTAATTTCATTACATCTTTCTAGCAAAGCAACTAAAGCCACCT  50
      ||||||||||| |||||| | |||||| ||  |||||  |||     || 
seq2  TTTTAGTCTAA-TTCATT-CTTCTTTC-AGACAAGCA--TAA----GCCC  41

seq1  CTTAAAGCTTTCTTCCTAAAATTATTTTAATCAAATCAGGAATTCTATAG  100
      ||| |||||||||||      | ||||| ||||||||| |||||||||||
seq2  CTTGAAGCTTTCTTC------TAATTTTTATCAAATCA-GAATTCTATAG  84

seq1  AATCATTAATTCATCATGAAAATTCATTTTTTTGTTAATCTGTAGGAAAT  150
      ||||||  ||||  ||   |||| ||    |||| |||| ||| |  |||
seq2  AATCAT--ATTCTCCA--GAAATCCA----TTTGGTAAT-TGT-GAGAAT  124

seq1  CTAATTGATAGGGTTGGCTAATGCCCAGGGATTACTATATTAATTTAATA  200
      |||| ||||||||| ||   ||||||||||||||||| ||||| || |||
seq2  CTAA-TGATAGGGTGGGTCTATGCCCAGGGATTACTA-ATTAA-TTCATA  171

seq1  ATGACAGGCAAGGC-ATATCATCTGCAAGAAACATTCCTGAAAAAAAAAA  249
      ||||||| |||||| ||  |||||||||||||| || |||  ||||||||
seq2  ATGACAGCCAAGGCAATTCCATCTGCAAGAAACCTT-CTG--AAAAAAAA  218

seq1  AAGCATTACTGGGATGAATTCTGTTTTGAACCTTGCCTCATAGAGCTCAA  299
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGCATTACTGGGATGAATTCTGTTTTGAACCTTG-CTCATAGAGCTCAA  267

seq1  CCTTGGCAGGACATACAAAAGAGGTGGGACACCTCCAGGAAGGCCATCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCAGGACATACAAAAGAGGTGGGACACCTCCAGGAAGGCCATCTG  317

seq1  CTATGCTAGTCTTTGTTTATCCCAGGTGGCTCTTAACATCCACCAGCTGA  399
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  CTATGCTAGTCTTTGTTTAT-CCAGGTGGCTCTTAA-ATCCACCAGCTGA  365

seq1  TTTCCTGACCAGGGACCAGGCAATAATGAACTCTAATGAACTCTCTTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGACCAGGGACCAGGCAATAATGAACTCTAATGAACTCTCTTCTT  415

seq1  TTTTTTTTTTTGTAGAGAATAAATACATGTCATTTAATTTCTCTCTCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGTAGAGAATAAATACATGTCATTTAATTTCTCTCTCTCT  465

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGT  515

seq1  GTGTGTGTGTGTGATTTTCTGTGTCATACTTCTGTGAAATTCATCCTCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGATTTTCTGTGTCATACTTCTGTGAAATTCATCCTCTG  565

seq1  TATACGTGAAAGTTACTATGTAGTTGGAGTGAGTTAGTTGTAAAGATGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTGAAAGTTACTATGTAGTTGGAGTGAGTTAGTTGTAAAGATGGA  615

seq1  TAAAGGAAAGGGGAAAAATTTAAATGTGATCTTTACAAAAGTGCATAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAAGGGGAAAAATTTAAATGTGATCTTTACAAAAGTGCATAATC  665

seq1  TAGCTAAAATTATAATTTTCATGGGCTGTTTGGAAAGATGCGCCAGGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAAATTATAATTTTCATGGGCTGTTTGGAAAGATGCGCCAGGAGT  715

seq1  GAAGAGCATTTCTTGTTCTTGCAGCACAAGTTGGCTCAATATAAAACTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCATTTCTTGTTCTTGCAGCACAAGTTGGCTCAATATAAAACTTA  765

seq1  TATGATGGATTGAAACATCTACAGTTCCAGGAGACCCAACAACTTCTGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGATTGAAACATCTACAGTTCCAGGAGACCCAACAACTTCTGAG  815

seq1  TTCTGTGGGTATTAGAGTCACACATGTTTGGCACATGCAGGTAAAGCACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGGTATTAGAGTCACACATGTTTGGCACATGCAGGTAAAGCACC  865

seq1  CATATACATAAGAAAACAAATCGTTAACAACTTAATTATATTTTTCAGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATAAGAAAACAAATCGTTAACAACTTAATTATATTTTTCAGTA  915

seq1  TTATTCAGGGTAGTATCCAAATGCAAAACATTTGATATATCATCTACAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGGGTAGTATCCAAATGCAAAACATTTGATATATCATCTACAAT  965

seq1  ATTTTTCCTAGATGTTGCTGCCAGCTGTGAAATACATTGCAATTTTGATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTAGATGTTGCTGCCAGCTGTGAAATACATTGCAATTTTGATA  1015

seq1  GACTATATATTTGTGAGCATAATTTTAATGCTTAATCAAAACCTACATGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATATATTTGTGAGCATAATTTTAATGCTTAATCAAAACCTACATGT  1065

seq1  ATGGTGTCAGTACATGAAATATATTCATATTAATGGATATAATTAAAACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTCAGTACATGAAATATATTCATATTAATGGATATAATTAAAACA  1115

seq1  ACATGCATTTTTTTCTCTATTGCTGAAATATTGTTATATTTCTGAATGTG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATTTTTTTCTCTATTGCTGAAATATTGTTATATTTCTGAATGTG  1165

seq1  AACACTATGACAACATATTTCCAAGTTACTCTTTTTTGAATCAAGAAAAG  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATGACAACATATTTCCAAGTTACTCTTTTTTGAATCAAGAAAAG  1215

seq1  TTTATTCTGAATATTTAATTTAAAAAAATTCCTTACCTATGAGGTGTGCT  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTGAATATTTAATTTAAAAAAATTCCTTACCTATGAGGTGTGCT  1265

seq1  ACAGAATTC  1308
      |||||||||
seq2  ACAGAATTC  1274

seq1: chr2_142776236_142776809
seq2: B6Ng01-039G18.g_158_713 (reverse)

seq1  TAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCA  50
      ||||||||||||||||||||||||||||||||||||| ||  |||| |||
seq2  TAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCCTCAAAATAATCA  50

seq1  CAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGAT  100
      ||||||||||||| || || ||  ||| ||||||||||||||||||||||
seq2  CAAATAATATAAAGTACCTTGGTATGATTCTAACTAAGGAAGTGAAAGAT  100

seq1  CTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCT  150
      ||||||||||| | |||||||||||||||||||| |||| |||||     
seq2  CTGTATGATAAGATCTTCAAGTCTCTGAAGAAAGGAATTGAAGAA-----  145

seq1  CAGAAGATGGAAGGATCTCCCATGCTCATGGATTGGCAGGATCAACATTG  200
                    |||||| |||| ||||||||||||| || || || |
seq2  -------------AATCTCCAATGCGCATGGATTGGCAGAATTAATATAG  182

seq1  TAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCC  250
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  TAAAAATGGCTATCCTGCCAAAAGCAATCTACAGATTCAATG-AATCCCC  231

seq1  ATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAA  300
      ||||||||||| ||||||||||| |  || |||||| |||||||||| ||
seq2  ATCAAAATTCCGACTCAATTCTTAATAGAGTTAGAAAGAGCAATTTGGAA  281

seq1  ATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGG  350
      ||||||||||||||||||||| || ||||||||||||| | |||||||  
seq2  ATTCATCTGGAATAACAAAAATCCCAGGATAGCAAAAACTGTTCTCAACA  331

seq1  ATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTAC  400
      |||||||||||||||||||||||||||||||||| || ||||| ||||||
seq2  ATAAAAGAACCTCTGGTGGAATCACCATGCCTGAACTCAAGCTGTACTAC  381

seq1  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGT  450
      ||||||||||||||||||||||||||||||||||| || |||||||| | 
seq2  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTACAGCGACAGACAGGC  431

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  500
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGATCAATGGAATAGAATTGAAGACCCAGAAATTAACCCACACACCTATG  481

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGG-AAGAAAGA  549
      ||||||||||||| ||| | ||||||||||||||||||||| || |||||
seq2  GTCACTTGATCTTTGACGAAGGAGCTAAAACCATCCAGAGGAAAAAAAGA  531

seq1  CAGCATTTTCAACAATTGGTGCTGG  574
      |||| | |||||||| |||| ||||
seq2  CAGCCTCTTCAACAAATGGTTCTGG  556