BAC Information

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BAC

Clone NameB6Ng01-039I07
Chromosome2 (Build37)
Map Location 50,131,036 - 50,262,729
singlet/doubletdoublet
Overlap gene2010311D03Rik
Upstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik, Lypd6
Downstream geneLOC666781, LOC227885, Rnd3, LOC666802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039I07.bB6Ng01-039I07.g
ACCDH866770DH866771
length8271,228
definitionDH866770|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I07, 5' end.DH866771|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,131,036 - 50,131,862)(50,261,488 - 50,262,729)
sequence
gaattctttcatgccttttcttcccttttgttgctggcgatcataaacat
ttctgcattgtttaaacatggtgtttctgtgagttggccatgctgacaca
tccactccagtgttgatgggcattcggcggtttcttacttcagcagctat
acgactgctgtagacttacataatcaaagcatcagcatagagctgttaga
gtccatgcacttagttctgctgggggcatgccttgcgccagagtgtaact
ctgtcagtatttggaataatttttcatcttagccattctggagtgcatgt
agtaaaacagtactgtagatttaattgtatttctgatgatttatggacca
gaacacatatttattggccatttggctatttttctttgtaaattttttac
ttattttttattaccaattttagggcttcttaattatgaacatgagtcct
ttgttttctatgtacattgcttaatttgtgtgtgtatatgtgtgtgtaat
ctccgactcttggttggtttttgatcaaagcctaattttaatacaaattt
atcaaatttcccttgcatcattatattgtttcatagttgttttttttttt
ttttttttttttgcttatttttaagttcacaaaagtaattttttttttag
ctgaaagctgtggggcagtgggctgaacacagacagcctggtctccagtc
gagcctaggtcttgaggtcttgaatcctggaaaacccaatgggacagaag
gtattcgatcatgtctcctggacccctggctcctgttgaagtccccacag
cccccacagagccccctcccccagcat
gaattcaatagcccatagcttttatcatgcaaaccttgttccttgactta
aaactattggttaaaaaaaaatggatacagccagttactagaggaattac
agataggtagattttaagttacctagttgagggtgaaaaagagagagaga
gaaagaaagaaagaagagagagcaggaggagaaagaggaagaatgagaga
gaggaggaagccaccatgagggaagatggaccaaggtggccaggagaaat
agaaagtgtctgacatacacaactcaggaggtcaccaagccagtagttaa
gagtagactaggggtgacaccccccccagtaattgtcaaagccaaataaa
ataaccacagtctgagtctcatctatttgtaagctagttggggataagtt
taaattggttctactacacctattgaactattgaaatgccatgtatgctt
tttacaattgtgatttagaccaagatcactcttgcggcctgcctcccatt
cctaaataaacagtatattcagacttatctagacacctcctcgctttcct
catttttgagatgtccccagataaaggtaaaacttgaagaccctggatta
agtttgtagcctggccttcccattccatagcaggcctagagagaagaggc
cctgaactcacagattgtaaagggccacaagatacttacagacctcctac
ctcttcacctctcaccgaatctagattttcttttctttcataaagagctg
aaacataaaagaaacaagtaagagaattaccgggccgcccttcaagcctc
cagcctagactcaaatggtttgagaaacccatggcaaaagtcaaacacag
catcactgataagggaggtttaaccatttcagcctcaagagagctgaatg
tgtgtgctcacactctcacacaatatattaaacatgcctatctgttgcaa
agaagactttggggcaggcaaacagtctgtcaatcctaattacctcgctg
gaaccatgctgtcctccaggccctttgctgtctggcatccgaggcctgca
ttagccagatcctaaccagctgaagaagaatgagaggcatcttgcacttg
agcctggtgaacgcatcggggtctcttcaggctgtggacgagcattgcct
ttcatgagcgtgtcagtttgagtgcccggctgtggccaaggcctggtgtc
agacaagggcttaaaatatacagggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50131036_50131862
seq2: B6Ng01-039I07.b_46_872

seq1  GAATTCTTTCATGCCTTTTCTTCCCTTTTGTTGCTGGCGATCATAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATGCCTTTTCTTCCCTTTTGTTGCTGGCGATCATAAACAT  50

seq1  TTCTGCATTGTTTAAACATGGTGTTTCTGTGAGTTGGCCATGCTGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATTGTTTAAACATGGTGTTTCTGTGAGTTGGCCATGCTGACACA  100

seq1  TCCACTCCAGTGTTGATGGGCATTCGGCGGTTTCTTACTTCAGCAGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCAGTGTTGATGGGCATTCGGCGGTTTCTTACTTCAGCAGCTAT  150

seq1  ACGACTGCTGTAGACTTACATAATCAAAGCATCAGCATAGAGCTGTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTGCTGTAGACTTACATAATCAAAGCATCAGCATAGAGCTGTTAGA  200

seq1  GTCCATGCACTTAGTTCTGCTGGGGGCATGCCTTGCGCCAGAGTGTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGCACTTAGTTCTGCTGGGGGCATGCCTTGCGCCAGAGTGTAACT  250

seq1  CTGTCAGTATTTGGAATAATTTTTCATCTTAGCCATTCTGGAGTGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGTATTTGGAATAATTTTTCATCTTAGCCATTCTGGAGTGCATGT  300

seq1  AGTAAAACAGTACTGTAGATTTAATTGTATTTCTGATGATTTATGGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACAGTACTGTAGATTTAATTGTATTTCTGATGATTTATGGACCA  350

seq1  GAACACATATTTATTGGCCATTTGGCTATTTTTCTTTGTAAATTTTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATATTTATTGGCCATTTGGCTATTTTTCTTTGTAAATTTTTTAC  400

seq1  TTATTTTTTATTACCAATTTTAGGGCTTCTTAATTATGAACATGAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTATTACCAATTTTAGGGCTTCTTAATTATGAACATGAGTCCT  450

seq1  TTGTTTTCTATGTACATTGCTTAATTTGTGTGTGTATATGTGTGTGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTATGTACATTGCTTAATTTGTGTGTGTATATGTGTGTGTAAT  500

seq1  CTCCGACTCTTGGTTGGTTTTTGATCAAAGCCTAATTTTAATACAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGACTCTTGGTTGGTTTTTGATCAAAGCCTAATTTTAATACAAATTT  550

seq1  ATCAAATTTCCCTTGCATCATTATATTGTTTCATAGTTGTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTTCCCTTGCATCATTATATTGTTTCATAGTTGTTTTTTTTTTT  600

seq1  TTTTTTTTTTTTGCTTATTTTTAAGTTCACAAAAGTAATTTTTTTTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGCTTATTTTTAAGTTCACAAAAGTAATTTTTTTTTTAG  650

seq1  CTGAAAGCTGTGGGGCAGTGGGCTGAACACAGACAGCCTGGTCTCCAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCTGTGGGGCAGTGGGCTGAACACAGACAGCCTGGTCTCCAGTC  700

seq1  GAGCCTAGGTCTTGAGGTCTTGAATCCTGGAAAACCCAATGGGACAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAGGTCTTGAGGTCTTGAATCCTGGAAAACCCAATGGGACAGAAG  750

seq1  GTATTCGATCATGTCTCCTGGACCCCTGGCTCCTGTTGAAGTCCCCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCGATCATGTCTCCTGGACCCCTGGCTCCTGTTGAAGTCCCCACAG  800

seq1  CCCCCACAGAGCCCCCTCCCCCAGCAT  827
      |||||||||||||||||||||||||||
seq2  CCCCCACAGAGCCCCCTCCCCCAGCAT  827

seq1: chr2_50261488_50262729
seq2: B6Ng01-039I07.g_66_1293 (reverse)

seq1  CAGCCCTGTATGATATTTTAAAGGCCTTTGTCTGTGCACACAGCTGCTTT  50
      |||||||||   |||||||||  ||| |||||||   ||||     ||| 
seq2  CAGCCCTGT---ATATTTTAA--GCCCTTGTCTG---ACACCAGGCCTTG  42

seq1  GACA-AGCCGGGCA-TCAAACTGACA-GCTCATTGGAAAGGCATGCCTCG  97
      | || ||||||||| ||||||||||| ||||||  ||||||||   ||||
seq2  GCCACAGCCGGGCACTCAAACTGACACGCTCAT--GAAAGGCAATGCTCG  90

seq1  TCACAAGCCTGAAGAGACACAGAATGACAGTTCA-CAGGCTCAAGTGCAA  146
      ||   ||||||||||||| | | |||   ||||| |||||||||||||||
seq2  TCCACAGCCTGAAGAGACCCCG-ATG--CGTTCACCAGGCTCAAGTGCAA  137

seq1  GATGGCCTCTCAATCTTCTTCAGCTGGTTAGGATCTTGGCTAATGCAGGG  196
      ||| |||||||| |||||||||||||||||||||| ||||||||||| ||
seq2  GAT-GCCTCTCATTCTTCTTCAGCTGGTTAGGATC-TGGCTAATGCA-GG  184

seq1  CCTCGGATGCCAGACAGCAAAGGGCCTGGAGGAACAAGCATGGTTCCAGC  246
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  CCTCGGATGCCAGACAGCAAAGGGCCTGGAGGA--CAGCATGGTTCCAGC  232

seq1  GAGGTAATTAGGATTGACAGACTGTTTGCCTGCCCCAAAGTCTTCTTTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATTAGGATTGACAGACTGTTTGCCTGCCCCAAAGTCTTCTTTGC  282

seq1  AACAGATAGGCATGTTTAATATATTGTGTGAGAGTGTGAGCACACACATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATAGGCATGTTTAATATATTGTGTGAGAGTGTGAGCACACACATT  332

seq1  CAGCTCTCTTGAGGCTGAAATGGTTAAACCTCCCTTATCAGTGATGCTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCTTGAGGCTGAAATGGTTAAACCTCCCTTATCAGTGATGCTGT  382

seq1  GTTTGACTTTTGCCATGGGTTTCTCAAACCATTTGAGTCTAGGCTGGAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACTTTTGCCATGGGTTTCTCAAACCATTTGAGTCTAGGCTGGAGG  432

seq1  CTTGAAGGGCGGCCCGGTAATTCTCTTACTTGTTTCTTTTATGTTTCAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGGCGGCCCGGTAATTCTCTTACTTGTTTCTTTTATGTTTCAGC  482

seq1  TCTTTATGAAAGAAAAGAAAATCTAGATTCGGTGAGAGGTGAAGAGGTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGAAAGAAAAGAAAATCTAGATTCGGTGAGAGGTGAAGAGGTAG  532

seq1  GAGGTCTGTAAGTATCTTGTGGCCCTTTACAATCTGTGAGTTCAGGGCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGTAAGTATCTTGTGGCCCTTTACAATCTGTGAGTTCAGGGCCT  582

seq1  CTTCTCTCTAGGCCTGCTATGGAATGGGAAGGCCAGGCTACAAACTTAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTAGGCCTGCTATGGAATGGGAAGGCCAGGCTACAAACTTAAT  632

seq1  CCAGGGTCTTCAAGTTTTACCTTTATCTGGGGACATCTCAAAAATGAGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCTTCAAGTTTTACCTTTATCTGGGGACATCTCAAAAATGAGGA  682

seq1  AAGCGAGGAGGTGTCTAGATAAGTCTGAATATACTGTTTATTTAGGAATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAGGAGGTGTCTAGATAAGTCTGAATATACTGTTTATTTAGGAATG  732

seq1  GGAGGCAGGCCGCAAGAGTGATCTTGGTCTAAATCACAATTGTAAAAAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGCCGCAAGAGTGATCTTGGTCTAAATCACAATTGTAAAAAGC  782

seq1  ATACATGGCATTTCAATAGTTCAATAGGTGTAGTAGAACCAATTTAAACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGGCATTTCAATAGTTCAATAGGTGTAGTAGAACCAATTTAAACT  832

seq1  TATCCCCAACTAGCTTACAAATAGATGAGACTCAGACTGTGGTTATTTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCAACTAGCTTACAAATAGATGAGACTCAGACTGTGGTTATTTTA  882

seq1  TTTGGCTTTGACAATTACTGGGGGGGGTGTCACCCCTAGTCTACTCTTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTTGACAATTACTGGGGGGGGTGTCACCCCTAGTCTACTCTTAA  932

seq1  CTACTGGCTTGGTGACCTCCTGAGTTGTGTATGTCAGACACTTTCTATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGCTTGGTGACCTCCTGAGTTGTGTATGTCAGACACTTTCTATTT  982

seq1  CTCCTGGCCACCTTGGTCCATCTTCCCTCATGGTGGCTTCCTCCTCTCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCCACCTTGGTCCATCTTCCCTCATGGTGGCTTCCTCCTCTCTC  1032

seq1  TCATTCTTCCTCTTTCTCCTCCTGCTCTCTCTTCTTTCTTTCTTTCTCTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCCTCTTTCTCCTCCTGCTCTCTCTTCTTTCTTTCTTTCTCTC  1082

seq1  TCTCTCTTTTTCACCCTCAACTAGGTAACTTAAAATCTACCTATCTGTAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTTTCACCCTCAACTAGGTAACTTAAAATCTACCTATCTGTAA  1132

seq1  TTCCTCTAGTAACTGGCTGTATCCATTTTTTTTTAACCAATAGTTTTAAG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTAGTAACTGGCTGTATCCATTTTTTTTTAACCAATAGTTTTAAG  1182

seq1  TCAAGGAACAAGGTTTGCATGATAAAAGCTATGGGCTATTGAATTC  1242
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAACAAGGTTTGCATGATAAAAGCTATGGGCTATTGAATTC  1228