BAC Information

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BAC

Clone NameB6Ng01-039J24
Chromosome2 (Build37)
Map Location 142,776,691 - 142,777,698
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039J24.bB6Ng01-039J24.g
ACCDH866844DH866845
length9431,167
definitionDH866844|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J24, 5' end.DH866845|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagccccatttgttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaatatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctgattttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttcaactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttagtctggcatggtgattccgccagaagttctttt
atccttgagaagactttttgctatcctaggttttttgttattccagacaa
atttgcaaattgctccttccaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgcgattccatgagcatgggagatctttccatcttc
tgagatcttccttaatttctttcttcagagatttgaagtttatcatacag
atctttcacttccttagttagagtcatgccagatattttatat
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaattgtggcttcataaaatgagtta
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctggtagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctaggg
cttttagctgtgttgtcaagctgctagtatgtgctgtctcctgtttcttc
tggagcactcagcgatatgagtttcctctagaaatgcttccatgtgtccc
atagttgggtcgttggggctcctttctataactctaaaaagctttaattt
cttctttattccttccttgaccaagtatcatgaagaagagtgtattcaga
tccacgtgaaggtggcttccatatattatgatgtattgaaagacgactct
agccggtgggtgctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776691_142777698
seq2: B6Ng01-039J24.b_47_594 (reverse)

seq1  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATGGAATAGAATTGAAGATCCAGAAATGAACCCACACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCAT  100
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTTGAAGAAAGACAGCAT  100

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGG  150
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGC  150

seq1  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGGAACTTCACATAAAATCAGAGACACTGAAACTTATAGAGGAGAAAGT  250

seq1  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAA  300

seq1  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  350

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCATCAATAAGACAAAAAG  400

seq1  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACCACCAACAGATTGGGAAAGGATATTTACCTATCCTAAATCAGATAGGG  450

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGA  550
      ||||||||||||||||| |||||||||||| ||            ||| |
seq2  TCAAATAACCCCATTAACAAATGGGGCTCAGAA----------CTGAACA  540

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  600
      ||||    |||                                       
seq2  AAGA----ATTC--------------------------------------  548

seq1  AGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  650
                                                        
seq2  --------------------------------------------------  548

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  700
                                                        
seq2  --------------------------------------------------  548

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTC  750
                                                        
seq2  --------------------------------------------------  548

seq1  CTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  800
                                                        
seq2  --------------------------------------------------  548

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATA  850
                                                        
seq2  --------------------------------------------------  548

seq1  AGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAA  900
                                                        
seq2  --------------------------------------------------  548

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  950
                                                        
seq2  --------------------------------------------------  548

seq1  CCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACA  1000
                                                        
seq2  --------------------------------------------------  548

seq1  AAGAATTC  1008
              
seq2  --------  548