BAC Information

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BAC

Clone NameB6Ng01-039L22
Chromosome2 (Build37)
Map Location 6,537,841 - 6,664,370
singlet/doubletdoublet
Overlap geneCugbp2
Upstream geneCamk1d, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387
Downstream geneLOC100040659, LOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039L22.bB6Ng01-039L22.g
ACCDH866925DH866926
length1,1681,197
definitionDH866925|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L22, 5' end.DH866926|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,663,187 - 6,664,370)(6,537,841 - 6,539,048)
sequence
gaattcaaagaactatttattagacttgattcctgtcctcaagacattta
gagtatattttagaagaaaaacaaaagcataatgtatagtatataacgtt
ttaagaccttccagtgaatttttatgtgcaatgcctcttttgatcttaaa
atactgtgatctctcagagaataactgacgttttctaaatgaaaacttgg
acacaattcatcaatataattccaaaccagctgcttgaagtcataggtat
atgattttgctactacactgttaaacaataagattatggggtggtgtata
tgataaaaatatgtgacactgtatataactcctcagacacttgaacagag
aagagctatgtggtaaatttggaaaattggtaggtctgtcttgagtgata
atttcttaatggagtaggatgccagctccagggtactactgtaaaggaag
aaatgtatggaagcggacagcaatgtgtgagacttagtatattgtggttc
ttgtaggagagcttgaaaagatttggactcatctgtgaaatctatttaaa
agtaaagaacattagtgtcagtatttaaagtgtatggacttttctaaata
gtatgcaagaaatagaattagaaaaaaagaactcgagccgggcgtggtgg
cgcacgcctttaatcccagcactcaggaggcagaggctggcggatctctg
agttcgaggccagcctggtctacaaagtgagttccaggacagccagggct
acacagagaaaccctgtctcaaaaacaaaaacaagcaaacaaaaacaaaa
acaaaaaaagaaaaaagaactctgaaatatcacttgcaatgaatggcagg
ataggatgtaaggccaggtagggagatgttctgattgctccatggtttcc
cttcctccagtggcaaacatatgcagttgttcagtttcttcctcacatct
tttatgaaccttgagttaccaccttgtcttcccacccctgtactgttcat
ggcatctttatatagtctgttatatgaaatgctttgttgttctttaatcg
catgcttagaaggttgggaatcctggagccttgaatgttgacttggaaaa
acaaacaaaatattacaggtcattcatggagattcatgctattgtcaagt
agagggagagctgaacag

gaattccatgtaataagaagaggacttattccatctgtctataaaacaga
ttctgagtccttaagagggaaagcaactttcctagggtcatttaggaagt
atgtgatctaatatggacacatcctacgttcctacccccacccagggttc
ttgttccttcactgattctcccaagctggaggaggtagatgagccttaca
ggcagaaggaatgattatgactaaaggagtcttgctctctgtttagtatt
gtcattgatttgtaatgtagtcctgctaatcatctcacctttgtcagcta
agcttcctttactttcttttttcttagcactgccgagaaggcaacaggct
tcatgcttcagttaacggacagacggaagaactggggtgctagagcagtg
tgcacaatgcccctccctcttacaccaggcactttctaagacaacgcaga
ggtctagggatcctttaatgtcctcctgagaggacacttaggaagtaaag
cagaatctggagacacatggagtggagcggggaaagaaggtgctgaacat
atgagggacagagtcaagaacacactggcacatcggaaaaagaaaacaaa
tcttatgatcagagaatgagctcagcgataaggagagtgatagacttaaa
cggatgggctatttatttggattgtttatttggataaaaacgtttaagta
ctgttctttttatacctttggaagaagtgaaataccagtgatctactgcg
atttagcaaaaacctagtggtccagggcaccaagcttcagcaacctcaga
tctctttacaaggagtctttatagtctcctgaccggtacgattgatcata
ggctacctgtgagctggcccctgaatacagagcattatgggcagtagacc
ctgtaaggaggtggcaacctccctcccccatgacggagatgtgtaaatgg
atggagaaggaagggaatgactattagtctcaatttttattatttttctg
ctcaggactcctatgcctacccaactaatggctggcagctgtatgaaaaa
aaaaaatcctgtcatatattccttaccttggagaaaccttgctttagttc
tttaaataaagccagaatcaatttttatttgggttcaatactgccacctg
gaatacagtgtttagctaaaccatttgttaattttggttccaagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6663187_6664370
seq2: B6Ng01-039L22.b_38_1205 (reverse)

seq1  CTGTTCCAGCCTCTCCCTCCTACTTTGGGACATTAGGCATGAATCTCCAT  50
      ||||| ||| |||||||| ||||||   |||| || ||||||||||||||
seq2  CTGTT-CAG-CTCTCCCT-CTACTT---GACAATA-GCATGAATCTCCAT  43

seq1  GAATGGCGCTGTAAATATTTTGTTTTTGTTTTTCCAAGTCTAACATTTCA  100
      ||||| | |||| |||||||||  |||||||||||||||| ||||||   
seq2  GAATGAC-CTGT-AATATTTTG--TTTGTTTTTCCAAGTC-AACATT--C  86

seq1  AAGGCTTCAAGATTTCCAAACTTCCTAAGCATGGCGATTAAAGAACAACA  150
      |||||| || |||| |||| ||| |||||||| |||||||||||||||||
seq2  AAGGCTCCAGGATTCCCAACCTT-CTAAGCAT-GCGATTAAAGAACAACA  134

seq1  AAGCATTTCATATAACAGACTATATAAAGATGCCATGAACAGTACAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTCATATAACAGACTATATAAAGATGCCATGAACAGTACAGGGG  184

seq1  TGGGAAGACAAGGTGGTAACTCAAGGTTCATAAAAGATGTGAGGAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGACAAGGTGGTAACTCAAGGTTCATAAAAGATGTGAGGAAGAAA  234

seq1  CTGAACAACTGCATATGTTTGCCACTGGAGGAAGGGAAACCATGGAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAACTGCATATGTTTGCCACTGGAGGAAGGGAAACCATGGAGCAA  284

seq1  TCAGAACATCTCCCTACCTGGCCTTACATCCTATCCTGCCATTCATTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACATCTCCCTACCTGGCCTTACATCCTATCCTGCCATTCATTGCA  334

seq1  AGTGATATTTCAGAGTTCTTTTTTCTTTTTTTGTTTTTGTTTTTGTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATTTCAGAGTTCTTTTTTCTTTTTTTGTTTTTGTTTTTGTTTGC  384

seq1  TTGTTTTTGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  434

seq1  GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCGCCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCGCCAGCC  484

seq1  TCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTC  534

seq1  GAGTTCTTTTTTTCTAATTCTATTTCTTGCATACTATTTAGAAAAGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTTTTTTTCTAATTCTATTTCTTGCATACTATTTAGAAAAGTCCA  584

seq1  TACACTTTAAATACTGACACTAATGTTCTTTACTTTTAAATAGATTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTAAATACTGACACTAATGTTCTTTACTTTTAAATAGATTTCAC  634

seq1  AGATGAGTCCAAATCTTTTCAAGCTCTCCTACAAGAACCACAATATACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTCCAAATCTTTTCAAGCTCTCCTACAAGAACCACAATATACTA  684

seq1  AGTCTCACACATTGCTGTCCGCTTCCATACATTTCTTCCTTTACAGTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACACATTGCTGTCCGCTTCCATACATTTCTTCCTTTACAGTAGT  734

seq1  ACCCTGGAGCTGGCATCCTACTCCATTAAGAAATTATCACTCAAGACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGAGCTGGCATCCTACTCCATTAAGAAATTATCACTCAAGACAGA  784

seq1  CCTACCAATTTTCCAAATTTACCACATAGCTCTTCTCTGTTCAAGTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAATTTTCCAAATTTACCACATAGCTCTTCTCTGTTCAAGTGTCT  834

seq1  GAGGAGTTATATACAGTGTCACATATTTTTATCATATACACCACCCCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTATATACAGTGTCACATATTTTTATCATATACACCACCCCATA  884

seq1  ATCTTATTGTTTAACAGTGTAGTAGCAAAATCATATACCTATGACTTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATTGTTTAACAGTGTAGTAGCAAAATCATATACCTATGACTTCAA  934

seq1  GCAGCTGGTTTGGAATTATATTGATGAATTGTGTCCAAGTTTTCATTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGTTTGGAATTATATTGATGAATTGTGTCCAAGTTTTCATTTAG  984

seq1  AAAACGTCAGTTATTCTCTGAGAGATCACAGTATTTTAAGATCAAAAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTCAGTTATTCTCTGAGAGATCACAGTATTTTAAGATCAAAAGAG  1034

seq1  GCATTGCACATAAAAATTCACTGGAAGGTCTTAAAACGTTATATACTATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCACATAAAAATTCACTGGAAGGTCTTAAAACGTTATATACTATA  1084

seq1  CATTATGCTTTTGTTTTTCTTCTAAAATATACTCTAAATGTCTTGAGGAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGCTTTTGTTTTTCTTCTAAAATATACTCTAAATGTCTTGAGGAC  1134

seq1  AGGAATCAAGTCTAATAAATAGTTCTTTGAATTC  1184
      ||||||||||||||||||||||||||||||||||
seq2  AGGAATCAAGTCTAATAAATAGTTCTTTGAATTC  1168


seq1: chr2_6537841_6539048
seq2: B6Ng01-039L22.g_64_1260

seq1  GAATTCCATGTAATAAGAAGAGGACTTATTCCATCTGTCTATAAAACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTAATAAGAAGAGGACTTATTCCATCTGTCTATAAAACAGA  50

seq1  TTCTGAGTCCTTAAGAGGGAAAGCAACTTTCCTAGGGTCATTTAGGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTCCTTAAGAGGGAAAGCAACTTTCCTAGGGTCATTTAGGAAGT  100

seq1  ATGTGATCTAATATGGACACATCCTACGTTCCTACCCCCACCCAGGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCTAATATGGACACATCCTACGTTCCTACCCCCACCCAGGGTTC  150

seq1  TTGTTCCTTCACTGATTCTCCCAAGCTGGAGGAGGTAGATGAGCCTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTTCACTGATTCTCCCAAGCTGGAGGAGGTAGATGAGCCTTACA  200

seq1  GGCAGAAGGAATGATTATGACTAAAGGAGTCTTGCTCTCTGTTTAGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGGAATGATTATGACTAAAGGAGTCTTGCTCTCTGTTTAGTATT  250

seq1  GTCATTGATTTGTAATGTAGTCCTGCTAATCATCTCACCTTTGTCAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGATTTGTAATGTAGTCCTGCTAATCATCTCACCTTTGTCAGCTA  300

seq1  AGCTTCCTTTACTTTCTTTTTTCTTAGCACTGCCGAGAAGGCAACAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTTTACTTTCTTTTTTCTTAGCACTGCCGAGAAGGCAACAGGCT  350

seq1  TCATGCTTCAGTTAACGGACAGACGGAAGAACTGGGGTGCTAGAGCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTCAGTTAACGGACAGACGGAAGAACTGGGGTGCTAGAGCAGTG  400

seq1  TGCACAATGCCCCTCCCTCTTACACCAGGCACTTTCTAAGACAACGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAATGCCCCTCCCTCTTACACCAGGCACTTTCTAAGACAACGCAGA  450

seq1  GGTCTAGGGATCCTTTAATGTCCTCCTGAGAGGACACTTAGGAAGTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAGGGATCCTTTAATGTCCTCCTGAGAGGACACTTAGGAAGTAAAG  500

seq1  CAGAATCTGGAGACACATGGAGTGGAGCGGGGAAAGAAGGTGCTGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTGGAGACACATGGAGTGGAGCGGGGAAAGAAGGTGCTGAACAT  550

seq1  ATGAGGGACAGAGTCAAGAACACACTGGCACATCGGAAAAAGAAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGACAGAGTCAAGAACACACTGGCACATCGGAAAAAGAAAACAAA  600

seq1  TCTTATGATCAGAGAATGAGCTCAGCGATAAGGAGAGTGATAGACTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGATCAGAGAATGAGCTCAGCGATAAGGAGAGTGATAGACTTAAA  650

seq1  CGGATGGGCTATTTATTTGGATTGTTTATTTGGATAAAAACGTTTAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGGGCTATTTATTTGGATTGTTTATTTGGATAAAAACGTTTAAGTA  700

seq1  CTGTTCTTTTTATACCTTTGGAAGAAGTGAAATACCAGTGATCTACTGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTTTTATACCTTTGGAAGAAGTGAAATACCAGTGATCTACTGCG  750

seq1  ATTTAGCAAAAACCTAGTGGTCCAGGGCACCAAGCTTCAGCAACCTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCAAAAACCTAGTGGTCCAGGGCACCAAGCTTCAGCAACCTCAGA  800

seq1  TCTCTTTACAAGGAGTCTTTATAGTCTCCTGACCGGTACGATTGATCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTACAAGGAGTCTTTATAGTCTCCTGACCGGTACGATTGATCATA  850

seq1  GGCTACCTGTGAGCTGGCCCCTGAATACAGAGCATTATGGGCAGTAGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCTGTGAGCTGGCCCCTGAATACAGAGCATTATGGGCAGTAGACC  900

seq1  CTGTAAGGAGGTGGCAACCTCCCTCCCCCATGACGGAGATGTGTAAATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGGAGGTGGCAACCTCCCTCCCCCATGACGGAGATGTGTAAATGG  950

seq1  ATGGAGAAGGAAGGGAATGACTATTAGTCTCCAATTTTTATTA-TTTTCT  999
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  ATGGAGAAGGAAGGGAATGACTATTAGTCT-CAATTTTTATTATTTTTCT  999

seq1  GCTCAGGACTCCTATGCCTACCCAACT-ATGGCTGGCAGCTGTATGAAAA  1048
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  GCTCAGGACTCCTATGCCTACCCAACTAATGGCTGGCAGCTGTATG-AAA  1048

seq1  AAAAAAAATCCTGTC--ATATTTCTTACCTTGAAGAAA-CTTGCTTTAGT  1095
      |||||||||||||||  ||||| ||||||||| ||||| |||||||||||
seq2  AAAAAAAATCCTGTCATATATTCCTTACCTTGGAGAAACCTTGCTTTAGT  1098

seq1  TCTTTAAAATAAAAGCAGAATCAAAATTTTTTATTTGGTTTCTAATTTCA  1145
      ||||| |||||||  |||||||||   ||||||||||| ||| |||   |
seq2  TCTTT-AAATAAAGCCAGAATCAA---TTTTTATTTGGGTTC-AAT---A  1140

seq1  CTGCCAAACTTGTAATTACAGTGTTTAGCTAAAACTATTTGTATATTTTG  1195
      |||||  || || || |||||||||||||| |||| |||||| || ||| 
seq2  CTGCC--ACCTGGAA-TACAGTGTTTAGCT-AAACCATTTGT-TAATTTT  1185

seq1  GGTTCCAGAGAAG  1208
      ||||||| |||||
seq2  GGTTCCA-AGAAG  1197


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